AT1G77670

DegT/DnrJ/EryC1/StrS aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012279
Physical Location & Seq
Reverse (-)
29188843 .. 29191079
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77670.1

Sequence Viewer

Length: 1323 bp
ATGTACCTGGACATAAATGGTGTGATGATCAAACAGTTTAGCTTCAAAGCCTCTCTTCTCCCATTCTCTTCTAATTTCCGACAAAGCTCCGCCAAAATCCATCGTCCTATCGGAGCCACCATGACCACAGTTTCGACTCAGAACGAGTCTACTCAAAAACCCGTCCAGGTGGCGAAGAGATTAGAGAAGTTCAAGACTACTATTTTCACTCAAATGAGCATATTGGCAGTTAAACATGGAGCGATCAATTTAGGCCAAGGCTTTCCCAATTTCGACGGTCCTGATTTTGTTAAAGAAGCTGCGATCCAAGCTATTAAAGATGGTAAAAACCAGTATGCTCGTGGATACGGCATTCCTCAGCTCAACTCTGCTATAGCTGCGCGGTTTCGTGAAGATACGGGTCTTGTTGTTGATCCTGAGAAAGAAGTTACTGTTACATCTGGTTGCACAGAAGCCATAGCTGCAGCTATGTTGGGTTTAATAAACCCTGGTGATGAAGTCATTCTCTTTGCACCGTTTTATGATTCCTATGAAGCAACACTCTCTATGGCTGGTGCTAAAGTAAAAGGAATCACTTTACGTCCACCGGACTTCTCCATCCCTTTGGAAGAGCTTAAAGCTGCGGTAACTAACAAGACTCGAGCCATCCTTATGAACACTCCGCACAACCCGACCGGGAAGATGTTCACTAGGGAGGAGCTTGAAACCATTGCATCTCTCTGCATTGAAAACGATGTGCTTGTGTTCTCGGATGAAGTATACGATAAGCTTGCGTTTGAAATGGATCACATTTCTATAGCTTCTCTTCCCGGTATGTATGAAAGAACTGTGACCATGAATTCCCTGGGAAAGACTTTCTCTTTAACCGGATGGAAGATCGGCTGGGCGATTGCGCCGCCTCATCTGACTTGGGGAGTTCGACAAGCACACTCTTACCTCACATTCGCCACATCAACACCAGCACAATGGGCAGCCGTTGCAGCTCTCAAGGCACCAGAGTCTTACTTCAAAGAGCTGAAAAGAGATTACAATGTGAAAAAGGAGACTCTGGTTAAGGGTTTGAAGGAAGTCGGATTTACAGTGTTCCCATCGAGCGGGACTTACTTTGTGGTTGCTGATCACACTCCATTTGGAATGGAGAACGATGTTGCTTTCTGTGAGTATCTTATTGAAGAAGTTGGGGTCGTTGCGATCCCAACGAGCGTCTTTTATCTGAATCCAGAAGAAGGGAAGAATTTGGTTAGGTTTGCGTTCTGTAAAGACGAAGAGACGTTGCGTGGTGCAATTGAGAGGATGAAGCAGAAGCTTAAGAGAAAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005488 GO:0008144 GO:0008483 GO:0010326 GO:0016740 GO:0016769 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

440

Amino Acids

48.71

Weight (kDa)

7.64

Isoelectric Point (pI)

30.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 82 - 431 3.4e-70 Aminotransferase class I and II
Aminotran_5 PF00266 137 - 253 7.8e-07 Aminotransferase class-V
Cys_Met_Meta_PP PF01053 141 - 253 2.7e-08 Cys/Met metabolism PLP-dependent enzyme
DegT_DnrJ_EryC1 PF01041 141 - 251 5e-08 DegT/DnrJ/EryC1/StrS aminotransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77670
fragaria_vesca FvH4_2g26550 FvH4_2g26550 FvH4_2g26550
malus_domestica MD08G1166900.v1.1 MD15G1353000.v1.1
prunus_persica Prupe.1G501400_v2.0.a1
pyrus_communis pycom08g14300 pycom15g31620
rosa_chinensis RchiOBHm_Chr6g0295421
rosa_laevigata RLG00000011805
rosa_multiflora Rmu_sc0003058.1_g000002
rosa_roxburghii Rroxscaffold_7G00172510
rosa_rugosa Rorug06G0250500
rosa_samantha Rh6AG363900 Rh6BG372100 Rh6CG378500 Rh6DG364900
rosa_wichuraiana Rw6G031770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 991
AccBSI CCGCTC 1 cut(s) 1095
AccI GTMKAC 2 cut(s) 149, 759
AccII CGCG 1 cut(s) 382
AciI CCGC 6 cut(s) 90, 382, 623, 662, 896, 1095
AclWI GGATC 4 cut(s) 298, 407, 792, 1186
AcsI RAATTY 2 cut(s) 838, 1234
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 1094, 1226
AflII CTTAAG 1 cut(s) 1307
AgsI TTSAA 8 cut(s) 46, 193, 704, 728, 779, 1009, 1063, 1172
AjnI CCWGG 4 cut(s) 6, 165, 487, 843
Alw26I GTCTC 2 cut(s) 1037, 1262
AlwI GGATC 4 cut(s) 298, 407, 792, 1186
Ama87I CYCGRG 1 cut(s) 639
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 7 cut(s) 299, 377, 461, 464, 620, 971, 980
ApoI RAATTY 2 cut(s) 838, 1234
ArsI GACNNNNNNTTYG 2 cut(s) 115, 147
Asp700I GAANNNNTTC 2 cut(s) 501, 683
AspLEI GCGC 2 cut(s) 382, 895
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 2 cut(s) 676, 810
AsuHPI GGTGA 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 639
AvaII GGWCC 1 cut(s) 278
BanI GGYRCC 1 cut(s) 991
BauI CACGAG 1 cut(s) 339
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 7 cut(s) 286, 364, 448, 476, 607, 983, 992
BccI CCATC 6 cut(s) 108, 314, 605, 653, 864, 1096
BceAI ACGGC 2 cut(s) 364, 959
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 4 cut(s) 8, 167, 489, 845
BciVI GTATCC 1 cut(s) 338
BclI TGATCA 2 cut(s) 27, 1117
BcnI CCSGG 2 cut(s) 676, 810
BcoDI GTCTC 2 cut(s) 1037, 1262
BfaI CTAG 1 cut(s) 690
BfmI CTRYAG 3 cut(s) 372, 462, 795
BfrI CTTAAG 1 cut(s) 1307
BfuI GTATCC 1 cut(s) 338
BisI GCNGC 8 cut(s) 300, 378, 462, 465, 621, 896, 972, 981
BlsI GCNGC 8 cut(s) 301, 379, 463, 466, 622, 897, 973, 982
Bme1390I CCNGG 6 cut(s) 8, 167, 489, 676, 810, 845
Bme18I GGWCC 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 639
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 115, 993
BmrFI CCNGG 6 cut(s) 8, 167, 489, 676, 810, 845
BmsI GCATC 1 cut(s) 722
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 971
BpuMI CCSGG 2 cut(s) 676, 810
BsaJI CCNNGG 4 cut(s) 256, 487, 843, 844
BsaWI WCCGGW 2 cut(s) 586, 866
Bsc4I CCNNNNNNNGG 2 cut(s) 1094, 1226
Bse1I ACTGG 1 cut(s) 331
Bse3DI GCAATG 1 cut(s) 708
BseBI CCWGG 4 cut(s) 8, 167, 489, 845
BseDI CCNNGG 4 cut(s) 256, 487, 843, 844
BseGI GGATG 5 cut(s) 597, 645, 757, 875, 1299
BseLI CCNNNNNNNGG 2 cut(s) 1094, 1226
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 3 cut(s) 152, 371, 408
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 1 cut(s) 710
BseXI GCAGC 7 cut(s) 286, 364, 448, 476, 607, 983, 992
BseYI CCCAGC 1 cut(s) 882
Bsh1236I CGCG 1 cut(s) 382
Bsh1285I CGRYCG 1 cut(s) 675
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 991
BsiEI CGRYCG 1 cut(s) 675
BsiHKCI CYCGRG 1 cut(s) 639
BsiSI CCGG 4 cut(s) 587, 675, 810, 867
BslFI GGGAC 1 cut(s) 1111
BslI CCNNNNNNNGG 2 cut(s) 1094, 1226
BsmAI GTCTC 2 cut(s) 1037, 1262
BsmBI CGTCTC 1 cut(s) 1262
BsmFI GGGAC 1 cut(s) 1111
BsmI GAATGC 1 cut(s) 351
BsnI GGCC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 639
Bsp143I GATC 8 cut(s) 27, 243, 303, 412, 784, 876, 1117, 1191
BspACI CCGC 6 cut(s) 90, 382, 623, 662, 896, 1095
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 3 cut(s) 151, 370, 409
BspFNI CGCG 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 115, 993
BspMAI CTGCAG 1 cut(s) 466
BspPI GGATC 4 cut(s) 298, 407, 792, 1186
BspQI GCTCTTC 1 cut(s) 603
BspT107I GGYRCC 1 cut(s) 991
BspTI CTTAAG 1 cut(s) 1307
BsrBI CCGCTC 1 cut(s) 1095
BsrDI GCAATG 1 cut(s) 708
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 4 cut(s) 256, 487, 843, 844
BssMI GATC 8 cut(s) 27, 243, 303, 412, 784, 876, 1117, 1191
BssNAI GTATAC 1 cut(s) 760
BssSI CACGAG 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 256
Bst1107I GTATAC 1 cut(s) 760
Bst2BI CACGAG 1 cut(s) 339
Bst2UI CCWGG 4 cut(s) 8, 167, 489, 845
Bst4CI ACNGT 7 cut(s) 36, 130, 278, 433, 516, 829, 1081
Bst6I CTCTTC 6 cut(s) 60, 73, 170, 603, 810, 1260
BstAFI CTTAAG 1 cut(s) 1307
BstAPI GCANNNNNTGC 1 cut(s) 977
BstC8I GCNNGC 1 cut(s) 771
BstDEI CTNAG 3 cut(s) 138, 357, 417
BstF5I GGATG 5 cut(s) 597, 645, 757, 875, 1299
BstFNI CGCG 1 cut(s) 382
BstHHI GCGC 2 cut(s) 382, 895
BstKTI GATC 8 cut(s) 30, 246, 306, 415, 787, 879, 1120, 1194
BstMAI GTCTC 2 cut(s) 1037, 1262
BstMBI GATC 8 cut(s) 27, 243, 303, 412, 784, 876, 1117, 1191
BstMCI CGRYCG 1 cut(s) 675
BstMWI GCNNNNNNNGC 7 cut(s) 308, 377, 461, 968, 977, 980, 989
BstNI CCWGG 4 cut(s) 8, 167, 489, 845
BstSCI CCNGG 6 cut(s) 6, 165, 487, 674, 808, 843
BstSFI CTRYAG 3 cut(s) 372, 462, 795
BstUI CGCG 1 cut(s) 382
BstV1I GCAGC 7 cut(s) 286, 364, 448, 476, 607, 983, 992
BstXI CCANNNNNNTGG 2 cut(s) 604, 966
BstZ17I GTATAC 1 cut(s) 760
BsuI GTATCC 1 cut(s) 338
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 5 cut(s) 597, 645, 757, 875, 1299
BtsIMutI CAGTG 1 cut(s) 1086
Cac8I GCNNGC 1 cut(s) 771
CfoI GCGC 2 cut(s) 382, 895
Cfr13I GGNCC 1 cut(s) 278
CseI GACGC 1 cut(s) 1192
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 121, 236, 835
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 3 cut(s) 138, 357, 417
DpnI GATC 8 cut(s) 29, 245, 305, 414, 786, 878, 1119, 1193
DpnII GATC 8 cut(s) 27, 243, 303, 412, 784, 876, 1117, 1191
Eam1104I CTCTTC 6 cut(s) 60, 73, 170, 603, 810, 1260
EarI CTCTTC 6 cut(s) 60, 73, 170, 603, 810, 1260
EciI GGCGGA 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 639
EcoRI GAATTC 1 cut(s) 838
EcoRII CCWGG 4 cut(s) 6, 165, 487, 843
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 1262
FaeI CATG 3 cut(s) 124, 239, 838
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 1 cut(s) 1111
FatI CATG 3 cut(s) 120, 235, 834
FauI CCCGC 1 cut(s) 1088
FbaI TGATCA 2 cut(s) 27, 1117
FblI GTMKAC 2 cut(s) 149, 759
Fnu4HI GCNGC 8 cut(s) 300, 378, 462, 465, 621, 896, 972, 981
FokI GGATG 5 cut(s) 584, 632, 764, 882, 1306
Fsp4HI GCNGC 8 cut(s) 300, 378, 462, 465, 621, 896, 972, 981
FspBI CTAG 1 cut(s) 690
GlaI GCGC 2 cut(s) 381, 894
GluI GCNGC 8 cut(s) 300, 378, 462, 465, 621, 896, 972, 981
GsaI CCCAGC 1 cut(s) 886
HaeIII GGCC 1 cut(s) 255
HapII CCGG 4 cut(s) 587, 675, 810, 867
HgaI GACGC 1 cut(s) 1192
HhaI GCGC 2 cut(s) 382, 895
Hin1II CATG 3 cut(s) 124, 239, 838
Hin6I GCGC 2 cut(s) 380, 893
HinP1I GCGC 2 cut(s) 380, 893
HindIII AAGCTT 2 cut(s) 767, 1304
HinfI GANTC 8 cut(s) 136, 146, 524, 570, 637, 998, 1045, 1216
HpaII CCGG 4 cut(s) 587, 675, 810, 867
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 4 cut(s) 150, 584, 687, 760
Hpy188I TCNGA 8 cut(s) 80, 113, 141, 751, 906, 1073, 1215, 1322
Hpy188III TCNNGA 5 cut(s) 193, 281, 389, 416, 1220
Hpy8I GTNNAC 4 cut(s) 150, 584, 687, 760
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 1057, 1220
HpyCH4III ACNGT 7 cut(s) 36, 130, 278, 433, 516, 829, 1081
HpyCH4IV ACGT 2 cut(s) 580, 1271
HpyCH4V TGCA 7 cut(s) 447, 464, 512, 713, 723, 980, 1283
HpyF10VI GCNNNNNNNGC 7 cut(s) 308, 377, 461, 968, 977, 980, 989
HpyF3I CTNAG 3 cut(s) 138, 357, 417
HpySE526I ACGT 2 cut(s) 580, 1271
Hsp92II CATG 3 cut(s) 124, 239, 838
HspAI GCGC 2 cut(s) 380, 893
Ksp22I TGATCA 2 cut(s) 27, 1117
Kzo9I GATC 8 cut(s) 27, 243, 303, 412, 784, 876, 1117, 1191
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 4 cut(s) 92, 113, 239, 697
Lsp1109I GCAGC 7 cut(s) 286, 364, 448, 476, 607, 983, 992
LweI GCATC 1 cut(s) 722
MaeI CTAG 1 cut(s) 690
MaeII ACGT 2 cut(s) 580, 1271
MaeIII GTNAC 4 cut(s) 427, 433, 625, 829
MalI GATC 8 cut(s) 29, 245, 305, 414, 786, 878, 1119, 1193
MbiI CCGCTC 1 cut(s) 1095
MboI GATC 8 cut(s) 27, 243, 303, 412, 784, 876, 1117, 1191
MfeI CAATTG 1 cut(s) 1284
MluCI AATT 6 cut(s) 73, 247, 268, 838, 1234, 1284
MlyI GAGTC 5 cut(s) 130, 155, 631, 1007, 1039
MmeI TCCRAC 2 cut(s) 103, 1051
MnlI CCTC 6 cut(s) 61, 366, 688, 909, 947, 1284
MroXI GAANNNNTTC 2 cut(s) 501, 683
MseI TTAA 8 cut(s) 231, 291, 315, 479, 615, 863, 1053, 1308
MslI CAYNNNNRTG 2 cut(s) 212, 650
MspCI CTTAAG 1 cut(s) 1307
MspI CCGG 4 cut(s) 587, 675, 810, 867
MspR9I CCNGG 6 cut(s) 8, 167, 489, 676, 810, 845
MunI CAATTG 1 cut(s) 1284
Mva1269I GAATGC 1 cut(s) 351
MvaI CCWGG 4 cut(s) 8, 167, 489, 845
MvnI CGCG 1 cut(s) 382
MwoI GCNNNNNNNGC 7 cut(s) 308, 377, 461, 968, 977, 980, 989
NciI CCSGG 2 cut(s) 676, 810
NdeII GATC 8 cut(s) 27, 243, 303, 412, 784, 876, 1117, 1191
NlaIII CATG 3 cut(s) 124, 239, 838
NlaIV GGNNCC 2 cut(s) 115, 993
NmuCI GTSAC 1 cut(s) 829
PaeR7I CTCGAG 1 cut(s) 639
PasI CCCWGGG 1 cut(s) 844
PciSI GCTCTTC 1 cut(s) 603
PctI GAATGC 1 cut(s) 351
PdmI GAANNNNTTC 2 cut(s) 501, 683
PfeI GAWTC 3 cut(s) 524, 570, 1216
PkrI GCNGC 8 cut(s) 301, 379, 463, 466, 622, 897, 973, 982
PleI GAGTC 5 cut(s) 130, 154, 631, 1006, 1039
PpsI GAGTC 5 cut(s) 130, 154, 631, 1006, 1039
Psp6I CCWGG 4 cut(s) 6, 165, 487, 843
PspFI CCCAGC 1 cut(s) 882
PspGI CCWGG 4 cut(s) 6, 165, 487, 843
PspN4I GGNNCC 2 cut(s) 115, 993
PspPI GGNCC 1 cut(s) 278
PspXI VCTCGAGB 1 cut(s) 639
PstI CTGCAG 1 cut(s) 466
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 2 cut(s) 212, 650
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 8 cut(s) 231, 291, 315, 479, 615, 863, 1053, 1308
SatI GCNGC 8 cut(s) 300, 378, 462, 465, 621, 896, 972, 981
Sau3AI GATC 8 cut(s) 27, 243, 303, 412, 784, 876, 1117, 1191
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 5 cut(s) 130, 155, 631, 1007, 1039
ScrFI CCNGG 6 cut(s) 8, 167, 489, 676, 810, 845
SfaNI GCATC 1 cut(s) 722
SfcI CTRYAG 3 cut(s) 372, 462, 795
Sfr274I CTCGAG 1 cut(s) 639
SinI GGWCC 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 639
SmiMI CAYNNNNRTG 2 cut(s) 212, 650
SmlI CTYRAG 3 cut(s) 639, 986, 1307
SmoI CTYRAG 3 cut(s) 639, 986, 1307
Sse9I AATT 6 cut(s) 73, 247, 268, 838, 1234, 1284
SsiI CCGC 6 cut(s) 90, 382, 623, 662, 896, 1095
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 6 cut(s) 6, 165, 487, 674, 808, 843
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 7 cut(s) 36, 130, 278, 433, 516, 829, 1081
TaiI ACGT 2 cut(s) 583, 1274
TaqI TCGA 5 cut(s) 134, 273, 640, 919, 1091
TasI AATT 6 cut(s) 73, 247, 268, 838, 1234, 1284
TauI GCSGC 1 cut(s) 898
TfiI GAWTC 3 cut(s) 524, 570, 1216
Tru1I TTAA 8 cut(s) 231, 291, 315, 479, 615, 863, 1053, 1308
Tru9I TTAA 8 cut(s) 231, 291, 315, 479, 615, 863, 1053, 1308
TscAI CASTG 1 cut(s) 1086
TseFI GTSAC 1 cut(s) 829
TseI GCWGC 7 cut(s) 299, 377, 461, 464, 620, 971, 980
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 7 cut(s) 510, 546, 668, 768, 834, 851, 1310
TspRI CASTG 1 cut(s) 1086
Vha464I CTTAAG 1 cut(s) 1307
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 2 cut(s) 838, 1234
XcmI CCANNNNNNNNNTGG 2 cut(s) 338, 841
XhoI CTCGAG 1 cut(s) 639
XmiI GTMKAC 2 cut(s) 149, 759
XmnI GAANNNNTTC 2 cut(s) 501, 683
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.