Prupe.5G006600_v2.0.a1

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011307
Physical Location & Seq
Forward (+)
729848 .. 733588
3741 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G006600.1

Sequence Viewer

Length: 1602 bp
ATGGGCACAGCACATAGTTTGACGGAGGAAGGGAGAAATGGGGGCAGGGAACTTACTTGGGACGATAAGGAGGTTTGTGGGCATTATCTGGTTCGCTTTTGTCCTTTCGATCTCTTCGTCAATACTCGAAGCGATATAGGACCCTGCCCTAAAATACATGACCCGAAGTTGAAAGAAAGTTTTGAGAAGTCCCCACAGCATGATGCATATGTGGCCAAGTTTGAAGCTGAACTTGCTCAGTTTTGTGAGATATTGGTGATGGATTTGGATAGAAGAGTAAGGCGTGAGAGAGAACGCCGTCATCAGGAGGTGGAACCTGCACCGCCACATCCACCGTCAACTGAACAGTTTGAACAGTTGTCTGTTGTGGAGGAAAAATTAAAGAACTTGCTTGAACAAGTGGAGGCCCTTGGTGAAGCTGGGAAGATGGATGAAGCTGAAGCGCCCATGAGAAAGATGCCTAATAATAATGCTGTGGAGAATCCTGAAGCTGGTCGGGGCCGTCAGGTCCAGGGTGGTTCTAGTTCCCCCACTCTCTTCGGTAATAGCCAATCAAACTGGTATAGTGTTTTACTCCAGCAAATCTCAGTCTATGGGGTAGCCGCTGGCTACTGCTTATCTGCCTCGTTGCTTTCCATCATCAACAAATGGGCTGTCGTGAAATTTCCTTATCCTGGGGCACTAACTGCTTTACAGTATTTTACAAGTGTTATTGGGGTCCTCGTTTGTGGCCAGCTTAAGTTGATAGAGTACGATTCGCTTTACCTACTTACCATGTGGCGCTTCCTACCAGCAGCAATTATATTCTACCTCTCTCTCTTCACTAACAGTGAGCTCCTTCTCCATGCTAATGTTGACACTTTCATTGTCTTTCGTTCTGTTGTTCCAATTTTTGTTGCCATAGGAGAGACTCTTTTCTTGCACCAACCATGGCCATCAATGAGGACATGGACCTCACTTGCCACTATTTTGGGGGGAAGTGTGATTTTTGTACTAACAGATTACCAGTTCACAGTAACGGCTTATAGTTGGGCTCTAGCTTACTTGGTAAGCATGTCCATAGACTTTGTCTACATAAAGCATGTGGTAATGACCATTGGTTTAAATACATGGGGTCTTGTACTGTATAACAATCTTGAGGCTCTTCTACTGTTTCCGTTGGAACTACTTGTAATGGGTGAATTGAAGAAGATTAAGCATGAAATCTCAGATGAATCAGATTGGTATTCTCTTGAGGTGCTTTTGCCAGTGGGGTTATCATGTTTATTTGGTTTATCCATCTCTTTCTTTGGGTTTTCTTGCCGAAGGGCTATTTCTGCAACTGGATTTACTGTTCTTGGTATAGTGAACAAATTATTAACAGTTGTGATTAATCTGGTTATTTGGGACAAACATTCAACCTTTGTTGGTACAGTGGGCCTGTTGATATGCATGGCAGGTGGTGTTATGTATCAGCAATCTACAAGCAAGAAGCCTAAGGATGTGAATCAAGTAAAAGCACAAGAGACTGAGGAAGAAAAACAAAAGTTAATTGAAACGAAAAGCAGCTTAGAAAGCAAGAACAATGAGAAATGGACTGTTGAATCTGAAGGGGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0008150 GO:0015780 GO:0015931 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:1901264
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

534

Amino Acids

59.83

Weight (kDa)

5.6

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1427
Acc36I ACCTGC 2 cut(s) 325, 1427
AccI GTMKAC 1 cut(s) 1071
AciI CCGC 2 cut(s) 323, 603
AcoI YGGCCR 3 cut(s) 213, 730, 932
AcsI RAATTY 1 cut(s) 662
AcuI CTGAAG 2 cut(s) 459, 507
AfaI GTAC 4 cut(s) 752, 993, 1122, 1411
AfiI CCNNNNNNNGG 3 cut(s) 304, 491, 674
AflII CTTAAG 1 cut(s) 737
AgsI TTSAA 8 cut(s) 172, 224, 353, 395, 1186, 1398, 1535, 1583
AjnI CCWGG 2 cut(s) 510, 673
AloI GAACNNNNNNTCC 2 cut(s) 1317, 1349
AluBI AGCT 8 cut(s) 227, 419, 437, 491, 736, 835, 1040, 1548
AluI AGCT 8 cut(s) 227, 419, 437, 491, 736, 835, 1040, 1548
Alw21I GWGCWC 1 cut(s) 837
Alw26I GTCTC 2 cut(s) 902, 1499
AoxI GGCC 6 cut(s) 213, 405, 499, 730, 932, 1417
ApeKI GCWGC 2 cut(s) 794, 1545
ApoI RAATTY 1 cut(s) 662
ArsI GACNNNNNNTTYG 2 cut(s) 639, 671
AseI ATTAAT 1 cut(s) 1371
AspLEI GCGC 2 cut(s) 445, 783
AspS9I GGNCC 7 cut(s) 140, 406, 499, 508, 718, 951, 1417
AsuHPI GGTGA 3 cut(s) 268, 425, 1190
AvaII GGWCC 4 cut(s) 140, 508, 718, 951
AxyI CCTNAGG 1 cut(s) 1476
BaeGI GKGCMC 2 cut(s) 8, 682
BalI TGGCCA 3 cut(s) 215, 732, 934
BanII GRGCYC 2 cut(s) 837, 1036
Bbv12I GWGCWC 1 cut(s) 837
BbvI GCAGC 2 cut(s) 806, 1557
BccI CCATC 5 cut(s) 253, 421, 644, 943, 1286
BceAI ACGGC 3 cut(s) 282, 486, 1035
BciT130I CCWGG 2 cut(s) 512, 675
BcoDI GTCTC 2 cut(s) 902, 1499
BfaI CTAG 2 cut(s) 522, 1037
BfoI RGCGCY 2 cut(s) 446, 784
BfrI CTTAAG 1 cut(s) 737
BfuAI ACCTGC 2 cut(s) 325, 1427
BisI GCNGC 3 cut(s) 603, 795, 1546
BlsI GCNGC 3 cut(s) 604, 796, 1547
Bme1390I CCNGG 2 cut(s) 512, 675
Bme18I GGWCC 4 cut(s) 140, 508, 718, 951
BmgT120I GGNCC 7 cut(s) 140, 406, 499, 508, 718, 951, 1417
BmiI GGNNCC 4 cut(s) 142, 315, 500, 719
BmrFI CCNGG 2 cut(s) 512, 675
BmsI GCATC 2 cut(s) 193, 447
BpmI CTGGAG 1 cut(s) 560
BpuEI CTTGAG 2 cut(s) 1157, 1253
BsaBI GATNNNNATC 1 cut(s) 1485
BsaJI CCNNGG 4 cut(s) 409, 511, 674, 929
Bsc4I CCNNNNNNNGG 3 cut(s) 304, 491, 674
Bse1I ACTGG 4 cut(s) 563, 1006, 1247, 1327
Bse21I CCTNAGG 1 cut(s) 1476
Bse8I GATNNNNATC 1 cut(s) 1485
BseBI CCWGG 2 cut(s) 512, 675
BseDI CCNNGG 4 cut(s) 409, 511, 674, 929
BseGI GGATG 3 cut(s) 328, 436, 1486
BseJI GATNNNNATC 1 cut(s) 1485
BseLI CCNNNNNNNGG 3 cut(s) 304, 491, 674
BseMII CTCAG 4 cut(s) 251, 600, 1221, 1500
BseNI ACTGG 4 cut(s) 563, 1006, 1247, 1327
BseSI GKGCMC 2 cut(s) 8, 682
BseXI GCAGC 2 cut(s) 806, 1557
BseYI CCCAGC 1 cut(s) 419
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 6 cut(s) 215, 407, 501, 732, 934, 1419
BsiHKAI GWGCWC 1 cut(s) 837
BslFI GGGAC 3 cut(s) 74, 175, 1400
BslI CCNNNNNNNGG 3 cut(s) 304, 491, 674
BsmAI GTCTC 2 cut(s) 902, 1499
BsmFI GGGAC 3 cut(s) 74, 175, 1400
BsnI GGCC 6 cut(s) 215, 407, 501, 732, 934, 1419
Bsp1286I GDGCHC 4 cut(s) 8, 682, 837, 1036
Bsp143I GATC 1 cut(s) 109
Bsp19I CCATGG 1 cut(s) 929
BspACI CCGC 2 cut(s) 323, 603
BspANI GGCC 6 cut(s) 215, 407, 501, 732, 934, 1419
BspCNI CTCAG 4 cut(s) 250, 599, 1220, 1501
BspLI GGNNCC 4 cut(s) 142, 315, 500, 719
BspMI ACCTGC 2 cut(s) 325, 1427
BspQI GCTCTTC 1 cut(s) 1149
BspTI CTTAAG 1 cut(s) 737
BsrI ACTGG 4 cut(s) 563, 1006, 1247, 1327
BssECI CCNNGG 4 cut(s) 409, 511, 674, 929
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 2 cut(s) 409, 929
Bst2UI CCWGG 2 cut(s) 512, 675
Bst6I CTCTTC 5 cut(s) 119, 268, 542, 824, 1149
BstAFI CTTAAG 1 cut(s) 737
BstAPI GCANNNNNTGC 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 607, 734
BstDEI CTNAG 6 cut(s) 237, 586, 1207, 1476, 1509, 1549
BstDSI CCRYGG 1 cut(s) 929
BstF5I GGATG 3 cut(s) 328, 436, 1486
BstH2I RGCGCY 2 cut(s) 446, 784
BstHHI GCGC 2 cut(s) 445, 783
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 2 cut(s) 902, 1499
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 5 cut(s) 212, 233, 686, 1316, 1554
BstNI CCWGG 2 cut(s) 512, 675
BstNSI RCATGY 2 cut(s) 1057, 1085
BstSCI CCNGG 2 cut(s) 510, 673
BstSLI GKGCMC 2 cut(s) 8, 682
BstV1I GCAGC 2 cut(s) 806, 1557
BstXI CCANNNNNNTGG 1 cut(s) 970
Bsu36I CCTNAGG 1 cut(s) 1476
BsuRI GGCC 6 cut(s) 215, 407, 501, 732, 934, 1419
BtgI CCRYGG 1 cut(s) 929
BtsCI GGATG 3 cut(s) 328, 436, 1486
BtsIMutI CAGTG 3 cut(s) 835, 1254, 1419
BveI ACCTGC 2 cut(s) 325, 1427
Cac8I GCNNGC 2 cut(s) 607, 734
CfoI GCGC 2 cut(s) 445, 783
Cfr13I GGNCC 7 cut(s) 140, 406, 499, 508, 718, 951, 1417
Csp6I GTAC 4 cut(s) 751, 992, 1121, 1410
CviQI GTAC 4 cut(s) 751, 992, 1121, 1410
DdeI CTNAG 6 cut(s) 237, 586, 1207, 1476, 1509, 1549
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DraI TTTAAA 1 cut(s) 1104
EaeI YGGCCR 3 cut(s) 213, 730, 932
Eam1104I CTCTTC 5 cut(s) 119, 268, 542, 824, 1149
EarI CTCTTC 5 cut(s) 119, 268, 542, 824, 1149
Ecl136II GAGCTC 1 cut(s) 835
Eco130I CCWWGG 2 cut(s) 409, 929
Eco24I GRGCYC 2 cut(s) 837, 1036
Eco47I GGWCC 4 cut(s) 140, 508, 718, 951
Eco53kI GAGCTC 1 cut(s) 835
Eco57I CTGAAG 2 cut(s) 459, 507
Eco81I CCTNAGG 1 cut(s) 1476
EcoICRI GAGCTC 1 cut(s) 835
EcoO109I RGGNCCY 3 cut(s) 140, 406, 718
EcoRII CCWGG 2 cut(s) 510, 673
EcoT14I CCWWGG 2 cut(s) 409, 929
EcoT22I ATGCAT 2 cut(s) 208, 1433
EcoT38I GRGCYC 2 cut(s) 837, 1036
ErhI CCWWGG 2 cut(s) 409, 929
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 3 cut(s) 74, 175, 1400
FauNDI CATATG 1 cut(s) 208
FblI GTMKAC 1 cut(s) 1071
Fnu4HI GCNGC 3 cut(s) 603, 795, 1546
FokI GGATG 3 cut(s) 315, 443, 1493
FriOI GRGCYC 2 cut(s) 837, 1036
Fsp4HI GCNGC 3 cut(s) 603, 795, 1546
FspBI CTAG 2 cut(s) 522, 1037
GlaI GCGC 2 cut(s) 444, 782
GluI GCNGC 3 cut(s) 603, 795, 1546
GsaI CCCAGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 560
HaeII RGCGCY 2 cut(s) 446, 784
HaeIII GGCC 6 cut(s) 215, 407, 501, 732, 934, 1419
HhaI GCGC 2 cut(s) 445, 783
Hin6I GCGC 2 cut(s) 443, 781
HinP1I GCGC 2 cut(s) 443, 781
HincII GTYRAC 2 cut(s) 339, 856
HindII GTYRAC 2 cut(s) 339, 856
HinfI GANTC 6 cut(s) 481, 755, 910, 1214, 1486, 1583
HphI GGTGA 3 cut(s) 268, 425, 1190
Hpy166II GTNNAC 5 cut(s) 339, 856, 1011, 1072, 1348
Hpy188I TCNGA 3 cut(s) 1210, 1219, 1588
Hpy188III TCNNGA 5 cut(s) 305, 485, 658, 1136, 1232
Hpy8I GTNNAC 5 cut(s) 339, 856, 1011, 1072, 1348
HpyAV CCTTC 4 cut(s) 23, 848, 1299, 1583
HpyCH4V TGCA 5 cut(s) 206, 320, 922, 1319, 1431
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 233, 686, 1316, 1554
HpyF3I CTNAG 6 cut(s) 237, 586, 1207, 1476, 1509, 1549
HspAI GCGC 2 cut(s) 443, 781
Kzo9I GATC 1 cut(s) 109
LguI GCTCTTC 1 cut(s) 1149
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 2 cut(s) 806, 1557
LweI GCATC 2 cut(s) 193, 447
MaeI CTAG 2 cut(s) 522, 1037
MaeIII GTNAC 1 cut(s) 1015
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 9 cut(s) 106, 285, 436, 529, 811, 1136, 1198, 1201, 1526
MhlI GDGCHC 4 cut(s) 8, 682, 837, 1036
MlsI TGGCCA 3 cut(s) 215, 732, 934
MluCI AATT 7 cut(s) 377, 662, 798, 888, 1181, 1352, 1530
MluNI TGGCCA 3 cut(s) 215, 732, 934
MlyI GAGTC 1 cut(s) 904
MmeI TCCRAC 1 cut(s) 1140
Mox20I TGGCCA 3 cut(s) 215, 732, 934
Mph1103I ATGCAT 2 cut(s) 208, 1433
MscI TGGCCA 3 cut(s) 215, 732, 934
MseI TTAA 7 cut(s) 380, 738, 1103, 1194, 1358, 1371, 1529
MslI CAYNNNNRTG 1 cut(s) 849
Msp20I TGGCCA 3 cut(s) 215, 732, 934
MspA1I CMGCKG 1 cut(s) 605
MspCI CTTAAG 1 cut(s) 737
MspR9I CCNGG 2 cut(s) 512, 675
MvaI CCWGG 2 cut(s) 512, 675
MwoI GCNNNNNNNGC 5 cut(s) 212, 233, 686, 1316, 1554
NcoI CCATGG 1 cut(s) 929
NdeI CATATG 1 cut(s) 208
NdeII GATC 1 cut(s) 109
NlaIV GGNNCC 4 cut(s) 142, 315, 500, 719
NsiI ATGCAT 2 cut(s) 208, 1433
NspI RCATGY 2 cut(s) 1057, 1085
PaqCI CACCTGC 1 cut(s) 1427
PciSI GCTCTTC 1 cut(s) 1149
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 5 cut(s) 481, 755, 1214, 1486, 1583
PflFI GACNNNGTC 1 cut(s) 1067
PkrI GCNGC 3 cut(s) 604, 796, 1547
PleI GAGTC 1 cut(s) 904
PpsI GAGTC 1 cut(s) 904
PpuMI RGGWCCY 2 cut(s) 140, 718
PshBI ATTAAT 1 cut(s) 1371
Psp124BI GAGCTC 1 cut(s) 837
Psp5II RGGWCCY 2 cut(s) 140, 718
Psp6I CCWGG 2 cut(s) 510, 673
PspFI CCCAGC 1 cut(s) 419
PspGI CCWGG 2 cut(s) 510, 673
PspN4I GGNNCC 4 cut(s) 142, 315, 500, 719
PspPI GGNCC 7 cut(s) 140, 406, 499, 508, 718, 951, 1417
PspPPI RGGWCCY 2 cut(s) 140, 718
PsyI GACNNNGTC 1 cut(s) 1067
RsaI GTAC 4 cut(s) 752, 993, 1122, 1411
RsaNI GTAC 4 cut(s) 751, 992, 1121, 1410
RseI CAYNNNNRTG 1 cut(s) 849
SacI GAGCTC 1 cut(s) 837
SapI GCTCTTC 1 cut(s) 1149
SaqAI TTAA 7 cut(s) 380, 738, 1103, 1194, 1358, 1371, 1529
SatI GCNGC 3 cut(s) 603, 795, 1546
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 7 cut(s) 140, 406, 499, 508, 718, 951, 1417
SchI GAGTC 1 cut(s) 904
ScrFI CCNGG 2 cut(s) 512, 675
SduI GDGCHC 4 cut(s) 8, 682, 837, 1036
SfaNI GCATC 2 cut(s) 193, 447
SinI GGWCC 4 cut(s) 140, 508, 718, 951
SmiMI CAYNNNNRTG 1 cut(s) 849
SmlI CTYRAG 3 cut(s) 737, 1136, 1232
SmoI CTYRAG 3 cut(s) 737, 1136, 1232
Sse9I AATT 7 cut(s) 377, 662, 798, 888, 1181, 1352, 1530
SsiI CCGC 2 cut(s) 323, 603
SspMI CTAG 2 cut(s) 522, 1037
SstI GAGCTC 1 cut(s) 837
StyD4I CCNGG 2 cut(s) 510, 673
StyI CCWWGG 2 cut(s) 409, 929
TaqI TCGA 2 cut(s) 108, 127
TasI AATT 7 cut(s) 377, 662, 798, 888, 1181, 1352, 1530
TatI WGTACW 2 cut(s) 991, 1120
TauI GCSGC 1 cut(s) 605
TfiI GAWTC 5 cut(s) 481, 755, 1214, 1486, 1583
Tru1I TTAA 7 cut(s) 380, 738, 1103, 1194, 1358, 1371, 1529
Tru9I TTAA 7 cut(s) 380, 738, 1103, 1194, 1358, 1371, 1529
TscAI CASTG 3 cut(s) 835, 1254, 1419
TseI GCWGC 2 cut(s) 794, 1545
TspDTI ATGAA 4 cut(s) 447, 853, 1215, 1227
TspGWI ACGGA 2 cut(s) 38, 1146
TspRI CASTG 3 cut(s) 835, 1254, 1419
Tth111I GACNNNGTC 1 cut(s) 1067
Vha464I CTTAAG 1 cut(s) 737
VpaK11BI GGWCC 4 cut(s) 140, 508, 718, 951
VspI ATTAAT 1 cut(s) 1371
XapI RAATTY 1 cut(s) 662
XceI RCATGY 2 cut(s) 1057, 1085
XmiI GTMKAC 1 cut(s) 1071
XspI CTAG 2 cut(s) 522, 1037
Zsp2I ATGCAT 2 cut(s) 208, 1433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.