AT1G77750

Belongs to the universal ribosomal protein uS13 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015954
Physical Location & Seq
Reverse (-)
29229990 .. 29231727
1738 bp
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UTR
Exon/CDS
Intron
AT1G77750.1

Sequence Viewer

Length: 465 bp
ATGTTGGGTTTACGAAGATCTGCGACGACCTTGTTCGACATCAGCCAGTCTCTGCTTCGTAATGTTACGTTTCATGGGTTACGAGTCCAAGGAATTCGTGTGGGAAACGCAGAGGTTCCAAACAATAAGCCACTCAAAACCGGTCTTCAAGAAGTTTATGGAATCGGCCGCCGTAAATCTCACCAGGTTCTCTGTCACCTTGGAATCACTAACAAACTTGCCAGAGACTTAACTGGAAAAGAACTCATTGATCTCCGTGAAGAAGTTGGCCAGCACCAGCATGGTGATGAACTGAGGAGGCGTGTTGGATCGGAAATACAGAGACTGGTCGAAGTAGATTGCTACAGAGGTAGTAGACATAGACATGGATTGCCTTGCAGAGGACAAAGAACCAGTACTAACGCTCGCACCAAAAAGGGCAAAGCCGTTGCGATTGCAGGAAAGAAGAAAGCCCCTCGCAAGTAA

Protein Analysis

154

Amino Acids

17.27

Weight (kDa)

11.07

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S13 PF00416 33 - 137 1.2e-21 Ribosomal protein S13/S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015954)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77750
fragaria_vesca FvH4_2g26171
malus_domestica MD10G1050000.v1.1
prunus_persica Prupe.1G504900_v2.0.a1
pyrus_communis pycom10g03520
rosa_chinensis RchiOBHm_Chr6g0294601
rosa_laevigata RLG00000011855
rosa_multiflora Rmu_sc0006264.1_g000011 Rmu_sc0007845.1_g000001
rosa_roxburghii Rroxscaffold_7G00173170
rosa_samantha Rh6AG358600 Rh6BG365800 Rh6CG372400 Rh6DG359200
rosa_wichuraiana Rw6G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 355
AciI CCGC 1 cut(s) 169
AclWI GGATC 1 cut(s) 316
AcoI YGGCCR 2 cut(s) 166, 268
AcsI RAATTY 1 cut(s) 93
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 1 cut(s) 380
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 1 cut(s) 149
AjnI CCWGG 1 cut(s) 183
Alw26I GTCTC 3 cut(s) 54, 219, 316
AlwI GGATC 1 cut(s) 316
AlwNI CAGNNNCTG 2 cut(s) 52, 325
AoxI GGCC 2 cut(s) 166, 268
ApoI RAATTY 1 cut(s) 93
AsiGI ACCGGT 1 cut(s) 140
AsuHPI GGTGA 3 cut(s) 173, 188, 296
BalI TGGCCA 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 137
BceAI ACGGC 2 cut(s) 156, 410
BciT130I CCWGG 1 cut(s) 185
BcoDI GTCTC 3 cut(s) 54, 219, 316
BfmI CTRYAG 1 cut(s) 343
BglII AGATCT 1 cut(s) 17
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 88, 199
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 4 cut(s) 46, 238, 330, 393
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 88, 199
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 4 cut(s) 46, 238, 330, 393
BseRI GAGGAG 1 cut(s) 310
BseX3I CGGCCG 1 cut(s) 166
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 168, 270
BshTI ACCGGT 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 169
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 3 cut(s) 54, 219, 316
BsnI GGCC 2 cut(s) 168, 270
Bsp143I GATC 3 cut(s) 17, 250, 308
BspACI CCGC 1 cut(s) 169
BspANI GGCC 2 cut(s) 168, 270
BspCNI CTCAG 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 4 cut(s) 46, 238, 330, 393
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 88, 199
BssMI GATC 3 cut(s) 17, 250, 308
BssT1I CCWWGG 2 cut(s) 88, 199
Bst2UI CCWGG 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 272, 406
BstDEI CTNAG 1 cut(s) 293
BstENI CCTNNNNNAGG 1 cut(s) 378
BstKTI GATC 3 cut(s) 20, 253, 311
BstMAI GTCTC 3 cut(s) 54, 219, 316
BstMBI GATC 3 cut(s) 17, 250, 308
BstMCI CGRYCG 1 cut(s) 169
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 343
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BstZI CGGCCG 1 cut(s) 166
BsuRI GGCC 2 cut(s) 168, 270
Cac8I GCNNGC 2 cut(s) 272, 406
CaiI CAGNNNCTG 2 cut(s) 52, 325
Cfr10I RCCGGY 1 cut(s) 140
CsiI ACCWGGT 1 cut(s) 183
Csp6I GTAC 1 cut(s) 396
CspAI ACCGGT 1 cut(s) 140
CviAII CATG 3 cut(s) 74, 281, 365
CviJI RGCY 6 cut(s) 45, 130, 168, 270, 425, 452
CviKI_1 RGCY 6 cut(s) 45, 130, 168, 270, 425, 452
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 1 cut(s) 293
DpnI GATC 3 cut(s) 19, 252, 310
DpnII GATC 3 cut(s) 17, 250, 308
EaeI YGGCCR 2 cut(s) 166, 268
EagI CGGCCG 1 cut(s) 166
EclXI CGGCCG 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 88, 199
Eco52I CGGCCG 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 378
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 2 cut(s) 88, 199
ErhI CCWWGG 2 cut(s) 88, 199
FaeI CATG 3 cut(s) 77, 284, 368
FaiI YATR 5 cut(s) 75, 159, 282, 360, 366
FatI CATG 3 cut(s) 73, 280, 364
FblI GTMKAC 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 169
HaeIII GGCC 2 cut(s) 168, 270
HapII CCGG 1 cut(s) 141
Hin1II CATG 3 cut(s) 77, 284, 368
HinfI GANTC 3 cut(s) 84, 162, 204
HpaII CCGG 1 cut(s) 141
HphI GGTGA 3 cut(s) 173, 188, 296
Hpy166II GTNNAC 2 cut(s) 11, 356
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 2 cut(s) 11, 356
Hpy99I CGWCG 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 378, 437
HpyF3I CTNAG 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 3 cut(s) 77, 284, 368
Kzo9I GATC 3 cut(s) 17, 250, 308
MabI ACCWGGT 1 cut(s) 183
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 3 cut(s) 64, 78, 194
MalI GATC 3 cut(s) 19, 252, 310
MboI GATC 3 cut(s) 17, 250, 308
MboII GAAGA 4 cut(s) 27, 137, 272, 457
MflI RGATCY 1 cut(s) 17
MlsI TGGCCA 1 cut(s) 270
MluCI AATT 1 cut(s) 93
MluNI TGGCCA 1 cut(s) 270
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 6 cut(s) 106, 288, 291, 341, 374, 465
Mox20I TGGCCA 1 cut(s) 270
MscI TGGCCA 1 cut(s) 270
MseI TTAA 1 cut(s) 230
MslI CAYNNNNRTG 3 cut(s) 279, 285, 363
Msp20I TGGCCA 1 cut(s) 270
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
NdeII GATC 3 cut(s) 17, 250, 308
NlaIII CATG 3 cut(s) 77, 284, 368
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 194
PfeI GAWTC 2 cut(s) 162, 204
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 117
PstNI CAGNNNCTG 2 cut(s) 52, 325
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
RseI CAYNNNNRTG 3 cut(s) 279, 285, 363
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 3 cut(s) 17, 250, 308
ScaI AGTACT 1 cut(s) 397
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 185
SetI ASST 6 cut(s) 32, 71, 117, 189, 201, 352
SexAI ACCWGGT 1 cut(s) 183
SfcI CTRYAG 1 cut(s) 343
SmiMI CAYNNNNRTG 3 cut(s) 279, 285, 363
Sse9I AATT 1 cut(s) 93
SsiI CCGC 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 2 cut(s) 88, 199
TaiI ACGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 36, 330
TasI AATT 1 cut(s) 93
TatI WGTACW 1 cut(s) 395
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 162, 204
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 2 cut(s) 62, 303
TspGWI ACGGA 1 cut(s) 245
XagI CCTNNNNNAGG 1 cut(s) 378
XapI RAATTY 1 cut(s) 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 355
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.