RchiOBHm_Chr7g0216461

GDP-mannose transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011307
Physical Location & Seq
Reverse (-)
34012268 .. 34015667
3400 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19368

Sequence Viewer

Length: 1566 bp
ATGGCAACAGAGGAAGATGGAAAGGGGCACAGGAAAATTGAATGGGATGATAAGGAGGCTTGTGGGCACTACATGGTTCGTTTTTGTCCTCATGATCTTTTCGCCGGTACCCGAAGCGATCTAGGACCATGCTATAGGATACATGACCCGAAGCTGAAAGAAAGTTTTGAGAAGTCCCCAAGACATGACGAATACGTGCCCAAGTTTGAAGCTGAACTTGCACAGTTTTGTGAGATATTGGTGATGGATTTAGATAGAAGAGTAAGGCGTGAACGAGAACGACGTTCTCTGGAGGGGGAACCTACATCACCAACTCCCTTGCCAACTAACAAGTCAGAACAGTTATTTGTCCTGGAGGAAAAGTTAAAGAACTTGCTTAAGCAAGTGGATGCCCTTGGTGAAATTGGGAAGGTGGATGAAGCTGAAGCACTCAAGAGAAAGAATCCTGAAGTCAGTGAAGACCAGGATGGTTCTACTCCCCCTGCTGTTACCATCCAATCAAACTGGTACAGTATTTTACGCCAGCACATCTCAGTCTATGGAATAGCTGCTGGTTACTGCTTATCTGCGTCATTGCTTTCCATCATCAACAAATGGGCTGTGGTAAAATTTCCTTATCCTGGGGCACTGACTGCTTTACAGTATTTTACAAGTGCTGTTGGGGTCCTCCTCTGTGGCTGGTTTAAGTTCATAGAGTATGACTCGCTTGACCTCCTTACTATGTGGCGGTTCCTACCAGCCGCAATTATATTCTACCTCTCTCTCTTCACCAACAGCGAGCTCCTTCTGCATGCTAATGTTGACACTTTCATTGTGTTTCGATCAGTCGTTCCCATCTTTGTTGCAATTGGAGAGACTCTCTTCTTGCACCAGCCATGGCCATCAATGAGGACATGGATCTCACTCGGGACTATTTTTGGAGGAAGTGTGATTTATGTGCTAACAGATTACCAGTTCACTGTCACGGCTTATAGTTGGGCTCTAGCTTACTTGATAAGCATGTCCATTGATTTTGTATACATAAAGCATGTGGTAATGACCATTGGTTTAAATACATGGGGTCTTGTATTGTACAACAATCTTGAAGCTCTTCTACTGTTCCCATTGGAACTACTTGTAATGGGTGAATTGAAGAAGATTAAGCATGAAATCACAGATGAATCAGATTGGTACTCGTTTGGGGTGATTTTGCCAGTGGTGTTATCGTGTTTATTTGGTTTATCCATCTCTTTCTTTGGGTTTTCTTGCCGGAGGGCTATTTCTGCAACTGGATTTACTGTTCTGGGTATTGTGAATAAGCTATTAACAGTTGTGATTAATCTGGTTATTTGGGAGAAGCATTCGACACTTGTTGGTACTGTGGGGTTATTGATATGTATGGCAGGTGGTGTTATGTATCAGCAATCTACAAGCAACAAGCCCAAAGTTGTGAATGAAGTAAAGGCACAACAGACTGACGAAGAACGACAAAAGTTAATTGAAATGAACAGCAGCTCAGAAAGAAACAACAAAGACACATGGGCTACGGGAAATGAACAAGGAAATGAGAAGTCTCCTTCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0008150 GO:0015780 GO:0015931 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:1901264
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

521

Amino Acids

58.97

Weight (kDa)

5.76

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LUC7 PF03194 7 - 155 6.7e-40 LUC7 N_terminus
TPT PF03151 190 - 466 4.6e-16 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1373
Acc36I ACCTGC 1 cut(s) 1373
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 1017
AciI CCGC 2 cut(s) 727, 741
AclWI GGATC 1 cut(s) 905
AcoI YGGCCR 1 cut(s) 878
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 2 cut(s) 444, 468
AfaI GTAC 5 cut(s) 109, 509, 1073, 1172, 1357
AfiI CCNNNNNNNGG 1 cut(s) 620
AflII CTTAAG 1 cut(s) 377
AgsI TTSAA 6 cut(s) 41, 209, 1085, 1132, 1481, 1560
AjnI CCWGG 3 cut(s) 351, 462, 619
AloI GAACNNNNNNTCC 2 cut(s) 1263, 1295
AluBI AGCT 9 cut(s) 154, 212, 422, 548, 781, 986, 1088, 1300, 1494
AluI AGCT 9 cut(s) 154, 212, 422, 548, 781, 986, 1088, 1300, 1494
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 2 cut(s) 848, 1557
AlwI GGATC 1 cut(s) 905
Ama87I CYCGRG 1 cut(s) 905
AoxI GGCC 1 cut(s) 878
ApeKI GCWGC 2 cut(s) 548, 1491
ApoI RAATTY 1 cut(s) 608
AseI ATTAAT 1 cut(s) 1317
Asp700I GAANNNNTTC 1 cut(s) 1089
Asp718I GGTACC 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 125, 664
AsuHPI GGTGA 6 cut(s) 253, 300, 410, 760, 1136, 1195
AvaI CYCGRG 1 cut(s) 905
AvaII GGWCC 2 cut(s) 125, 664
BaeGI GKGCMC 4 cut(s) 30, 69, 201, 628
BalI TGGCCA 1 cut(s) 880
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 2 cut(s) 783, 982
BarI GAAGNNNNNNTAC 2 cut(s) 1077, 1109
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 2 cut(s) 535, 1503
BccI CCATC 8 cut(s) 11, 238, 461, 500, 590, 842, 889, 1232
BceAI ACGGC 1 cut(s) 981
BciT130I CCWGG 3 cut(s) 353, 464, 621
BciVI GTATCC 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 848, 1557
BfaI CTAG 2 cut(s) 122, 983
BfmI CTRYAG 1 cut(s) 133
BfrI CTTAAG 1 cut(s) 377
BfuAI ACCTGC 1 cut(s) 1373
BfuI GTATCC 1 cut(s) 132
BisI GCNGC 3 cut(s) 549, 741, 1492
BlsI GCNGC 3 cut(s) 550, 742, 1493
Bme1390I CCNGG 3 cut(s) 353, 464, 621
Bme18I GGWCC 2 cut(s) 125, 664
BmeT110I CYCGRG 1 cut(s) 905
BmgT120I GGNCC 2 cut(s) 125, 664
BmiI GGNNCC 4 cut(s) 109, 300, 665, 731
BmrFI CCNGG 3 cut(s) 353, 464, 621
BmsI GCATC 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 465
BplI GAGNNNNNCTC 4 cut(s) 686, 718, 843, 875
BpmI CTGGAG 2 cut(s) 311, 374
BpuEI CTTGAG 1 cut(s) 416
BsaAI YACGTR 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 394, 620, 875
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 912, 942
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 4 cut(s) 509, 952, 1193, 1273
Bse3DI GCAATG 1 cut(s) 572
BseBI CCWGG 3 cut(s) 353, 464, 621
BseDI CCNNGG 3 cut(s) 394, 620, 875
BseGI GGATG 5 cut(s) 52, 394, 421, 472, 492
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 1 cut(s) 572
BseMII CTCAG 2 cut(s) 546, 1509
BseNI ACTGG 4 cut(s) 509, 952, 1193, 1273
BseRI GAGGAG 1 cut(s) 659
BseSI GKGCMC 4 cut(s) 30, 69, 201, 628
BseXI GCAGC 2 cut(s) 535, 1503
BshFI GGCC 1 cut(s) 880
BshNI GGYRCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 783
BsiHKCI CYCGRG 1 cut(s) 905
BsiSI CCGG 2 cut(s) 105, 1249
BslFI GGGAC 2 cut(s) 160, 922
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 2 cut(s) 848, 1557
BsmFI GGGAC 2 cut(s) 160, 922
BsmI GAATGC 1 cut(s) 1339
BsnI GGCC 1 cut(s) 880
BsoBI CYCGRG 1 cut(s) 905
Bsp1286I GDGCHC 6 cut(s) 30, 69, 201, 628, 783, 982
Bsp1407I TGTACA 1 cut(s) 1071
Bsp143I GATC 4 cut(s) 94, 118, 821, 897
Bsp19I CCATGG 1 cut(s) 875
BspACI CCGC 2 cut(s) 727, 741
BspANI GGCC 1 cut(s) 880
BspCNI CTCAG 2 cut(s) 545, 1508
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 4 cut(s) 109, 300, 665, 731
BspMI ACCTGC 1 cut(s) 1373
BspPI GGATC 1 cut(s) 905
BspQI GCTCTTC 1 cut(s) 1095
BspT107I GGYRCC 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 377
BsrDI GCAATG 1 cut(s) 572
BsrFI RCCGGY 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 1071
BsrI ACTGG 4 cut(s) 509, 952, 1193, 1273
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 3 cut(s) 394, 620, 875
BssMI GATC 4 cut(s) 94, 118, 821, 897
BssNAI GTATAC 1 cut(s) 1018
BssT1I CCWWGG 2 cut(s) 394, 875
Bst1107I GTATAC 1 cut(s) 1018
Bst2UI CCWGG 3 cut(s) 353, 464, 621
Bst4CI ACNGT 9 cut(s) 225, 342, 512, 642, 961, 1098, 1279, 1309, 1360
Bst6I CTCTTC 4 cut(s) 253, 770, 866, 1095
BstAFI CTTAAG 1 cut(s) 377
BstAPI GCANNNNNTGC 1 cut(s) 632
BstAUI TGTACA 1 cut(s) 1071
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 3 cut(s) 524, 779, 792
BstDEI CTNAG 2 cut(s) 532, 1495
BstDSI CCRYGG 1 cut(s) 875
BstF5I GGATG 5 cut(s) 52, 394, 421, 472, 492
BstKTI GATC 4 cut(s) 97, 121, 824, 900
BstMAI GTCTC 2 cut(s) 848, 1557
BstMBI GATC 4 cut(s) 94, 118, 821, 897
BstMWI GCNNNNNNNGC 4 cut(s) 218, 632, 787, 1262
BstNI CCWGG 3 cut(s) 353, 464, 621
BstNSI RCATGY 3 cut(s) 794, 1003, 1031
BstSCI CCNGG 3 cut(s) 351, 462, 619
BstSFI CTRYAG 1 cut(s) 133
BstSLI GKGCMC 4 cut(s) 30, 69, 201, 628
BstV1I GCAGC 2 cut(s) 535, 1503
BstV2I GAAGAC 1 cut(s) 465
BstX2I RGATCY 1 cut(s) 897
BstYI RGATCY 1 cut(s) 897
BstZ17I GTATAC 1 cut(s) 1018
BsuI GTATCC 1 cut(s) 132
BsuRI GGCC 1 cut(s) 880
BtgI CCRYGG 1 cut(s) 875
BtsCI GGATG 5 cut(s) 52, 394, 421, 472, 492
BtsIMutI CAGTG 4 cut(s) 460, 626, 957, 1200
BveI ACCTGC 1 cut(s) 1373
Cac8I GCNNGC 3 cut(s) 524, 779, 792
CciI TCATGA 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 125, 664
CseI GACGC 1 cut(s) 558
Csp6I GTAC 5 cut(s) 108, 508, 1072, 1171, 1356
CviQI GTAC 5 cut(s) 108, 508, 1072, 1171, 1356
DdeI CTNAG 2 cut(s) 532, 1495
DpnI GATC 4 cut(s) 96, 120, 823, 899
DpnII GATC 4 cut(s) 94, 118, 821, 897
DraI TTTAAA 1 cut(s) 1050
EaeI YGGCCR 1 cut(s) 878
Eam1104I CTCTTC 4 cut(s) 253, 770, 866, 1095
EarI CTCTTC 4 cut(s) 253, 770, 866, 1095
Ecl136II GAGCTC 1 cut(s) 781
Eco130I CCWWGG 2 cut(s) 394, 875
Eco24I GRGCYC 2 cut(s) 783, 982
Eco47I GGWCC 2 cut(s) 125, 664
Eco53kI GAGCTC 1 cut(s) 781
Eco57I CTGAAG 2 cut(s) 444, 468
Eco88I CYCGRG 1 cut(s) 905
EcoICRI GAGCTC 1 cut(s) 781
EcoO109I RGGNCCY 1 cut(s) 664
EcoRII CCWGG 3 cut(s) 351, 462, 619
EcoT14I CCWWGG 2 cut(s) 394, 875
EcoT38I GRGCYC 2 cut(s) 783, 982
ErhI CCWWGG 2 cut(s) 394, 875
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FaqI GGGAC 2 cut(s) 160, 922
FblI GTMKAC 1 cut(s) 1017
Fnu4HI GCNGC 3 cut(s) 549, 741, 1492
FokI GGATG 5 cut(s) 59, 401, 428, 479, 479
FriOI GRGCYC 2 cut(s) 783, 982
Fsp4HI GCNGC 3 cut(s) 549, 741, 1492
FspBI CTAG 2 cut(s) 122, 983
GluI GCNGC 3 cut(s) 549, 741, 1492
GsuI CTGGAG 2 cut(s) 311, 374
HaeIII GGCC 1 cut(s) 880
HapII CCGG 2 cut(s) 105, 1249
HgaI GACGC 1 cut(s) 558
HincII GTYRAC 1 cut(s) 802
HindII GTYRAC 1 cut(s) 802
HinfI GANTC 4 cut(s) 442, 701, 856, 1160
HpaII CCGG 2 cut(s) 105, 1249
HphI GGTGA 6 cut(s) 253, 300, 410, 760, 1136, 1195
Hpy166II GTNNAC 4 cut(s) 272, 802, 957, 1018
Hpy188I TCNGA 3 cut(s) 337, 1165, 1498
Hpy188III TCNNGA 6 cut(s) 92, 290, 433, 446, 907, 1082
Hpy8I GTNNAC 4 cut(s) 272, 802, 957, 1018
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 3 cut(s) 403, 794, 1566
HpyCH4III ACNGT 9 cut(s) 225, 342, 512, 642, 961, 1098, 1279, 1309, 1360
HpyCH4IV ACGT 2 cut(s) 195, 283
HpyCH4V TGCA 5 cut(s) 221, 790, 845, 868, 1265
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 632, 787, 1262
HpyF3I CTNAG 2 cut(s) 532, 1495
HpySE526I ACGT 2 cut(s) 195, 283
KpnI GGTACC 1 cut(s) 111
Kzo9I GATC 4 cut(s) 94, 118, 821, 897
LguI GCTCTTC 1 cut(s) 1095
LmnI GCTCC 1 cut(s) 786
Lsp1109I GCAGC 2 cut(s) 535, 1503
LweI GCATC 1 cut(s) 379
MaeI CTAG 2 cut(s) 122, 983
MaeII ACGT 2 cut(s) 195, 283
MaeIII GTNAC 3 cut(s) 487, 554, 961
MalI GATC 4 cut(s) 96, 120, 823, 899
MboI GATC 4 cut(s) 94, 118, 821, 897
MboII GAAGA 9 cut(s) 26, 270, 470, 757, 853, 1082, 1144, 1147, 1472
MfeI CAATTG 1 cut(s) 846
MflI RGATCY 1 cut(s) 897
MhlI GDGCHC 6 cut(s) 30, 69, 201, 628, 783, 982
MlsI TGGCCA 1 cut(s) 880
MluCI AATT 7 cut(s) 36, 402, 608, 744, 846, 1127, 1476
MluNI TGGCCA 1 cut(s) 880
MlyI GAGTC 2 cut(s) 695, 850
Mox20I TGGCCA 1 cut(s) 880
MroXI GAANNNNTTC 1 cut(s) 1089
MscI TGGCCA 1 cut(s) 880
MseI TTAA 8 cut(s) 365, 378, 684, 1049, 1140, 1304, 1317, 1475
MslI CAYNNNNRTG 1 cut(s) 795
Msp20I TGGCCA 1 cut(s) 880
MspCI CTTAAG 1 cut(s) 377
MspI CCGG 2 cut(s) 105, 1249
MspR9I CCNGG 3 cut(s) 353, 464, 621
MunI CAATTG 1 cut(s) 846
Mva1269I GAATGC 1 cut(s) 1339
MvaI CCWGG 3 cut(s) 353, 464, 621
MwoI GCNNNNNNNGC 4 cut(s) 218, 632, 787, 1262
NcoI CCATGG 1 cut(s) 875
NdeII GATC 4 cut(s) 94, 118, 821, 897
NlaIV GGNNCC 4 cut(s) 109, 300, 665, 731
NmuCI GTSAC 1 cut(s) 961
NspI RCATGY 3 cut(s) 794, 1003, 1031
PaeI GCATGC 1 cut(s) 794
PagI TCATGA 1 cut(s) 91
PaqCI CACCTGC 1 cut(s) 1373
PciSI GCTCTTC 1 cut(s) 1095
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PctI GAATGC 1 cut(s) 1339
PdmI GAANNNNTTC 1 cut(s) 1089
PfeI GAWTC 2 cut(s) 442, 1160
PfoI TCCNGGA 1 cut(s) 351
PkrI GCNGC 3 cut(s) 550, 742, 1493
PleI GAGTC 2 cut(s) 695, 850
PpsI GAGTC 2 cut(s) 695, 850
Ppu21I YACGTR 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 664
PshBI ATTAAT 1 cut(s) 1317
Psp124BI GAGCTC 1 cut(s) 783
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 3 cut(s) 351, 462, 619
PspGI CCWGG 3 cut(s) 351, 462, 619
PspN4I GGNNCC 4 cut(s) 109, 300, 665, 731
PspPI GGNCC 2 cut(s) 125, 664
PspPPI RGGWCCY 1 cut(s) 664
PsuI RGATCY 1 cut(s) 897
RsaI GTAC 5 cut(s) 109, 509, 1073, 1172, 1357
RsaNI GTAC 5 cut(s) 108, 508, 1072, 1171, 1356
RseI CAYNNNNRTG 1 cut(s) 795
SacI GAGCTC 1 cut(s) 783
SapI GCTCTTC 1 cut(s) 1095
SaqAI TTAA 8 cut(s) 365, 378, 684, 1049, 1140, 1304, 1317, 1475
SatI GCNGC 3 cut(s) 549, 741, 1492
Sau3AI GATC 4 cut(s) 94, 118, 821, 897
Sau96I GGNCC 2 cut(s) 125, 664
SchI GAGTC 2 cut(s) 695, 850
ScrFI CCNGG 3 cut(s) 353, 464, 621
SduI GDGCHC 6 cut(s) 30, 69, 201, 628, 783, 982
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 1 cut(s) 133
SinI GGWCC 2 cut(s) 125, 664
SmiMI CAYNNNNRTG 1 cut(s) 795
SmlI CTYRAG 2 cut(s) 377, 431
SmoI CTYRAG 2 cut(s) 377, 431
SphI GCATGC 1 cut(s) 794
Sse9I AATT 7 cut(s) 36, 402, 608, 744, 846, 1127, 1476
SsiI CCGC 2 cut(s) 727, 741
SspMI CTAG 2 cut(s) 122, 983
SstI GAGCTC 1 cut(s) 783
StyD4I CCNGG 3 cut(s) 351, 462, 619
StyI CCWWGG 2 cut(s) 394, 875
TaaI ACNGT 9 cut(s) 225, 342, 512, 642, 961, 1098, 1279, 1309, 1360
TaiI ACGT 2 cut(s) 198, 286
TaqI TCGA 2 cut(s) 820, 1343
TasI AATT 7 cut(s) 36, 402, 608, 744, 846, 1127, 1476
TatI WGTACW 1 cut(s) 1071
TauI GCSGC 1 cut(s) 743
TfiI GAWTC 2 cut(s) 442, 1160
Tru1I TTAA 8 cut(s) 365, 378, 684, 1049, 1140, 1304, 1317, 1475
Tru9I TTAA 8 cut(s) 365, 378, 684, 1049, 1140, 1304, 1317, 1475
TscAI CASTG 4 cut(s) 460, 633, 964, 1200
TseFI GTSAC 1 cut(s) 961
TseI GCWGC 2 cut(s) 548, 1491
Tsp45I GTSAC 1 cut(s) 961
TspDTI ATGAA 8 cut(s) 432, 679, 799, 1161, 1173, 1449, 1499, 1548
TspRI CASTG 4 cut(s) 460, 633, 964, 1200
Vha464I CTTAAG 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 125, 664
VspI ATTAAT 1 cut(s) 1317
XapI RAATTY 1 cut(s) 608
XceI RCATGY 3 cut(s) 794, 1003, 1031
XmiI GTMKAC 1 cut(s) 1017
XmnI GAANNNNTTC 1 cut(s) 1089
XspI CTAG 2 cut(s) 122, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.