Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0015954

Physical Location & Seq

Genomic Coordinates Forward (+)

59456644 .. 59459257

Gene Structure 2614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG365800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTCGTGACTCTCGTTTCAGTTGTAGTGATGATCATTGGTTTTTTGTATTTTGAAGTCGGAAAGAACAGATTTATATGTCATTGTCATCTGAACTCCTGTTTTTACTTGCAGTTTCGTGGGACACGCACCCAATGCATCAGTATAAAAGCAGGAATGGATATCCCAGACAACAAGTCCCTTGAGTACGCCCTTCCATACATACATGGCATAGGTAGAGCCAGGGCTCGCCACATCCTATCTGAGCTCCACATGGACAACAAACTTGCCAGGGACTTGACTAAAAGAGAAATTGTTGCTCTTGGTGATGAACTCTCCAAGTACATAATTGGAAGGGAACTGGCAGCAGTTGTTGAGAAAGACGTTAGACGAATGATAGACATCCAGTCCTACAGAGGGATAAGACATAATGATGGGTTGCCATGCCGAGGACAGCGCACCAAGACCAATGCCCGGACCAGGAAAGCTGGTAAGCGGATTCCTTCTGGAGTGAGGAACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

167

Amino Acids

19.07

Weight (kDa)

10.07

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	52 - 153	4.6e-26	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77750
fragaria_vesca	FvH4_2g26171
malus_domestica	MD10G1050000.v1.1
prunus_persica	Prupe.1G504900_v2.0.a1
pyrus_communis	pycom10g03520
rosa_chinensis	RchiOBHm_Chr6g0294601
rosa_laevigata	RLG00000011855
rosa_multiflora	Rmu_sc0006264.1_g000011 Rmu_sc0007845.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173170
rosa_samantha	Rh6AG358600 Rh6BG365800 Rh6CG372400 Rh6DG359200
rosa_wichuraiana	Rw6G031290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	475
AfaI	GTAC	2 cut(s)	188, 323
AfiI	CCNNNNNNNGG	4 cut(s)	396, 428, 453, 459
AgsI	TTSAA	1 cut(s)	56
AhdI	GACNNNNNGTC	2 cut(s)	175, 385
AjnI	CCWGG	3 cut(s)	221, 269, 458
AluBI	AGCT	2 cut(s)	247, 467
AluI	AGCT	2 cut(s)	247, 467
Alw21I	GWGCWC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	456
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	456
BanII	GRGCYC	2 cut(s)	229, 249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	1 cut(s)	407
BciT130I	CCWGG	3 cut(s)	223, 271, 460
BclI	TGATCA	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	454
BfmI	CTRYAG	1 cut(s)	391
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	4 cut(s)	223, 271, 454, 460
Bme18I	GGWCC	1 cut(s)	456
BmeRI	GACNNNNNGTC	2 cut(s)	175, 385
BmgT120I	GGNCC	1 cut(s)	456
BmrFI	CCNGG	4 cut(s)	223, 271, 454, 460
BmsI	GCATC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	454
BsaBI	GATNNNNATC	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	222, 270, 427
Bsc4I	CCNNNNNNNGG	4 cut(s)	396, 428, 453, 459
Bse1I	ACTGG	2 cut(s)	345, 385
Bse8I	GATNNNNATC	1 cut(s)	380
BseBI	CCWGG	3 cut(s)	223, 271, 460
BseDI	CCNNGG	3 cut(s)	222, 270, 427
BseGI	GGATG	2 cut(s)	234, 381
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	4 cut(s)	396, 428, 453, 459
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	345, 385
BseXI	GCAGC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	454
BslFI	GGGAC	3 cut(s)	136, 163, 287
BslI	CCNNNNNNNGG	4 cut(s)	396, 428, 453, 459
BsmFI	GGGAC	3 cut(s)	136, 163, 287
Bsp1286I	GDGCHC	2 cut(s)	229, 249
Bsp143I	GATC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	475
BspCNI	CTCAG	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	345, 385
BssECI	CCNNGG	3 cut(s)	222, 270, 427
BssMI	GATC	1 cut(s)	33
Bst2UI	CCWGG	3 cut(s)	223, 271, 460
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	234, 381
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	3 cut(s)	223, 271, 460
BstSCI	CCNGG	4 cut(s)	221, 269, 452, 458
BstSFI	CTRYAG	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	234, 381
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	456
Csp6I	GTAC	2 cut(s)	187, 322
CviAII	CATG	3 cut(s)	206, 253, 423
CviJI	RGCY	4 cut(s)	221, 227, 247, 467
CviKI_1	RGCY	4 cut(s)	221, 227, 247, 467
CviQI	GTAC	2 cut(s)	187, 322
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
DriI	GACNNNNNGTC	2 cut(s)	175, 385
Eam1105I	GACNNNNNGTC	2 cut(s)	175, 385
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	2 cut(s)	229, 249
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	456
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	3 cut(s)	221, 269, 458
EcoRV	GATATC	1 cut(s)	163
EcoT22I	ATGCAT	1 cut(s)	140
EcoT38I	GRGCYC	2 cut(s)	229, 249
FaeI	CATG	3 cut(s)	209, 256, 426
FaqI	GGGAC	3 cut(s)	136, 163, 287
FatI	CATG	3 cut(s)	205, 252, 422
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	2 cut(s)	221, 368
FriOI	GRGCYC	2 cut(s)	229, 249
Fsp4HI	GCNGC	1 cut(s)	345
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	1 cut(s)	345
HapII	CCGG	1 cut(s)	454
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	209, 256, 426
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HinfI	GANTC	2 cut(s)	10, 478
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	3 cut(s)	62, 93, 244
Hpy188III	TCNNGA	2 cut(s)	7, 486
HpyAV	CCTTC	3 cut(s)	203, 327, 492
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	2 cut(s)	112, 138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	209, 256, 426
HspAI	GCGC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	33
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	1 cut(s)	147
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MhlI	GDGCHC	2 cut(s)	229, 249
MluCI	AATT	2 cut(s)	291, 327
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	3 cut(s)	389, 422, 486
Mph1103I	ATGCAT	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	411
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	4 cut(s)	223, 271, 454, 460
MvaI	CCWGG	3 cut(s)	223, 271, 460
MwoI	GCNNNNNNNGC	1 cut(s)	135
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	3 cut(s)	209, 256, 426
NmeAIII	GCCGAG	1 cut(s)	452
NmuCI	GTSAC	1 cut(s)	7
NsiI	ATGCAT	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	3 cut(s)	221, 269, 458
PspGI	CCWGG	3 cut(s)	221, 269, 458
PspPI	GGNCC	1 cut(s)	456
RsaI	GTAC	2 cut(s)	188, 323
RsaNI	GTAC	2 cut(s)	187, 322
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	249
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	1 cut(s)	33
Sau96I	GGNCC	1 cut(s)	456
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	4 cut(s)	223, 271, 454, 460
SduI	GDGCHC	2 cut(s)	229, 249
SetI	ASST	4 cut(s)	217, 249, 366, 469
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	291, 327
SsiI	CCGC	1 cut(s)	475
SstI	GAGCTC	1 cut(s)	249
StyD4I	CCNGG	4 cut(s)	221, 269, 452, 458
TaiI	ACGT	1 cut(s)	366
TasI	AATT	2 cut(s)	291, 327
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	456
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.