Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015954

Physical Location & Seq

Genomic Coordinates Forward (+)

56849259 .. 56851534

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26441

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTTGGGTTACGCGCAGTCGCTTCAAATGTTGGGGGTCGACTCCTTCAATCTTTACCGTTTCGTGGGACACGCACCCAATGCATCACTATAAAAGCAGGAATGGATATCCCAGACAACAAGTCCCTTGAGTACGCCCTTCCATACATACATGGCATAGGTAGAGCCAGGGCTCGCCACATCCTATCTGAGCTCCACATGGACAACAAACTTGCCAGGGACTTGACTAAAAGAGAAATTGTTGCTCTTGGTGATGAACTCTCCAAGTACATAATTGGAAGGGAACTGGCAGCAGTTGTTGAGAAAGATGTTAGACGAATGATAGACATCCAGTCCTACAGAGGGATAAGGCATAATGATGGGTTGCCATGCCGAGGACAGCGCACCAAGACCAATGCCAGGACCAGGAAAGCTGGTAAGCGGATTCCTTCTGGAGTAAGGAACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

149

Amino Acids

16.75

Weight (kDa)

10.76

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	34 - 135	3.3e-26	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77750
fragaria_vesca	FvH4_2g26171
malus_domestica	MD10G1050000.v1.1
prunus_persica	Prupe.1G504900_v2.0.a1
pyrus_communis	pycom10g03520
rosa_chinensis	RchiOBHm_Chr6g0294601
rosa_laevigata	RLG00000011855
rosa_multiflora	Rmu_sc0006264.1_g000011 Rmu_sc0007845.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173170
rosa_samantha	Rh6AG358600 Rh6BG365800 Rh6CG372400 Rh6DG359200
rosa_wichuraiana	Rw6G031290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	40
AccII	CGCG	1 cut(s)	15
AciI	CCGC	1 cut(s)	421
AfaI	GTAC	2 cut(s)	134, 269
AfiI	CCNNNNNNNGG	5 cut(s)	65, 342, 374, 399, 405
AgsI	TTSAA	2 cut(s)	27, 50
AhdI	GACNNNNNGTC	2 cut(s)	121, 331
AjnI	CCWGG	4 cut(s)	167, 215, 398, 404
AluBI	AGCT	2 cut(s)	193, 413
AluI	AGCT	2 cut(s)	193, 413
Alw21I	GWGCWC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	17, 384
AspS9I	GGNCC	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	402
BanII	GRGCYC	2 cut(s)	175, 195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	1 cut(s)	353
BciT130I	CCWGG	4 cut(s)	169, 217, 400, 406
BfmI	CTRYAG	1 cut(s)	337
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	4 cut(s)	169, 217, 400, 406
Bme18I	GGWCC	1 cut(s)	402
BmeRI	GACNNNNNGTC	2 cut(s)	121, 331
BmgT120I	GGNCC	1 cut(s)	402
BmrFI	CCNGG	4 cut(s)	169, 217, 400, 406
BmsI	GCATC	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	168, 216, 373
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 342, 374, 399, 405
Bse1I	ACTGG	2 cut(s)	291, 331
Bse8I	GATNNNNATC	1 cut(s)	326
BseBI	CCWGG	4 cut(s)	169, 217, 400, 406
BseDI	CCNNGG	3 cut(s)	168, 216, 373
BseGI	GGATG	2 cut(s)	180, 327
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	5 cut(s)	65, 342, 374, 399, 405
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	291, 331
BseXI	GCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	195
BslFI	GGGAC	3 cut(s)	82, 109, 233
BslI	CCNNNNNNNGG	5 cut(s)	65, 342, 374, 399, 405
BsmFI	GGGAC	3 cut(s)	82, 109, 233
Bsp1286I	GDGCHC	2 cut(s)	175, 195
BspACI	CCGC	1 cut(s)	421
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	291, 331
BssECI	CCNNGG	3 cut(s)	168, 216, 373
Bst2UI	CCWGG	4 cut(s)	169, 217, 400, 406
Bst4CI	ACNGT	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	180, 327
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	17, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	4 cut(s)	169, 217, 400, 406
BstSCI	CCNGG	4 cut(s)	167, 215, 398, 404
BstSFI	CTRYAG	1 cut(s)	337
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	180, 327
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	2 cut(s)	17, 384
Cfr13I	GGNCC	1 cut(s)	402
Csp6I	GTAC	2 cut(s)	133, 268
CviAII	CATG	3 cut(s)	152, 199, 369
CviJI	RGCY	4 cut(s)	167, 173, 193, 413
CviKI_1	RGCY	4 cut(s)	167, 173, 193, 413
CviQI	GTAC	2 cut(s)	133, 268
DdeI	CTNAG	1 cut(s)	189
DriI	GACNNNNNGTC	2 cut(s)	121, 331
Eam1105I	GACNNNNNGTC	2 cut(s)	121, 331
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	2 cut(s)	175, 195
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	402
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	4 cut(s)	167, 215, 398, 404
EcoRV	GATATC	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	86
EcoT38I	GRGCYC	2 cut(s)	175, 195
FaeI	CATG	3 cut(s)	155, 202, 372
FaiI	YATR	9 cut(s)	92, 145, 149, 153, 158, 200, 272, 354, 370
FaqI	GGGAC	3 cut(s)	82, 109, 233
FatI	CATG	3 cut(s)	151, 198, 368
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	2 cut(s)	167, 314
FriOI	GRGCYC	2 cut(s)	175, 195
Fsp4HI	GCNGC	1 cut(s)	291
GlaI	GCGC	2 cut(s)	16, 383
GluI	GCNGC	1 cut(s)	291
HhaI	GCGC	2 cut(s)	17, 384
Hin1II	CATG	3 cut(s)	155, 202, 372
Hin6I	GCGC	2 cut(s)	15, 382
HinP1I	GCGC	2 cut(s)	15, 382
HincII	GTYRAC	1 cut(s)	41
HindII	GTYRAC	1 cut(s)	41
HinfI	GANTC	2 cut(s)	42, 424
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	432
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	56, 149, 273, 438
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	155, 202, 372
HspAI	GCGC	2 cut(s)	15, 382
LmnI	GCTCC	1 cut(s)	198
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	9
MhlI	GDGCHC	2 cut(s)	175, 195
MluCI	AATT	2 cut(s)	237, 273
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	2 cut(s)	335, 368
Mph1103I	ATGCAT	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	357
MspR9I	CCNGG	4 cut(s)	169, 217, 400, 406
MvaI	CCWGG	4 cut(s)	169, 217, 400, 406
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	81
NlaIII	CATG	3 cut(s)	155, 202, 372
NmeAIII	GCCGAG	1 cut(s)	398
NsiI	ATGCAT	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	424
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	4 cut(s)	167, 215, 398, 404
PspGI	CCWGG	4 cut(s)	167, 215, 398, 404
PspPI	GGNCC	1 cut(s)	402
RsaI	GTAC	2 cut(s)	134, 269
RsaNI	GTAC	2 cut(s)	133, 268
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	195
SalI	GTCGAC	1 cut(s)	39
SatI	GCNGC	1 cut(s)	291
Sau96I	GGNCC	1 cut(s)	402
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	4 cut(s)	169, 217, 400, 406
SduI	GDGCHC	2 cut(s)	175, 195
SetI	ASST	3 cut(s)	163, 195, 415
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	337
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	237, 273
SsiI	CCGC	1 cut(s)	421
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	4 cut(s)	167, 215, 398, 404
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	40
TasI	AATT	2 cut(s)	237, 273
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	424
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.