Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011307

Physical Location & Seq

Genomic Coordinates Forward (+)

16644957 .. 16648119

Gene Structure 3163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G152800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGATGAAGCTGAAGTGCCCATGAAAAAGATGCCTAATAATAATGGTGCGGAGAATCCTGAAGTTGGTCAGGGCCCTCAGGCCCAGGGTGGTTCTAGTGCCCCTACTCTTGTCAGTAATACCCAATCAAACTGGTATAGCGTCTTTCTCCAGCAAATCTCAGTCTATGGTATTGCTGCTGGTTATTGCTTATCTGCCTCATTGCTTTCCATCATCAACAAATGGGCTGTCATGAAATTTCCTTATCCTGGGGCACTAACTGCTCTGCAGTATATGACAAGTGCTATTGGTGTCCTCGTTTGTGGCTGGCTTAAATTGATAGAGTATGATTCACTTGACCTACTTACTATGTGGCGCTTCCTACCGGCAGCAATTATATTCTACCTCTCTCTCTTCACCAACAGTGAGCTGCTTCTCCATGCTAATGTTGACACTTTCATCGTCTTTCGTTCAGTTGTTCCGATCTTTGTTGCGATAGGAGAGACAATCTTCTTGCACCAACCATGGCCATCAATTAGGACATGGACCTCACTTGTCACTATTTTTGGGGGAAGTGTGATTTATGTTCTAACAGATTACAAGTTCACAGTAACGGCTTATAGTTGGGCTCTAGCTTACTTGGTAAGCATGTCCATAGACTTTGTCTACATAAAGCATGTGGTAATGACCATTGGTTTAAATACATGGGGTCTTGTACTGTATAACAATCTCGAGGCTCTTCTACTGTTTCCATTAGAACTGCTTGTAATGGGTGAATTGAAGAAGATTAAGCATGAAATCTCAGATGAATCCGATTGGTATTCTCTTGAGGTGGTTTTGCCAGTGGGGTTATCGTGTTTATTTGGTTTATCCATCTCTTTCTTTGGGTTTTCTTGCCGAAGGGCAATTTCTGCTACTGGATTTACTGTTCTTGGTATAGTGAACAAGCTATTAACTGTTGTGATTAATCTCGTTATTTGGGACAAGCATTCAACCTTCGTTGGTACATTGGGCCTGTTGATATGTATGGTAGGTGGTGTTATGTATCAGCAATCTACAAGCAACAAGCCTAAGGATGTGAATCAAGCAAAAGCACGAGAGACTGAGGAAGAAGAGCGAAAGTTAATTGAAATGGAAAGCAGCTTAGAAAGCAATAACAATGAGAAATTGCCTGTTGAATCTGAAGGGGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006810 GO:0008150 GO:0015780 GO:0015931 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:1901264

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

392

Amino Acids

43.41

Weight (kDa)

5.16

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76340
fragaria_vesca	FvH4_5g25930 FvH4_5g25930 FvH4_5g25930
malus_domestica	MD06G1005300.v1.1
prunus_persica	Prupe.3G152800_v2.0.a1 Prupe.5G006600_v2.0.a1 Prupe.5G006600_v2.0.a1 Prupe.5G006600_v2.0.a1
pyrus_communis	pycom06g00500 pycom16g26160
rosa_chinensis	RchiOBHm_Chr7g0216461
rosa_laevigata	RLG00000002569
rosa_multiflora	Rmu_ssc0000454.1_g000027
rosa_roxburghii	Rroxscaffold_3G00243220
rosa_rugosa	Rorug07G0160400
rosa_samantha	Rh7AG299600 Rh7BG291100 Rh7DG300900
rosa_wichuraiana	Rw7G025460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	645
AciI	CCGC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	506
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	2 cut(s)	33, 81
AfaI	GTAC	2 cut(s)	696, 985
AfiI	CCNNNNNNNGG	2 cut(s)	65, 248
AgsI	TTSAA	4 cut(s)	760, 972, 1109, 1157
AjnI	CCWGG	2 cut(s)	84, 247
AloI	GAACNNNNNNTCC	2 cut(s)	891, 923
AluBI	AGCT	5 cut(s)	11, 409, 614, 928, 1122
AluI	AGCT	5 cut(s)	11, 409, 614, 928, 1122
Alw26I	GTCTC	2 cut(s)	476, 1073
Ama87I	CYCGRG	1 cut(s)	710
AoxI	GGCC	4 cut(s)	73, 81, 506, 991
ApaI	GGGCCC	1 cut(s)	77
ApeKI	GCWGC	4 cut(s)	176, 368, 409, 1119
ApoI	RAATTY	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
AseI	ATTAAT	1 cut(s)	945
AspLEI	GCGC	1 cut(s)	357
AspS9I	GGNCC	5 cut(s)	73, 74, 82, 525, 991
AsuHPI	GGTGA	2 cut(s)	388, 764
AvaI	CYCGRG	1 cut(s)	710
AvaII	GGWCC	1 cut(s)	525
AxyI	CCTNAGG	2 cut(s)	78, 1050
BaeGI	GKGCMC	4 cut(s)	21, 77, 103, 256
BalI	TGGCCA	1 cut(s)	508
BanII	GRGCYC	2 cut(s)	77, 610
BauI	CACGAG	1 cut(s)	1074
BbvI	GCAGC	4 cut(s)	163, 380, 396, 1131
BccI	CCATC	3 cut(s)	218, 517, 860
BceAI	ACGGC	1 cut(s)	609
BciT130I	CCWGG	2 cut(s)	86, 249
BcoDI	GTCTC	2 cut(s)	476, 1073
BfaI	CTAG	2 cut(s)	96, 611
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	4 cut(s)	177, 369, 410, 1120
BlsI	GCNGC	4 cut(s)	178, 370, 411, 1121
Bme1390I	CCNGG	2 cut(s)	86, 249
Bme18I	GGWCC	1 cut(s)	525
BmeT110I	CYCGRG	1 cut(s)	710
BmgT120I	GGNCC	5 cut(s)	73, 74, 82, 525, 991
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	86, 249
BmsI	GCATC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	827
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaJI	CCNNGG	4 cut(s)	84, 85, 248, 503
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 248
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	3 cut(s)	137, 821, 901
Bse21I	CCTNAGG	2 cut(s)	78, 1050
Bse3DI	GCAATG	1 cut(s)	200
Bse8I	GATNNNNATC	1 cut(s)	1059
BseBI	CCWGG	2 cut(s)	86, 249
BseDI	CCNNGG	4 cut(s)	84, 85, 248, 503
BseGI	GGATG	2 cut(s)	10, 1060
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	2 cut(s)	65, 248
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	4 cut(s)	92, 174, 795, 1074
BseNI	ACTGG	3 cut(s)	137, 821, 901
BseSI	GKGCMC	4 cut(s)	21, 77, 103, 256
BseXI	GCAGC	4 cut(s)	163, 380, 396, 1131
BshFI	GGCC	4 cut(s)	75, 83, 508, 993
BsiHKCI	CYCGRG	1 cut(s)	710
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	974
BslI	CCNNNNNNNGG	2 cut(s)	65, 248
BsmAI	GTCTC	2 cut(s)	476, 1073
BsmFI	GGGAC	1 cut(s)	974
BsmI	GAATGC	1 cut(s)	967
BsnI	GGCC	4 cut(s)	75, 83, 508, 993
BsoBI	CYCGRG	1 cut(s)	710
Bsp120I	GGGCCC	1 cut(s)	73
Bsp1286I	GDGCHC	5 cut(s)	21, 77, 103, 256, 610
Bsp143I	GATC	1 cut(s)	462
Bsp19I	CCATGG	1 cut(s)	503
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	4 cut(s)	75, 83, 508, 993
BspCNI	CTCAG	4 cut(s)	91, 173, 794, 1075
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	270
BspQI	GCTCTTC	2 cut(s)	723, 1086
BsrDI	GCAATG	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	364
BsrI	ACTGG	3 cut(s)	137, 821, 901
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	4 cut(s)	84, 85, 248, 503
BssMI	GATC	1 cut(s)	462
BssSI	CACGAG	1 cut(s)	1074
BssT1I	CCWWGG	1 cut(s)	503
Bst2BI	CACGAG	1 cut(s)	1074
Bst2UI	CCWGG	2 cut(s)	86, 249
Bst4CI	ACNGT	6 cut(s)	404, 589, 699, 726, 907, 937
Bst6I	CTCTTC	3 cut(s)	398, 723, 1086
BstAPI	GCANNNNNTGC	2 cut(s)	260, 890
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	6 cut(s)	78, 160, 781, 1050, 1083, 1123
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	10, 1060
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	1 cut(s)	357
BstKTI	GATC	1 cut(s)	465
BstMAI	GTCTC	2 cut(s)	476, 1073
BstMBI	GATC	1 cut(s)	462
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 890, 1128
BstNI	CCWGG	2 cut(s)	86, 249
BstNSI	RCATGY	2 cut(s)	631, 659
BstSCI	CCNGG	2 cut(s)	84, 247
BstSFI	CTRYAG	1 cut(s)	266
BstSLI	GKGCMC	4 cut(s)	21, 77, 103, 256
BstV1I	GCAGC	4 cut(s)	163, 380, 396, 1131
Bsu36I	CCTNAGG	2 cut(s)	78, 1050
BsuRI	GGCC	4 cut(s)	75, 83, 508, 993
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	2 cut(s)	10, 1060
BtsIMutI	CAGTG	2 cut(s)	409, 828
Cac8I	GCNNGC	1 cut(s)	308
CciI	TCATGA	1 cut(s)	231
CfoI	GCGC	1 cut(s)	357
Cfr10I	RCCGGY	1 cut(s)	364
Cfr13I	GGNCC	5 cut(s)	73, 74, 82, 525, 991
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	695, 984
CviAII	CATG	9 cut(s)	22, 232, 419, 504, 522, 628, 656, 684, 773
CviQI	GTAC	2 cut(s)	695, 984
DdeI	CTNAG	6 cut(s)	78, 160, 781, 1050, 1083, 1123
DpnI	GATC	1 cut(s)	464
DpnII	GATC	1 cut(s)	462
DraI	TTTAAA	1 cut(s)	678
EaeI	YGGCCR	1 cut(s)	506
Eam1104I	CTCTTC	3 cut(s)	398, 723, 1086
EarI	CTCTTC	3 cut(s)	398, 723, 1086
Eco130I	CCWWGG	1 cut(s)	503
Eco24I	GRGCYC	2 cut(s)	77, 610
Eco47I	GGWCC	1 cut(s)	525
Eco57I	CTGAAG	2 cut(s)	33, 81
Eco81I	CCTNAGG	2 cut(s)	78, 1050
Eco88I	CYCGRG	1 cut(s)	710
EcoO109I	RGGNCCY	2 cut(s)	73, 74
EcoRII	CCWGG	2 cut(s)	84, 247
EcoT14I	CCWWGG	1 cut(s)	503
EcoT38I	GRGCYC	2 cut(s)	77, 610
ErhI	CCWWGG	1 cut(s)	503
FaeI	CATG	9 cut(s)	25, 235, 422, 507, 525, 631, 659, 687, 776
FaqI	GGGAC	1 cut(s)	974
FatI	CATG	9 cut(s)	21, 231, 418, 503, 521, 627, 655, 683, 772
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	4 cut(s)	177, 369, 410, 1120
FokI	GGATG	2 cut(s)	17, 1067
FriOI	GRGCYC	2 cut(s)	77, 610
Fsp4HI	GCNGC	4 cut(s)	177, 369, 410, 1120
FspBI	CTAG	2 cut(s)	96, 611
GlaI	GCGC	1 cut(s)	356
GluI	GCNGC	4 cut(s)	177, 369, 410, 1120
GsuI	CTGGAG	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	4 cut(s)	75, 83, 508, 993
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	357
Hin1II	CATG	9 cut(s)	25, 235, 422, 507, 525, 631, 659, 687, 776
Hin6I	GCGC	1 cut(s)	355
HinP1I	GCGC	1 cut(s)	355
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	5 cut(s)	55, 329, 788, 1060, 1157
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	2 cut(s)	388, 764
Hpy166II	GTNNAC	4 cut(s)	430, 585, 646, 922
Hpy188I	TCNGA	4 cut(s)	462, 784, 793, 1162
Hpy188III	TCNNGA	4 cut(s)	59, 232, 710, 806
Hpy8I	GTNNAC	4 cut(s)	430, 585, 646, 922
HpyAV	CCTTC	3 cut(s)	873, 985, 1157
HpyCH4III	ACNGT	6 cut(s)	404, 589, 699, 726, 907, 937
HpyCH4V	TGCA	2 cut(s)	268, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 890, 1128
HpyF3I	CTNAG	6 cut(s)	78, 160, 781, 1050, 1083, 1123
Hsp92II	CATG	9 cut(s)	25, 235, 422, 507, 525, 631, 659, 687, 776
HspAI	GCGC	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	462
LguI	GCTCTTC	2 cut(s)	723, 1086
Lsp1109I	GCAGC	4 cut(s)	163, 380, 396, 1131
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	2 cut(s)	96, 611
MaeIII	GTNAC	2 cut(s)	535, 589
MalI	GATC	1 cut(s)	464
MboI	GATC	1 cut(s)	462
MboII	GAAGA	7 cut(s)	385, 481, 710, 772, 775, 1100, 1103
MhlI	GDGCHC	5 cut(s)	21, 77, 103, 256, 610
MlsI	TGGCCA	1 cut(s)	508
MluCI	AATT	8 cut(s)	236, 314, 372, 513, 755, 885, 1104, 1145
MluNI	TGGCCA	1 cut(s)	508
MnlI	CCTC	8 cut(s)	87, 208, 305, 395, 538, 706, 802, 1078
Mox20I	TGGCCA	1 cut(s)	508
MscI	TGGCCA	1 cut(s)	508
MseI	TTAA	6 cut(s)	312, 677, 768, 932, 945, 1103
MslI	CAYNNNNRTG	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	508
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	2 cut(s)	86, 249
Mva1269I	GAATGC	1 cut(s)	967
MvaI	CCWGG	2 cut(s)	86, 249
MwoI	GCNNNNNNNGC	3 cut(s)	260, 890, 1128
NcoI	CCATGG	1 cut(s)	503
NdeII	GATC	1 cut(s)	462
NlaIII	CATG	9 cut(s)	25, 235, 422, 507, 525, 631, 659, 687, 776
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	535
NspI	RCATGY	2 cut(s)	631, 659
PaeR7I	CTCGAG	1 cut(s)	710
PagI	TCATGA	1 cut(s)	231
PasI	CCCWGGG	1 cut(s)	85
PciSI	GCTCTTC	2 cut(s)	723, 1086
PctI	GAATGC	1 cut(s)	967
PfeI	GAWTC	5 cut(s)	55, 329, 788, 1060, 1157
PflFI	GACNNNGTC	1 cut(s)	641
PkrI	GCNGC	4 cut(s)	178, 370, 411, 1121
PshBI	ATTAAT	1 cut(s)	945
Psp6I	CCWGG	2 cut(s)	84, 247
PspGI	CCWGG	2 cut(s)	84, 247
PspN4I	GGNNCC	1 cut(s)	75
PspOMI	GGGCCC	1 cut(s)	73
PspPI	GGNCC	5 cut(s)	73, 74, 82, 525, 991
PstI	CTGCAG	1 cut(s)	270
PsyI	GACNNNGTC	1 cut(s)	641
RsaI	GTAC	2 cut(s)	696, 985
RsaNI	GTAC	2 cut(s)	695, 984
RseI	CAYNNNNRTG	1 cut(s)	423
SapI	GCTCTTC	2 cut(s)	723, 1086
SaqAI	TTAA	6 cut(s)	312, 677, 768, 932, 945, 1103
SatI	GCNGC	4 cut(s)	177, 369, 410, 1120
Sau3AI	GATC	1 cut(s)	462
Sau96I	GGNCC	5 cut(s)	73, 74, 82, 525, 991
ScrFI	CCNGG	2 cut(s)	86, 249
SduI	GDGCHC	5 cut(s)	21, 77, 103, 256, 610
SfaNI	GCATC	1 cut(s)	21
SfcI	CTRYAG	1 cut(s)	266
Sfr274I	CTCGAG	1 cut(s)	710
SinI	GGWCC	1 cut(s)	525
SlaI	CTCGAG	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	2 cut(s)	710, 806
SmoI	CTYRAG	2 cut(s)	710, 806
Sse9I	AATT	8 cut(s)	236, 314, 372, 513, 755, 885, 1104, 1145
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	2 cut(s)	96, 611
StyD4I	CCNGG	2 cut(s)	84, 247
StyI	CCWWGG	1 cut(s)	503
TaaI	ACNGT	6 cut(s)	404, 589, 699, 726, 907, 937
TaqI	TCGA	1 cut(s)	711
TasI	AATT	8 cut(s)	236, 314, 372, 513, 755, 885, 1104, 1145
TatI	WGTACW	1 cut(s)	694
TfiI	GAWTC	5 cut(s)	55, 329, 788, 1060, 1157
Tru1I	TTAA	6 cut(s)	312, 677, 768, 932, 945, 1103
Tru9I	TTAA	6 cut(s)	312, 677, 768, 932, 945, 1103
TscAI	CASTG	2 cut(s)	409, 828
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	4 cut(s)	176, 368, 409, 1119
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	6 cut(s)	21, 38, 248, 427, 789, 801
TspRI	CASTG	2 cut(s)	409, 828
Tth111I	GACNNNGTC	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	525
VspI	ATTAAT	1 cut(s)	945
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	2 cut(s)	631, 659
XhoI	CTCGAG	1 cut(s)	710
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	2 cut(s)	96, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.