pycom06g00500

GDP-mannose transporter

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
478906 .. 481667
2762 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g00500.2

Sequence Viewer

Length: 1602 bp
ATGGGCACAGCTCGTAGTTTGACGGAGGAAGAGAGAAAGAGGGGCAGGGAAATTACTTGGGATGATAAGGAAGTCTGCGGGCACTATTTAGTTCGGTTTTGTCCGTTCCATCTCTTCGCCAATACTCGAAGCAATCTAGGACAGTGCCCTAAAATCCATGACCCGAAGTTGAAGGAAAGTTTTGAGAAGTCACCACAGCATGATGCATATGTGCCCAAGTTTGAGGCTGAACTTGCTCAGTTTTGTGAGATGTTGGTGATTGATTTGGATAGAAGAGTAAGGCGTGAGCGAGAACACCGTCACCAAGAGGTGGAACCTGCACTACCACATCCACTGTCAATTGAAAAGTCCAAACATTTGTTTATTCTGGAGGAAAAGTTAAAGAAGTTGCTTGCACAAGTGGAGGCCCTTGGTGAATCCAGCAAGATGGATGAAGCTGAAGTGTCCATGAGAGAGATGCCTAATAAAATTGTTGTGGAGAATCCTCAAGTTCGTCAGGGCCGTCAGGCTCAGGGTGGTTCAAGTGCCCCTACTCTTTTTGGTAATATCCAAACAAACTGGTCCAGTGTTATACTCCAGCAGATCTCAGTCTACGGTATAGCTGCTGGTTACTGCTTATCTGCCTCATTGCTTTCCATTATCAACAAGTGGGCTGTCGTGAAATTTCCTTATCCTGGGGCCCTAACTGCTTTACAGTATTTTACAAGTGCTATGGGGGTCCTTGTATGTGGCTGGCTTAAGTTGCTAGAACATGATTCACTTGACCTTCTTACTATGTGGCGCTTCCTACCAGCAGCAGTTATATTCTATCTCTCTCTCTTCACCAACAGTGAGCTCCTTCTTCATGCTAACGTTGACACTTTTATTGTCTTTCGTTCAGTTGTCCCAATTTTTGTTGCACTGGGAGAGACTCTCTTCTTGCACCAACCATGGCCATCAATAAGGACATGGGCCTCACTTGCCACTATTTTTGGAGGAAGTGTGATTTATGTGCTTACAGATTACCAGTTCACAGTCACGGCTTATAGTTGGGCTCTAGCTTACTTGGTAAGCATGTCCATAGATTTTGTCTACATAAAGCATGTGGTAATGACCATCGGCTTAAACACATGGGGTCTTGTATTGTATAACAATCTTGAGGCTCTTCTATTGTTCCCGCTGGAACTACTTGTAATGGGTGAATTGAAGAAGATTAAGCATGAAATCACGGACGAATCAGATTGGTATTCTTTTGATGTGCTTTTGCCTGTGGGGTTATCATGTTTATTTGGTTTGTCTATCTCTTTCTTTGGGTTTTCTTGCCGAAGGGCAATTTCTGCAACTGGATTTACTGTTCTTGGTATAGTGAATAAGCTATTGACTGTTGTGATTAATCTGATTATTTGGGACAAGCATTCAACCATAGTTGGTACAGTGGGGCTGTTAACATGTATGCTAGGCGGTGTTATGTATCAGCAATCTACAAGCAACAAGCCTAAGGTTGTAAATCAGGTGAAAGCACAAGAGGCGGAGGAAGAACAACAAAAGTTAATTGAGATGAACTCCAGCTTAGAAAGCAATAGCAATGAGAAATGGAATGCTGAATCGGAACAGGGAAATTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

534

Amino Acids

60.2

Weight (kDa)

6.0

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 325
AccB7I CCANNNNNTGG 1 cut(s) 310
AccI GTMKAC 2 cut(s) 591, 1071
AciI CCGC 4 cut(s) 78, 1157, 1440, 1508
AclI AACGTT 1 cut(s) 852
AcoI YGGCCR 1 cut(s) 932
AcsI RAATTY 1 cut(s) 662
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 1 cut(s) 1411
AfiI CCNNNNNNNGG 2 cut(s) 310, 674
AflII CTTAAG 1 cut(s) 737
AflIII ACRYGT 1 cut(s) 1427
AgsI TTSAA 5 cut(s) 172, 344, 522, 1186, 1398
AjnI CCWGG 1 cut(s) 673
AloI GAACNNNNNNTCC 2 cut(s) 1317, 1349
AluBI AGCT 7 cut(s) 11, 437, 602, 835, 1040, 1354, 1548
AluI AGCT 7 cut(s) 11, 437, 602, 835, 1040, 1354, 1548
Alw21I GWGCWC 1 cut(s) 837
Alw26I GTCTC 1 cut(s) 902
AoxI GGCC 5 cut(s) 405, 499, 678, 932, 951
ApaI GGGCCC 1 cut(s) 682
ApeKI GCWGC 2 cut(s) 602, 794
ApoI RAATTY 1 cut(s) 662
AseI ATTAAT 1 cut(s) 1371
AspLEI GCGC 1 cut(s) 783
AspS9I GGNCC 7 cut(s) 406, 499, 561, 678, 679, 718, 951
AsuHPI GGTGA 7 cut(s) 183, 268, 293, 425, 814, 1190, 1504
AvaII GGWCC 2 cut(s) 561, 718
AxyI CCTNAGG 1 cut(s) 1476
BaeGI GKGCMC 6 cut(s) 8, 84, 149, 216, 529, 682
BalI TGGCCA 1 cut(s) 934
BanII GRGCYC 3 cut(s) 682, 837, 1036
Bbv12I GWGCWC 1 cut(s) 837
BbvI GCAGC 2 cut(s) 589, 806
BccI CCATC 4 cut(s) 117, 421, 943, 1103
BceAI ACGGC 2 cut(s) 486, 1035
BciT130I CCWGG 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 902
BfaI CTAG 4 cut(s) 137, 746, 1037, 1436
BfoI RGCGCY 1 cut(s) 784
BfrI CTTAAG 1 cut(s) 737
BfuAI ACCTGC 1 cut(s) 325
BglII AGATCT 1 cut(s) 582
BisI GCNGC 2 cut(s) 603, 795
BlsI GCNGC 2 cut(s) 604, 796
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 2 cut(s) 561, 718
BmgT120I GGNCC 7 cut(s) 406, 499, 561, 678, 679, 718, 951
BmiI GGNNCC 4 cut(s) 315, 679, 680, 719
BmrFI CCNGG 1 cut(s) 675
BmrI ACTGGG 1 cut(s) 911
BmsI GCATC 2 cut(s) 193, 447
BmuI ACTGGG 1 cut(s) 911
BplI GAGNNNNNCTC 4 cut(s) 897, 929, 1526, 1558
BpmI CTGGAG 3 cut(s) 389, 560, 1528
Bpu10I CCTNAGC 1 cut(s) 510
BpuEI CTTGAG 2 cut(s) 471, 1157
BsaJI CCNNGG 3 cut(s) 409, 674, 929
BsaXI ACNNNNNCTCC 4 cut(s) 362, 392, 966, 996
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 674
Bse1I ACTGG 5 cut(s) 563, 564, 906, 1006, 1327
Bse21I CCTNAGG 1 cut(s) 1476
Bse3DI GCAATG 2 cut(s) 626, 1570
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 3 cut(s) 409, 674, 929
BseGI GGATG 3 cut(s) 67, 328, 436
BseLI CCNNNNNNNGG 2 cut(s) 310, 674
BseMI GCAATG 2 cut(s) 626, 1570
BseMII CTCAG 3 cut(s) 251, 524, 600
BseNI ACTGG 5 cut(s) 563, 564, 906, 1006, 1327
BseSI GKGCMC 6 cut(s) 8, 84, 149, 216, 529, 682
BseXI GCAGC 2 cut(s) 589, 806
BsgI GTGCAG 1 cut(s) 303
BshFI GGCC 5 cut(s) 407, 501, 680, 934, 953
BsiHKAI GWGCWC 1 cut(s) 837
BslFI GGGAC 2 cut(s) 869, 1400
BslI CCNNNNNNNGG 2 cut(s) 310, 674
BsmAI GTCTC 1 cut(s) 902
BsmFI GGGAC 2 cut(s) 869, 1400
BsmI GAATGC 2 cut(s) 1393, 1582
BsnI GGCC 5 cut(s) 407, 501, 680, 934, 953
Bsp120I GGGCCC 1 cut(s) 678
Bsp1286I GDGCHC 8 cut(s) 8, 84, 149, 216, 529, 682, 837, 1036
Bsp143I GATC 1 cut(s) 582
Bsp19I CCATGG 1 cut(s) 929
BspACI CCGC 4 cut(s) 78, 1157, 1440, 1508
BspANI GGCC 5 cut(s) 407, 501, 680, 934, 953
BspCNI CTCAG 3 cut(s) 250, 523, 599
BspLI GGNNCC 4 cut(s) 315, 679, 680, 719
BspMI ACCTGC 1 cut(s) 325
BspQI GCTCTTC 1 cut(s) 1149
BspTI CTTAAG 1 cut(s) 737
BsrDI GCAATG 2 cut(s) 626, 1570
BsrI ACTGG 5 cut(s) 563, 564, 906, 1006, 1327
BssECI CCNNGG 3 cut(s) 409, 674, 929
BssMI GATC 1 cut(s) 582
BssT1I CCWWGG 2 cut(s) 409, 929
Bst2UI CCWGG 1 cut(s) 675
Bst6I CTCTTC 6 cut(s) 24, 119, 268, 824, 920, 1149
BstAFI CTTAAG 1 cut(s) 737
BstAPI GCANNNNNTGC 1 cut(s) 1316
BstC8I GCNNGC 3 cut(s) 80, 393, 734
BstDEI CTNAG 5 cut(s) 237, 510, 586, 1476, 1549
BstDSI CCRYGG 1 cut(s) 929
BstF5I GGATG 3 cut(s) 67, 328, 436
BstH2I RGCGCY 1 cut(s) 784
BstHHI GCGC 1 cut(s) 783
BstKTI GATC 1 cut(s) 585
BstMAI GTCTC 1 cut(s) 902
BstMBI GATC 1 cut(s) 582
BstMWI GCNNNNNNNGC 7 cut(s) 233, 686, 742, 959, 1316, 1505, 1554
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 3 cut(s) 1057, 1085, 1431
BstSCI CCNGG 1 cut(s) 673
BstSLI GKGCMC 6 cut(s) 8, 84, 149, 216, 529, 682
BstV1I GCAGC 2 cut(s) 589, 806
BstX2I RGATCY 1 cut(s) 582
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 1 cut(s) 582
Bsu36I CCTNAGG 1 cut(s) 1476
BsuRI GGCC 5 cut(s) 407, 501, 680, 934, 953
BtgI CCRYGG 1 cut(s) 929
BtsCI GGATG 3 cut(s) 67, 328, 436
BtsIMutI CAGTG 6 cut(s) 149, 332, 571, 835, 899, 1419
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 3 cut(s) 80, 393, 734
CfoI GCGC 1 cut(s) 783
Cfr13I GGNCC 7 cut(s) 406, 499, 561, 678, 679, 718, 951
Csp6I GTAC 1 cut(s) 1410
CspCI CAANNNNNGTGG 2 cut(s) 952, 987
CviQI GTAC 1 cut(s) 1410
DdeI CTNAG 5 cut(s) 237, 510, 586, 1476, 1549
DpnI GATC 1 cut(s) 584
DpnII GATC 1 cut(s) 582
EaeI YGGCCR 1 cut(s) 932
Eam1104I CTCTTC 6 cut(s) 24, 119, 268, 824, 920, 1149
EarI CTCTTC 6 cut(s) 24, 119, 268, 824, 920, 1149
EciI GGCGGA 1 cut(s) 1523
Ecl136II GAGCTC 1 cut(s) 835
Eco130I CCWWGG 2 cut(s) 409, 929
Eco24I GRGCYC 3 cut(s) 682, 837, 1036
Eco47I GGWCC 2 cut(s) 561, 718
Eco53kI GAGCTC 1 cut(s) 835
Eco57I CTGAAG 1 cut(s) 459
Eco81I CCTNAGG 1 cut(s) 1476
EcoICRI GAGCTC 1 cut(s) 835
EcoO109I RGGNCCY 4 cut(s) 406, 678, 679, 718
EcoRII CCWGG 1 cut(s) 673
EcoT14I CCWWGG 2 cut(s) 409, 929
EcoT22I ATGCAT 1 cut(s) 208
EcoT38I GRGCYC 3 cut(s) 682, 837, 1036
ErhI CCWWGG 2 cut(s) 409, 929
FaqI GGGAC 2 cut(s) 869, 1400
FauI CCCGC 2 cut(s) 71, 1164
FauNDI CATATG 1 cut(s) 208
FblI GTMKAC 2 cut(s) 591, 1071
Fnu4HI GCNGC 2 cut(s) 603, 795
FokI GGATG 3 cut(s) 74, 315, 443
FriOI GRGCYC 3 cut(s) 682, 837, 1036
Fsp4HI GCNGC 2 cut(s) 603, 795
FspBI CTAG 4 cut(s) 137, 746, 1037, 1436
GlaI GCGC 1 cut(s) 782
GluI GCNGC 2 cut(s) 603, 795
GsuI CTGGAG 3 cut(s) 389, 560, 1528
HaeII RGCGCY 1 cut(s) 784
HaeIII GGCC 5 cut(s) 407, 501, 680, 934, 953
HhaI GCGC 1 cut(s) 783
Hin6I GCGC 1 cut(s) 781
HinP1I GCGC 1 cut(s) 781
HincII GTYRAC 2 cut(s) 856, 1425
HindII GTYRAC 2 cut(s) 856, 1425
HinfI GANTC 6 cut(s) 416, 481, 755, 910, 1214, 1583
HpaI GTTAAC 1 cut(s) 1425
HphI GGTGA 7 cut(s) 183, 268, 293, 425, 814, 1190, 1504
Hpy166II GTNNAC 5 cut(s) 592, 856, 1011, 1072, 1425
Hpy188I TCNGA 3 cut(s) 1219, 1377, 1588
Hpy188III TCNNGA 3 cut(s) 368, 658, 1136
Hpy8I GTNNAC 5 cut(s) 592, 856, 1011, 1072, 1425
HpyAV CCTTC 4 cut(s) 166, 776, 848, 1299
HpyCH4IV ACGT 1 cut(s) 852
HpyCH4V TGCA 6 cut(s) 206, 320, 395, 899, 922, 1319
HpyF10VI GCNNNNNNNGC 7 cut(s) 233, 686, 742, 959, 1316, 1505, 1554
HpyF3I CTNAG 5 cut(s) 237, 510, 586, 1476, 1549
HpySE526I ACGT 1 cut(s) 852
HspAI GCGC 1 cut(s) 781
KspAI GTTAAC 1 cut(s) 1425
Kzo9I GATC 1 cut(s) 582
LguI GCTCTTC 1 cut(s) 1149
LmnI GCTCC 1 cut(s) 840
Lsp1109I GCAGC 2 cut(s) 589, 806
LweI GCATC 2 cut(s) 193, 447
MaeI CTAG 4 cut(s) 137, 746, 1037, 1436
MaeII ACGT 1 cut(s) 852
MaeIII GTNAC 4 cut(s) 189, 299, 608, 1015
MalI GATC 1 cut(s) 584
MboI GATC 1 cut(s) 582
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 582
MhlI GDGCHC 8 cut(s) 8, 84, 149, 216, 529, 682, 837, 1036
MlsI TGGCCA 1 cut(s) 934
MluCI AATT 9 cut(s) 51, 339, 468, 662, 888, 1181, 1311, 1530, 1597
MluNI TGGCCA 1 cut(s) 934
MlyI GAGTC 1 cut(s) 904
Mox20I TGGCCA 1 cut(s) 934
Mph1103I ATGCAT 1 cut(s) 208
MscI TGGCCA 1 cut(s) 934
MseI TTAA 7 cut(s) 380, 738, 1103, 1194, 1371, 1424, 1529
Msp20I TGGCCA 1 cut(s) 934
MspA1I CMGCKG 1 cut(s) 1159
MspCI CTTAAG 1 cut(s) 737
MspR9I CCNGG 1 cut(s) 675
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 2 cut(s) 1393, 1582
MvaI CCWGG 1 cut(s) 675
MwoI GCNNNNNNNGC 7 cut(s) 233, 686, 742, 959, 1316, 1505, 1554
NcoI CCATGG 1 cut(s) 929
NdeI CATATG 1 cut(s) 208
NdeII GATC 1 cut(s) 582
NlaIV GGNNCC 4 cut(s) 315, 679, 680, 719
NmuCI GTSAC 3 cut(s) 189, 299, 1015
NsiI ATGCAT 1 cut(s) 208
NspI RCATGY 3 cut(s) 1057, 1085, 1431
PciI ACATGT 1 cut(s) 1427
PciSI GCTCTTC 1 cut(s) 1149
PcsI WCGNNNNNNNCGW 1 cut(s) 499
PctI GAATGC 2 cut(s) 1393, 1582
PfeI GAWTC 5 cut(s) 416, 481, 755, 1214, 1583
PflMI CCANNNNNTGG 1 cut(s) 310
PkrI GCNGC 2 cut(s) 604, 796
PleI GAGTC 1 cut(s) 904
PpsI GAGTC 1 cut(s) 904
PpuMI RGGWCCY 1 cut(s) 718
PscI ACATGT 1 cut(s) 1427
PshBI ATTAAT 1 cut(s) 1371
Psp124BI GAGCTC 1 cut(s) 837
Psp1406I AACGTT 1 cut(s) 852
Psp5II RGGWCCY 1 cut(s) 718
Psp6I CCWGG 1 cut(s) 673
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 4 cut(s) 315, 679, 680, 719
PspOMI GGGCCC 1 cut(s) 678
PspPI GGNCC 7 cut(s) 406, 499, 561, 678, 679, 718, 951
PspPPI RGGWCCY 1 cut(s) 718
PsrI GAACNNNNNNTAC 2 cut(s) 306, 338
PsuI RGATCY 1 cut(s) 582
RsaI GTAC 1 cut(s) 1411
RsaNI GTAC 1 cut(s) 1410
SacI GAGCTC 1 cut(s) 837
SapI GCTCTTC 1 cut(s) 1149
SaqAI TTAA 7 cut(s) 380, 738, 1103, 1194, 1371, 1424, 1529
SatI GCNGC 2 cut(s) 603, 795
Sau3AI GATC 1 cut(s) 582
Sau96I GGNCC 7 cut(s) 406, 499, 561, 678, 679, 718, 951
SchI GAGTC 1 cut(s) 904
ScrFI CCNGG 1 cut(s) 675
SduI GDGCHC 8 cut(s) 8, 84, 149, 216, 529, 682, 837, 1036
SfaNI GCATC 2 cut(s) 193, 447
SinI GGWCC 2 cut(s) 561, 718
SmlI CTYRAG 3 cut(s) 486, 737, 1136
SmoI CTYRAG 3 cut(s) 486, 737, 1136
Sse9I AATT 9 cut(s) 51, 339, 468, 662, 888, 1181, 1311, 1530, 1597
SsiI CCGC 4 cut(s) 78, 1157, 1440, 1508
SspMI CTAG 4 cut(s) 137, 746, 1037, 1436
SstI GAGCTC 1 cut(s) 837
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 2 cut(s) 409, 929
TaiI ACGT 1 cut(s) 855
TaqI TCGA 1 cut(s) 127
TasI AATT 9 cut(s) 51, 339, 468, 662, 888, 1181, 1311, 1530, 1597
TfiI GAWTC 5 cut(s) 416, 481, 755, 1214, 1583
Tru1I TTAA 7 cut(s) 380, 738, 1103, 1194, 1371, 1424, 1529
Tru9I TTAA 7 cut(s) 380, 738, 1103, 1194, 1371, 1424, 1529
TscAI CASTG 6 cut(s) 149, 339, 571, 835, 906, 1419
TseFI GTSAC 3 cut(s) 189, 299, 1015
TseI GCWGC 2 cut(s) 602, 794
Tsp45I GTSAC 3 cut(s) 189, 299, 1015
TspDTI ATGAA 4 cut(s) 447, 833, 1215, 1553
TspGWI ACGGA 3 cut(s) 38, 93, 1223
TspRI CASTG 6 cut(s) 149, 339, 571, 835, 906, 1419
Van91I CCANNNNNTGG 1 cut(s) 310
Vha464I CTTAAG 1 cut(s) 737
VpaK11BI GGWCC 2 cut(s) 561, 718
VspI ATTAAT 1 cut(s) 1371
XapI RAATTY 1 cut(s) 662
XceI RCATGY 3 cut(s) 1057, 1085, 1431
XmiI GTMKAC 2 cut(s) 591, 1071
XspI CTAG 4 cut(s) 137, 746, 1037, 1436
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.