Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007845.1

Orthogroup ID

OG0015954

Physical Location & Seq

Genomic Coordinates Reverse (-)

968 .. 4109

Gene Structure 3142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007845.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgtttgggttacgcgcagtcgcttcaaatgttgggggtcgactccttcaatctttactgtttcgtgggacacgcacccaatgcatcagtataaaagcaggaatggatatcccagacaacaagtcccttgagtacgcccttccatacatacatggcataggtagagccagggctcgccacatcctatctgagctccacatggacaacaaacttgccagggacttgactaaaagagaaattgttgctcttggtgatgaactctccaagtacataattggaagggaactgtttcgtgggacacgcacccaatgcatcagtataaaagcaggaatggatatcccagacaacaagtcccttgagtacgcccttccatacatacatggcataggtagagccagggctcgccacatcctatctgagctccacatggacaacaaacttgccagggacttgactaaaagagaaattgttgctattggtgatgaactctccaagtacataattggaagggaactggcagcagttgttgagaaagatgttagacgaatgatagacatccagtcctacagagggataagacataatgatgggttgccatgccgaggacagcgcaccaagacgaatgccaggaccaggaaagctggtaagcggattccttctggagtaaggaacaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

225

Amino Acids

25.38

Weight (kDa)

10.3

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77750
fragaria_vesca	FvH4_2g26171
malus_domestica	MD10G1050000.v1.1
prunus_persica	Prupe.1G504900_v2.0.a1
pyrus_communis	pycom10g03520
rosa_chinensis	RchiOBHm_Chr6g0294601
rosa_laevigata	RLG00000011855
rosa_multiflora	Rmu_sc0006264.1_g000011 Rmu_sc0007845.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173170
rosa_samantha	Rh6AG358600 Rh6BG365800 Rh6CG372400 Rh6DG359200
rosa_wichuraiana	Rw6G031290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	40
AccII	CGCG	1 cut(s)	15
AciI	CCGC	1 cut(s)	649
AfaI	GTAC	4 cut(s)	134, 269, 362, 497
AfiI	CCNNNNNNNGG	3 cut(s)	570, 602, 633
AgsI	TTSAA	2 cut(s)	27, 50
AhdI	GACNNNNNGTC	3 cut(s)	121, 349, 559
AjnI	CCWGG	6 cut(s)	167, 215, 395, 443, 626, 632
AluBI	AGCT	3 cut(s)	193, 421, 641
AluI	AGCT	3 cut(s)	193, 421, 641
Alw21I	GWGCWC	2 cut(s)	195, 423
ApeKI	GCWGC	1 cut(s)	518
Asp700I	GAANNNNTTC	1 cut(s)	288
AspLEI	GCGC	2 cut(s)	17, 612
AspS9I	GGNCC	1 cut(s)	630
AsuHPI	GGTGA	2 cut(s)	263, 491
AvaII	GGWCC	1 cut(s)	630
BanII	GRGCYC	4 cut(s)	175, 195, 403, 423
Bbv12I	GWGCWC	2 cut(s)	195, 423
BbvI	GCAGC	1 cut(s)	530
BccI	CCATC	1 cut(s)	581
BciT130I	CCWGG	6 cut(s)	169, 217, 397, 445, 628, 634
BfmI	CTRYAG	1 cut(s)	565
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	6 cut(s)	169, 217, 397, 445, 628, 634
Bme18I	GGWCC	1 cut(s)	630
BmeRI	GACNNNNNGTC	3 cut(s)	121, 349, 559
BmgT120I	GGNCC	1 cut(s)	630
BmrFI	CCNGG	6 cut(s)	169, 217, 397, 445, 628, 634
BmsI	GCATC	2 cut(s)	93, 321
BpuEI	CTTGAG	2 cut(s)	149, 377
BsaBI	GATNNNNATC	1 cut(s)	554
BsaJI	CCNNGG	5 cut(s)	168, 216, 396, 444, 601
Bsc4I	CCNNNNNNNGG	3 cut(s)	570, 602, 633
Bse1I	ACTGG	2 cut(s)	519, 559
Bse8I	GATNNNNATC	1 cut(s)	554
BseBI	CCWGG	6 cut(s)	169, 217, 397, 445, 628, 634
BseDI	CCNNGG	5 cut(s)	168, 216, 396, 444, 601
BseGI	GGATG	3 cut(s)	180, 408, 555
BseJI	GATNNNNATC	1 cut(s)	554
BseLI	CCNNNNNNNGG	3 cut(s)	570, 602, 633
BseMII	CTCAG	2 cut(s)	180, 408
BseNI	ACTGG	2 cut(s)	519, 559
BseXI	GCAGC	1 cut(s)	530
Bsh1236I	CGCG	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	195, 423
BslFI	GGGAC	6 cut(s)	82, 109, 233, 310, 337, 461
BslI	CCNNNNNNNGG	3 cut(s)	570, 602, 633
BsmFI	GGGAC	6 cut(s)	82, 109, 233, 310, 337, 461
BsmI	GAATGC	1 cut(s)	628
Bsp1286I	GDGCHC	4 cut(s)	175, 195, 403, 423
BspACI	CCGC	1 cut(s)	649
BspCNI	CTCAG	2 cut(s)	181, 409
BspFNI	CGCG	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	519, 559
BssECI	CCNNGG	5 cut(s)	168, 216, 396, 444, 601
Bst2UI	CCWGG	6 cut(s)	169, 217, 397, 445, 628, 634
Bst4CI	ACNGT	2 cut(s)	60, 288
BstAPI	GCANNNNNTGC	2 cut(s)	81, 309
BstC8I	GCNNGC	2 cut(s)	175, 403
BstDEI	CTNAG	2 cut(s)	189, 417
BstF5I	GGATG	3 cut(s)	180, 408, 555
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	17, 612
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 309
BstNI	CCWGG	6 cut(s)	169, 217, 397, 445, 628, 634
BstSCI	CCNGG	6 cut(s)	167, 215, 395, 443, 626, 632
BstSFI	CTRYAG	1 cut(s)	565
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	530
BtsCI	GGATG	3 cut(s)	180, 408, 555
Cac8I	GCNNGC	2 cut(s)	175, 403
CfoI	GCGC	2 cut(s)	17, 612
Cfr13I	GGNCC	1 cut(s)	630
Csp6I	GTAC	4 cut(s)	133, 268, 361, 496
CviAII	CATG	5 cut(s)	152, 199, 380, 427, 597
CviJI	RGCY	7 cut(s)	167, 173, 193, 395, 401, 421, 641
CviKI_1	RGCY	7 cut(s)	167, 173, 193, 395, 401, 421, 641
CviQI	GTAC	4 cut(s)	133, 268, 361, 496
DdeI	CTNAG	2 cut(s)	189, 417
DriI	GACNNNNNGTC	3 cut(s)	121, 349, 559
Eam1105I	GACNNNNNGTC	3 cut(s)	121, 349, 559
Ecl136II	GAGCTC	2 cut(s)	193, 421
Eco24I	GRGCYC	4 cut(s)	175, 195, 403, 423
Eco32I	GATATC	2 cut(s)	109, 337
Eco47I	GGWCC	1 cut(s)	630
Eco53kI	GAGCTC	2 cut(s)	193, 421
EcoICRI	GAGCTC	2 cut(s)	193, 421
EcoRII	CCWGG	6 cut(s)	167, 215, 395, 443, 626, 632
EcoRV	GATATC	2 cut(s)	109, 337
EcoT22I	ATGCAT	2 cut(s)	86, 314
EcoT38I	GRGCYC	4 cut(s)	175, 195, 403, 423
FaeI	CATG	5 cut(s)	155, 202, 383, 430, 600
FaqI	GGGAC	6 cut(s)	82, 109, 233, 310, 337, 461
FatI	CATG	5 cut(s)	151, 198, 379, 426, 596
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	3 cut(s)	167, 395, 542
FriOI	GRGCYC	4 cut(s)	175, 195, 403, 423
Fsp4HI	GCNGC	1 cut(s)	519
GlaI	GCGC	2 cut(s)	16, 611
GluI	GCNGC	1 cut(s)	519
HhaI	GCGC	2 cut(s)	17, 612
Hin1II	CATG	5 cut(s)	155, 202, 383, 430, 600
Hin6I	GCGC	2 cut(s)	15, 610
HinP1I	GCGC	2 cut(s)	15, 610
HincII	GTYRAC	1 cut(s)	41
HindII	GTYRAC	1 cut(s)	41
HinfI	GANTC	2 cut(s)	42, 652
HphI	GGTGA	2 cut(s)	263, 491
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	190, 418
Hpy188III	TCNNGA	1 cut(s)	660
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	6 cut(s)	56, 149, 273, 377, 501, 666
HpyCH4III	ACNGT	2 cut(s)	60, 288
HpyCH4V	TGCA	2 cut(s)	84, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 309
HpyF3I	CTNAG	2 cut(s)	189, 417
Hsp92II	CATG	5 cut(s)	155, 202, 383, 430, 600
HspAI	GCGC	2 cut(s)	15, 610
LmnI	GCTCC	2 cut(s)	198, 426
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	2 cut(s)	93, 321
MaeIII	GTNAC	1 cut(s)	9
MhlI	GDGCHC	4 cut(s)	175, 195, 403, 423
MluCI	AATT	4 cut(s)	237, 273, 465, 501
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	2 cut(s)	563, 596
Mph1103I	ATGCAT	2 cut(s)	86, 314
MroXI	GAANNNNTTC	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	585
MspR9I	CCNGG	6 cut(s)	169, 217, 397, 445, 628, 634
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	6 cut(s)	169, 217, 397, 445, 628, 634
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	81, 309
NlaIII	CATG	5 cut(s)	155, 202, 383, 430, 600
NmeAIII	GCCGAG	1 cut(s)	626
NsiI	ATGCAT	2 cut(s)	86, 314
PctI	GAATGC	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	652
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
Psp124BI	GAGCTC	2 cut(s)	195, 423
Psp6I	CCWGG	6 cut(s)	167, 215, 395, 443, 626, 632
PspGI	CCWGG	6 cut(s)	167, 215, 395, 443, 626, 632
PspPI	GGNCC	1 cut(s)	630
RsaI	GTAC	4 cut(s)	134, 269, 362, 497
RsaNI	GTAC	4 cut(s)	133, 268, 361, 496
RseI	CAYNNNNRTG	1 cut(s)	585
SacI	GAGCTC	2 cut(s)	195, 423
SalI	GTCGAC	1 cut(s)	39
SatI	GCNGC	1 cut(s)	519
Sau96I	GGNCC	1 cut(s)	630
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	6 cut(s)	169, 217, 397, 445, 628, 634
SduI	GDGCHC	4 cut(s)	175, 195, 403, 423
SetI	ASST	5 cut(s)	163, 195, 391, 423, 643
SfaNI	GCATC	2 cut(s)	93, 321
SfcI	CTRYAG	1 cut(s)	565
SinI	GGWCC	1 cut(s)	630
SmiMI	CAYNNNNRTG	1 cut(s)	585
SmlI	CTYRAG	2 cut(s)	128, 356
SmoI	CTYRAG	2 cut(s)	128, 356
Sse9I	AATT	4 cut(s)	237, 273, 465, 501
SsiI	CCGC	1 cut(s)	649
SstI	GAGCTC	2 cut(s)	195, 423
StyD4I	CCNGG	6 cut(s)	167, 215, 395, 443, 626, 632
TaaI	ACNGT	2 cut(s)	60, 288
TaqI	TCGA	1 cut(s)	40
TasI	AATT	4 cut(s)	237, 273, 465, 501
TatI	WGTACW	2 cut(s)	267, 495
TfiI	GAWTC	1 cut(s)	652
TseI	GCWGC	1 cut(s)	518
TspDTI	ATGAA	2 cut(s)	270, 498
VpaK11BI	GGWCC	1 cut(s)	630
XmiI	GTMKAC	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	288
Zsp2I	ATGCAT	2 cut(s)	86, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.