Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015954

Physical Location & Seq

Genomic Coordinates Reverse (-)

13285195 .. 13287143

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTTGGGTTACGCGCAGTCGCTTCAAATGTTGGGGGTCGACTCCTCCAATCTTTACCGTTTTGTGGGACACGCACCCAATGCATCACTATAAAAGCAGGAATGGATATCCCAGACAACAAGTCCCTTGAGTACGCCCTTCCATACATACATGGCATAGGTAGAGCCAGGGCTCGCCACATCCTATCTGAGCTCCACATGGACAACAAACTTGCCAGGGACTTGACTAAAAGAGAAATTGTTGCTCTTGGTGATGAACTCTCCAAGTACATAATTGGAAGGGAACTGGTGGCAGTTGTTGAGAAAGACGTTAGACGAATGATAGACATCCAGTCCTACAGAGGGATAAGACATAATGATGGGTTGCCATGCCGAGGACAGCGCACCAAGACCAATGCCCGGACCAGGAAAGCTGGTAAGCGGATTCCTTCTGGAGTGAGGAACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

149

Amino Acids

16.72

Weight (kDa)

10.48

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	34 - 135	7e-26	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77750
fragaria_vesca	FvH4_2g26171
malus_domestica	MD10G1050000.v1.1
prunus_persica	Prupe.1G504900_v2.0.a1
pyrus_communis	pycom10g03520
rosa_chinensis	RchiOBHm_Chr6g0294601
rosa_laevigata	RLG00000011855
rosa_multiflora	Rmu_sc0006264.1_g000011 Rmu_sc0007845.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173170
rosa_samantha	Rh6AG358600 Rh6BG365800 Rh6CG372400 Rh6DG359200
rosa_wichuraiana	Rw6G031290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	40
AccII	CGCG	1 cut(s)	15
AciI	CCGC	1 cut(s)	421
AfaI	GTAC	2 cut(s)	134, 269
AfiI	CCNNNNNNNGG	5 cut(s)	65, 342, 374, 399, 405
AgsI	TTSAA	1 cut(s)	27
AhdI	GACNNNNNGTC	2 cut(s)	121, 331
AjnI	CCWGG	3 cut(s)	167, 215, 404
AluBI	AGCT	2 cut(s)	193, 413
AluI	AGCT	2 cut(s)	193, 413
Alw21I	GWGCWC	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	17, 384
AspS9I	GGNCC	1 cut(s)	402
AsuC2I	CCSGG	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	402
BanII	GRGCYC	2 cut(s)	175, 195
Bbv12I	GWGCWC	1 cut(s)	195
BccI	CCATC	1 cut(s)	353
BciT130I	CCWGG	3 cut(s)	169, 217, 406
BcnI	CCSGG	1 cut(s)	400
BfmI	CTRYAG	1 cut(s)	337
Bme1390I	CCNGG	4 cut(s)	169, 217, 400, 406
Bme18I	GGWCC	1 cut(s)	402
BmeRI	GACNNNNNGTC	2 cut(s)	121, 331
BmgT120I	GGNCC	1 cut(s)	402
BmrFI	CCNGG	4 cut(s)	169, 217, 400, 406
BmsI	GCATC	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	168, 216, 373
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 342, 374, 399, 405
Bse1I	ACTGG	2 cut(s)	291, 331
Bse8I	GATNNNNATC	1 cut(s)	326
BseBI	CCWGG	3 cut(s)	169, 217, 406
BseDI	CCNNGG	3 cut(s)	168, 216, 373
BseGI	GGATG	2 cut(s)	180, 327
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	5 cut(s)	65, 342, 374, 399, 405
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	291, 331
BseRI	GAGGAG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	400
BslFI	GGGAC	3 cut(s)	82, 109, 233
BslI	CCNNNNNNNGG	5 cut(s)	65, 342, 374, 399, 405
BsmFI	GGGAC	3 cut(s)	82, 109, 233
Bsp1286I	GDGCHC	2 cut(s)	175, 195
BspACI	CCGC	1 cut(s)	421
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	291, 331
BssECI	CCNNGG	3 cut(s)	168, 216, 373
Bst2UI	CCWGG	3 cut(s)	169, 217, 406
Bst4CI	ACNGT	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	180, 327
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	17, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	3 cut(s)	169, 217, 406
BstSCI	CCNGG	4 cut(s)	167, 215, 398, 404
BstSFI	CTRYAG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	180, 327
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	2 cut(s)	17, 384
Cfr13I	GGNCC	1 cut(s)	402
Csp6I	GTAC	2 cut(s)	133, 268
CviAII	CATG	3 cut(s)	152, 199, 369
CviJI	RGCY	4 cut(s)	167, 173, 193, 413
CviKI_1	RGCY	4 cut(s)	167, 173, 193, 413
CviQI	GTAC	2 cut(s)	133, 268
DdeI	CTNAG	1 cut(s)	189
DriI	GACNNNNNGTC	2 cut(s)	121, 331
Eam1105I	GACNNNNNGTC	2 cut(s)	121, 331
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	2 cut(s)	175, 195
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	402
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	3 cut(s)	167, 215, 404
EcoRV	GATATC	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	86
EcoT38I	GRGCYC	2 cut(s)	175, 195
FaeI	CATG	3 cut(s)	155, 202, 372
FaiI	YATR	9 cut(s)	92, 145, 149, 153, 158, 200, 272, 354, 370
FaqI	GGGAC	3 cut(s)	82, 109, 233
FatI	CATG	3 cut(s)	151, 198, 368
FblI	GTMKAC	1 cut(s)	40
FokI	GGATG	2 cut(s)	167, 314
FriOI	GRGCYC	2 cut(s)	175, 195
GlaI	GCGC	2 cut(s)	16, 383
HapII	CCGG	1 cut(s)	400
HhaI	GCGC	2 cut(s)	17, 384
Hin1II	CATG	3 cut(s)	155, 202, 372
Hin6I	GCGC	2 cut(s)	15, 382
HinP1I	GCGC	2 cut(s)	15, 382
HincII	GTYRAC	1 cut(s)	41
HindII	GTYRAC	1 cut(s)	41
HinfI	GANTC	2 cut(s)	42, 424
HpaII	CCGG	1 cut(s)	400
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	432
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	149, 273, 438
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	155, 202, 372
HspAI	GCGC	2 cut(s)	15, 382
LmnI	GCTCC	1 cut(s)	198
LweI	GCATC	1 cut(s)	93
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	9
MhlI	GDGCHC	2 cut(s)	175, 195
MluCI	AATT	2 cut(s)	237, 273
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	4 cut(s)	56, 335, 368, 432
Mph1103I	ATGCAT	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	4 cut(s)	169, 217, 400, 406
MvaI	CCWGG	3 cut(s)	169, 217, 406
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	81
NciI	CCSGG	1 cut(s)	400
NlaIII	CATG	3 cut(s)	155, 202, 372
NmeAIII	GCCGAG	1 cut(s)	398
NsiI	ATGCAT	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	424
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	3 cut(s)	167, 215, 404
PspGI	CCWGG	3 cut(s)	167, 215, 404
PspPI	GGNCC	1 cut(s)	402
RsaI	GTAC	2 cut(s)	134, 269
RsaNI	GTAC	2 cut(s)	133, 268
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	402
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	4 cut(s)	169, 217, 400, 406
SduI	GDGCHC	2 cut(s)	175, 195
SetI	ASST	4 cut(s)	163, 195, 312, 415
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	337
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	237, 273
SsiI	CCGC	1 cut(s)	421
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	4 cut(s)	167, 215, 398, 404
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	40
TasI	AATT	2 cut(s)	237, 273
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	424
TspDTI	ATGAA	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.