RLG00000011805

Kynurenine--oxoglutarate transaminase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012279
Physical Location & Seq
Reverse (-)
12812525 .. 12815628
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011805

Sequence Viewer

Length: 1368 bp
ATGCGGATTCAATGTACTTGGCCGTCCCATGAAATGCGCTTGTGTTCTTCAACCCTCTTCACCTTTTCCAAAAATTCGCACAAAGACTTGAGCTTTATTAGGACGAGAACGACCACGGTCTGCCCTCCTTGCCCTTCTGTCTCAGCCACAATGTCCACCGTTTCGACAGAAAAGGATGCCCTTTCGGGTCAAACAGAATCGACCCAGAAGCCATTACAGGTGGCAAAGCGGTTGGAAAAATTCAAGACGACAATCTTCACGCAAATGAGTAATCTTGCTGTTAAACATGGAGCAATAAACCTTGGGCAAGGGTTTCCCAACTTTGATGGTCCAGAGTTTGTAAAGGAAGCTGCAATTCAGGCCGTGGTAGATGGGAAAAATCAATATGCTCGTGGATATGGGGTTCCAGACCTAAACAATGCCATTGCTGAGAGATTCAAGAAAGACACGGGACTGGTTGTGGACCCTGAGAAAGAAATAACTGTTACCTCTGGCTGCACAGAGGCAATTGCAGCAACCATGTTGGGCTTGATAAATCCTGGTGATGAGGTTATCCTCTTTGCTCCTTTTTATGATTCTTACGAAGCGACTCTTTCCATGGCTGGTGCTAAAGTAAAAGGTATCACACTACGCCCTCCAGATTTTGCTGTCCCCATTGATGAACTGAAGTCTGCAATCTCAAAGAATACTCGTGCAATTCTTATAAATACTCCGCATAATCCTACTGGAAAGATGTTCACTCGAGAGGAACTTGACGCTATTGCATCTCTCTGCATCGAAAATGATGTACTGGTGTTCACTGATGAAGTTTATGATAAGTTGGCTTTTGAAATGGATCACATTTCTATGGCTTCTCTTCCTGGAATGTACGAGCGTACAGTAACCATGAATTCCTTGGGGAAAACATTTTCGTTAACTGGGTGGAAGATCGGTTGGGCTATAGCTCCTCCCCACCTGTCATGGGGAGTGCGGCAGGCACACTCTTATCTCACTTTTGCTACCTCCACTCCTATGCAATGGGCTGCTGCAACAGCTCTCAGAGCCCCAGACTCCTACTTTCTGGAGCTGAAAAGAGATTACTTGGCAAAGAAGGAAATTTTGGTAGAGGGATTGAACGCTGTCGGTTTTAAAGTGTATCCATCCAGTGGGACCTACTTTGTGGTTGTAGATCACACTTCTTTTGGGTTGCCAAATGATGTTGCGTTTTGTGAGTATCTGATCAAGGAAGTCGGAGTGGTGGCAATCCCTACCAGTGTGTTTTATTTAAACCCAGAAGATGGAAAGAATCTAGTCAGATTTACTTTCTGCAAGGATGAGGGAACTCTTAGGGCTGCGGTTGAGAGGTTGAAGGAGAAGTTGAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005488 GO:0008144 GO:0008483 GO:0010326 GO:0016740 GO:0016769 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050662 GO:0070279 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

456

Amino Acids

50.2

Weight (kDa)

6.48

Isoelectric Point (pI)

28.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 99 - 449 3.9e-68 Aminotransferase class I and II
Cys_Met_Meta_PP PF01053 152 - 270 2.5e-08 Cys/Met metabolism PLP-dependent enzyme
Aminotran_5 PF00266 154 - 270 1.6e-07 Aminotransferase class-V
DegT_DnrJ_EryC1 PF01041 154 - 268 7.9e-07 DegT/DnrJ/EryC1/StrS aminotransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012279)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77670
fragaria_vesca FvH4_2g26550 FvH4_2g26550 FvH4_2g26550
malus_domestica MD08G1166900.v1.1 MD15G1353000.v1.1
prunus_persica Prupe.1G501400_v2.0.a1
pyrus_communis pycom08g14300 pycom15g31620
rosa_chinensis RchiOBHm_Chr6g0295421
rosa_laevigata RLG00000011805
rosa_multiflora Rmu_sc0003058.1_g000002
rosa_roxburghii Rroxscaffold_7G00172510
rosa_rugosa Rorug06G0250500
rosa_samantha Rh6AG363900 Rh6BG372100 Rh6CG378500 Rh6DG364900
rosa_wichuraiana Rw6G031770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 704
AccB7I CCANNNNNTGG 2 cut(s) 1145, 1277
AciI CCGC 5 cut(s) 4, 229, 713, 970, 1334
AclWI GGATC 1 cut(s) 843
AcoI YGGCCR 1 cut(s) 20
AcsI RAATTY 4 cut(s) 73, 239, 889, 1095
AcuI CTGAAG 1 cut(s) 686
AfaI GTAC 4 cut(s) 16, 789, 869, 877
AfiI CCNNNNNNNGG 3 cut(s) 961, 1145, 1277
AgsI TTSAA 8 cut(s) 11, 51, 244, 439, 830, 1114, 1348, 1360
AjnI CCWGG 2 cut(s) 538, 859
AjuI GAANNNNNNNTTGG 2 cut(s) 1082, 1114
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 5 cut(s) 93, 350, 944, 1034, 1066
AluI AGCT 5 cut(s) 93, 350, 944, 1034, 1066
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 843
Ama87I CYCGRG 1 cut(s) 741
AoxI GGCC 2 cut(s) 20, 360
ApeKI GCWGC 6 cut(s) 350, 495, 512, 1022, 1025, 1331
ApoI RAATTY 4 cut(s) 73, 239, 889, 1095
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 3 cut(s) 329, 463, 1149
AsuHPI GGTGA 2 cut(s) 52, 554
AvaI CYCGRG 1 cut(s) 741
AvaII GGWCC 3 cut(s) 329, 463, 1149
BanII GRGCYC 1 cut(s) 1045
BauI CACGAG 2 cut(s) 390, 690
BbvI GCAGC 6 cut(s) 337, 482, 524, 1009, 1012, 1318
BccI CCATC 4 cut(s) 320, 365, 1147, 1271
BceAI ACGGC 2 cut(s) 7, 347
BciT130I CCWGG 2 cut(s) 540, 861
BciVI GTATCC 1 cut(s) 1146
BclI TGATCA 1 cut(s) 1218
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 2 cut(s) 1289, 1366
BfmI CTRYAG 1 cut(s) 939
BfuI GTATCC 1 cut(s) 1146
BisI GCNGC 7 cut(s) 351, 496, 513, 971, 1023, 1026, 1332
BlsI GCNGC 7 cut(s) 352, 497, 514, 972, 1024, 1027, 1333
Bme1390I CCNGG 2 cut(s) 540, 861
Bme18I GGWCC 3 cut(s) 329, 463, 1149
BmeT110I CYCGRG 1 cut(s) 741
BmgT120I GGNCC 3 cut(s) 329, 463, 1149
BmiI GGNNCC 3 cut(s) 405, 465, 1150
BmrFI CCNGG 2 cut(s) 540, 861
BmrI ACTGGG 1 cut(s) 927
BmsI GCATC 3 cut(s) 166, 773, 783
BmuI ACTGGG 1 cut(s) 927
BoxI GACNNNNGTC 1 cut(s) 116
BpmI CTGGAG 2 cut(s) 621, 1082
BpuEI CTTGAG 1 cut(s) 109
BsaJI CCNNGG 5 cut(s) 114, 301, 363, 597, 894
BsaXI ACNNNNNCTCC 2 cut(s) 991, 1021
Bsc4I CCNNNNNNNGG 3 cut(s) 961, 1145, 1277
Bse1I ACTGG 6 cut(s) 459, 730, 795, 922, 1143, 1251
Bse3DI GCAATG 2 cut(s) 423, 1022
BseBI CCWGG 2 cut(s) 540, 861
BseDI CCNNGG 5 cut(s) 114, 301, 363, 597, 894
BseGI GGATG 3 cut(s) 181, 1139, 1318
BseLI CCNNNNNNNGG 3 cut(s) 961, 1145, 1277
BseMI GCAATG 2 cut(s) 423, 1022
BseMII CTCAG 4 cut(s) 156, 420, 459, 1051
BseNI ACTGG 6 cut(s) 459, 730, 795, 922, 1143, 1251
BseRI GAGGAG 1 cut(s) 936
BseXI GCAGC 6 cut(s) 337, 482, 524, 1009, 1012, 1318
BsgI GTGCAG 1 cut(s) 481
BshFI GGCC 2 cut(s) 22, 362
BsiHKCI CYCGRG 1 cut(s) 741
BslFI GGGAC 4 cut(s) 10, 465, 635, 1162
BslI CCNNNNNNNGG 3 cut(s) 961, 1145, 1277
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 4 cut(s) 10, 465, 635, 1162
BsnI GGCC 2 cut(s) 22, 362
BsoBI CYCGRG 1 cut(s) 741
Bsp1286I GDGCHC 1 cut(s) 1045
Bsp143I GATC 4 cut(s) 835, 927, 1168, 1218
Bsp19I CCATGG 1 cut(s) 597
BspACI CCGC 5 cut(s) 4, 229, 713, 970, 1334
BspANI GGCC 2 cut(s) 22, 362
BspCNI CTCAG 4 cut(s) 155, 421, 460, 1050
BspLI GGNNCC 3 cut(s) 405, 465, 1150
BspPI GGATC 1 cut(s) 843
BsrDI GCAATG 2 cut(s) 423, 1022
BsrI ACTGG 6 cut(s) 459, 730, 795, 922, 1143, 1251
BssECI CCNNGG 5 cut(s) 114, 301, 363, 597, 894
BssMI GATC 4 cut(s) 835, 927, 1168, 1218
BssSI CACGAG 2 cut(s) 390, 690
BssT1I CCWWGG 3 cut(s) 301, 597, 894
Bst2BI CACGAG 2 cut(s) 390, 690
Bst2UI CCWGG 2 cut(s) 540, 861
Bst4CI ACNGT 4 cut(s) 118, 160, 484, 880
Bst6I CTCTTC 2 cut(s) 62, 861
BstC8I GCNNGC 1 cut(s) 975
BstDEI CTNAG 5 cut(s) 142, 429, 468, 1037, 1325
BstDSI CCRYGG 3 cut(s) 114, 363, 597
BstF5I GGATG 3 cut(s) 181, 1139, 1318
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 4 cut(s) 838, 930, 1171, 1221
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 4 cut(s) 835, 927, 1168, 1218
BstMWI GCNNNNNNNGC 5 cut(s) 129, 359, 512, 1031, 1040
BstNI CCWGG 2 cut(s) 540, 861
BstPAI GACNNNNGTC 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 538, 859
BstSFI CTRYAG 1 cut(s) 939
BstV1I GCAGC 6 cut(s) 337, 482, 524, 1009, 1012, 1318
BsuI GTATCC 1 cut(s) 1146
BsuRI GGCC 2 cut(s) 22, 362
BtgI CCRYGG 3 cut(s) 114, 363, 597
BtsCI GGATG 3 cut(s) 181, 1139, 1318
BtsIMutI CAGTG 3 cut(s) 798, 1150, 1258
Cac8I GCNNGC 1 cut(s) 975
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 3 cut(s) 329, 463, 1149
CseI GACGC 1 cut(s) 764
Csp6I GTAC 4 cut(s) 15, 788, 868, 876
CviAII CATG 6 cut(s) 29, 287, 520, 598, 886, 960
CviQI GTAC 4 cut(s) 15, 788, 868, 876
DdeI CTNAG 5 cut(s) 142, 429, 468, 1037, 1325
DpnI GATC 4 cut(s) 837, 929, 1170, 1220
DpnII GATC 4 cut(s) 835, 927, 1168, 1218
DraI TTTAAA 2 cut(s) 1129, 1266
EaeI YGGCCR 1 cut(s) 20
Eam1104I CTCTTC 2 cut(s) 62, 861
EarI CTCTTC 2 cut(s) 62, 861
Eco130I CCWWGG 3 cut(s) 301, 597, 894
Eco24I GRGCYC 1 cut(s) 1045
Eco47I GGWCC 3 cut(s) 329, 463, 1149
Eco57I CTGAAG 1 cut(s) 686
Eco88I CYCGRG 1 cut(s) 741
EcoO109I RGGNCCY 1 cut(s) 1149
EcoRI GAATTC 1 cut(s) 889
EcoRII CCWGG 2 cut(s) 538, 859
EcoT14I CCWWGG 3 cut(s) 301, 597, 894
EcoT38I GRGCYC 1 cut(s) 1045
ErhI CCWWGG 3 cut(s) 301, 597, 894
FaeI CATG 6 cut(s) 32, 290, 523, 601, 889, 963
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FaqI GGGAC 4 cut(s) 10, 465, 635, 1162
FatI CATG 6 cut(s) 28, 286, 519, 597, 885, 959
FbaI TGATCA 1 cut(s) 1218
Fnu4HI GCNGC 7 cut(s) 351, 496, 513, 971, 1023, 1026, 1332
FokI GGATG 3 cut(s) 188, 1126, 1325
FriOI GRGCYC 1 cut(s) 1045
Fsp4HI GCNGC 7 cut(s) 351, 496, 513, 971, 1023, 1026, 1332
FspBI CTAG 2 cut(s) 1289, 1366
GlaI GCGC 1 cut(s) 38
GluI GCNGC 7 cut(s) 351, 496, 513, 971, 1023, 1026, 1332
GsuI CTGGAG 2 cut(s) 621, 1082
HaeIII GGCC 2 cut(s) 22, 362
HgaI GACGC 1 cut(s) 764
HhaI GCGC 1 cut(s) 39
Hin1II CATG 6 cut(s) 32, 290, 523, 601, 889, 963
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 1 cut(s) 915
HindII GTYRAC 1 cut(s) 915
HinfI GANTC 7 cut(s) 7, 197, 435, 575, 589, 1049, 1285
HpaI GTTAAC 1 cut(s) 915
HphI GGTGA 2 cut(s) 52, 554
Hpy166II GTNNAC 5 cut(s) 156, 463, 738, 798, 915
Hpy188I TCNGA 4 cut(s) 1040, 1218, 1232, 1295
Hpy188III TCNNGA 7 cut(s) 244, 332, 407, 439, 638, 743, 1061
Hpy8I GTNNAC 5 cut(s) 156, 463, 738, 798, 915
HpyAV CCTTC 3 cut(s) 144, 1084, 1342
HpyCH4III ACNGT 4 cut(s) 118, 160, 484, 880
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 359, 512, 1031, 1040
HpyF3I CTNAG 5 cut(s) 142, 429, 468, 1037, 1325
Hsp92II CATG 6 cut(s) 32, 290, 523, 601, 889, 963
HspAI GCGC 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 1218
KspAI GTTAAC 1 cut(s) 915
Kzo9I GATC 4 cut(s) 835, 927, 1168, 1218
LmnI GCTCC 4 cut(s) 290, 568, 949, 1063
Lsp1109I GCAGC 6 cut(s) 337, 482, 524, 1009, 1012, 1318
LweI GCATC 3 cut(s) 166, 773, 783
MaeI CTAG 2 cut(s) 1289, 1366
MaeIII GTNAC 2 cut(s) 484, 880
MalI GATC 4 cut(s) 837, 929, 1170, 1220
MboI GATC 4 cut(s) 835, 927, 1168, 1218
MboII GAAGA 6 cut(s) 39, 49, 247, 848, 937, 1286
MfeI CAATTG 1 cut(s) 507
MhlI GDGCHC 1 cut(s) 1045
MluCI AATT 7 cut(s) 73, 239, 354, 507, 696, 889, 1095
MlyI GAGTC 2 cut(s) 583, 1043
MmeI TCCRAC 2 cut(s) 213, 1210
MseI TTAA 4 cut(s) 282, 914, 1128, 1265
MslI CAYNNNNRTG 3 cut(s) 263, 845, 1010
MspR9I CCNGG 2 cut(s) 540, 861
MunI CAATTG 1 cut(s) 507
MvaI CCWGG 2 cut(s) 540, 861
MwoI GCNNNNNNNGC 5 cut(s) 129, 359, 512, 1031, 1040
NcoI CCATGG 1 cut(s) 597
NdeII GATC 4 cut(s) 835, 927, 1168, 1218
NlaIII CATG 6 cut(s) 32, 290, 523, 601, 889, 963
NlaIV GGNNCC 3 cut(s) 405, 465, 1150
PaeR7I CTCGAG 1 cut(s) 741
PfeI GAWTC 5 cut(s) 7, 197, 435, 575, 1285
PflMI CCANNNNNTGG 2 cut(s) 1145, 1277
PfoI TCCNGGA 1 cut(s) 859
PkrI GCNGC 7 cut(s) 352, 497, 514, 972, 1024, 1027, 1333
PleI GAGTC 2 cut(s) 583, 1043
PpsI GAGTC 2 cut(s) 583, 1043
PpuMI RGGWCCY 1 cut(s) 1149
PshAI GACNNNNGTC 1 cut(s) 116
PsiI TTATAA 1 cut(s) 704
Psp5II RGGWCCY 1 cut(s) 1149
Psp6I CCWGG 2 cut(s) 538, 859
PspGI CCWGG 2 cut(s) 538, 859
PspN4I GGNNCC 3 cut(s) 405, 465, 1150
PspPI GGNCC 3 cut(s) 329, 463, 1149
PspPPI RGGWCCY 1 cut(s) 1149
RsaI GTAC 4 cut(s) 16, 789, 869, 877
RsaNI GTAC 4 cut(s) 15, 788, 868, 876
RseI CAYNNNNRTG 3 cut(s) 263, 845, 1010
SaqAI TTAA 4 cut(s) 282, 914, 1128, 1265
SatI GCNGC 7 cut(s) 351, 496, 513, 971, 1023, 1026, 1332
Sau3AI GATC 4 cut(s) 835, 927, 1168, 1218
Sau96I GGNCC 3 cut(s) 329, 463, 1149
SchI GAGTC 2 cut(s) 583, 1043
ScrFI CCNGG 2 cut(s) 540, 861
SduI GDGCHC 1 cut(s) 1045
SfaNI GCATC 3 cut(s) 166, 773, 783
SfcI CTRYAG 1 cut(s) 939
Sfr274I CTCGAG 1 cut(s) 741
SinI GGWCC 3 cut(s) 329, 463, 1149
SlaI CTCGAG 1 cut(s) 741
SmiMI CAYNNNNRTG 3 cut(s) 263, 845, 1010
SmlI CTYRAG 2 cut(s) 88, 741
SmoI CTYRAG 2 cut(s) 88, 741
Sse9I AATT 7 cut(s) 73, 239, 354, 507, 696, 889, 1095
SsiI CCGC 5 cut(s) 4, 229, 713, 970, 1334
SspMI CTAG 2 cut(s) 1289, 1366
StyD4I CCNGG 2 cut(s) 538, 859
StyI CCWWGG 3 cut(s) 301, 597, 894
TaaI ACNGT 4 cut(s) 118, 160, 484, 880
TaqI TCGA 4 cut(s) 164, 200, 742, 777
TasI AATT 7 cut(s) 73, 239, 354, 507, 696, 889, 1095
TatI WGTACW 2 cut(s) 14, 787
TauI GCSGC 1 cut(s) 973
TfiI GAWTC 5 cut(s) 7, 197, 435, 575, 1285
Tru1I TTAA 4 cut(s) 282, 914, 1128, 1265
Tru9I TTAA 4 cut(s) 282, 914, 1128, 1265
TscAI CASTG 3 cut(s) 805, 1150, 1258
TseI GCWGC 6 cut(s) 350, 495, 512, 1022, 1025, 1331
TspDTI ATGAA 4 cut(s) 45, 675, 819, 902
TspRI CASTG 3 cut(s) 805, 1150, 1258
Van91I CCANNNNNTGG 2 cut(s) 1145, 1277
VpaK11BI GGWCC 3 cut(s) 329, 463, 1149
XapI RAATTY 4 cut(s) 73, 239, 889, 1095
XcmI CCANNNNNNNNNTGG 1 cut(s) 892
XhoI CTCGAG 1 cut(s) 741
XspI CTAG 2 cut(s) 1289, 1366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.