Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0015954

Physical Location & Seq

Genomic Coordinates Forward (+)

55690559 .. 55693190

Gene Structure 2632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG359200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGATATCCCAGACAACAAGTCCCTTGAGTACGCCCTTCCATACATACATGGCATAGGTAGAGCCAGGGCTCGCCACATCCTATCTGAGCTCCACATGGACAACAAACTTGCCAGGGACTTGACTAAAAGAGAAATTGTTGCTCTTGGTGATGAACTCTCCAAGTACATAATTGGAAGGGAACTGGCAGCAGTTGTTGAGAAAGACGTTAGACGAATGATAGACATCCAGTCCTACAGAGGGATAAGACATAATGATGGGTTGCCATGCCGAGGACAGCGCACCAAGACCAATGCCCGGACCAGGAAAGCTGGTAAGCGGATTCCTTCTGGAGTGAGGAACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0022613 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

115

Amino Acids

13.14

Weight (kDa)

10.31

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	2 - 101	5.9e-26	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77750
fragaria_vesca	FvH4_2g26171
malus_domestica	MD10G1050000.v1.1
prunus_persica	Prupe.1G504900_v2.0.a1
pyrus_communis	pycom10g03520
rosa_chinensis	RchiOBHm_Chr6g0294601
rosa_laevigata	RLG00000011855
rosa_multiflora	Rmu_sc0006264.1_g000011 Rmu_sc0007845.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173170
rosa_samantha	Rh6AG358600 Rh6BG365800 Rh6CG372400 Rh6DG359200
rosa_wichuraiana	Rw6G031290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	319
AfaI	GTAC	2 cut(s)	32, 167
AfiI	CCNNNNNNNGG	4 cut(s)	240, 272, 297, 303
AhdI	GACNNNNNGTC	2 cut(s)	19, 229
AjnI	CCWGG	3 cut(s)	65, 113, 302
AluBI	AGCT	2 cut(s)	91, 311
AluI	AGCT	2 cut(s)	91, 311
Alw21I	GWGCWC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	300
AsuC2I	CCSGG	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	300
BanII	GRGCYC	2 cut(s)	73, 93
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	3 cut(s)	67, 115, 304
BcnI	CCSGG	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	4 cut(s)	67, 115, 298, 304
Bme18I	GGWCC	1 cut(s)	300
BmeRI	GACNNNNNGTC	2 cut(s)	19, 229
BmgT120I	GGNCC	1 cut(s)	300
BmrFI	CCNGG	4 cut(s)	67, 115, 298, 304
BpuEI	CTTGAG	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	224
BsaJI	CCNNGG	3 cut(s)	66, 114, 271
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 272, 297, 303
Bse1I	ACTGG	2 cut(s)	189, 229
Bse8I	GATNNNNATC	1 cut(s)	224
BseBI	CCWGG	3 cut(s)	67, 115, 304
BseDI	CCNNGG	3 cut(s)	66, 114, 271
BseGI	GGATG	2 cut(s)	78, 225
BseJI	GATNNNNATC	1 cut(s)	224
BseLI	CCNNNNNNNGG	4 cut(s)	240, 272, 297, 303
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	189, 229
BseXI	GCAGC	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	2 cut(s)	7, 131
BslI	CCNNNNNNNGG	4 cut(s)	240, 272, 297, 303
BsmFI	GGGAC	2 cut(s)	7, 131
Bsp1286I	GDGCHC	2 cut(s)	73, 93
BspACI	CCGC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	189, 229
BssECI	CCNNGG	3 cut(s)	66, 114, 271
Bst2UI	CCWGG	3 cut(s)	67, 115, 304
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	78, 225
BstHHI	GCGC	1 cut(s)	282
BstNI	CCWGG	3 cut(s)	67, 115, 304
BstSCI	CCNGG	4 cut(s)	65, 113, 296, 302
BstSFI	CTRYAG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	200
BtsCI	GGATG	2 cut(s)	78, 225
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	300
Csp6I	GTAC	2 cut(s)	31, 166
CviAII	CATG	3 cut(s)	50, 97, 267
CviJI	RGCY	4 cut(s)	65, 71, 91, 311
CviKI_1	RGCY	4 cut(s)	65, 71, 91, 311
CviQI	GTAC	2 cut(s)	31, 166
DdeI	CTNAG	1 cut(s)	87
DriI	GACNNNNNGTC	2 cut(s)	19, 229
Eam1105I	GACNNNNNGTC	2 cut(s)	19, 229
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	2 cut(s)	73, 93
Eco32I	GATATC	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoRII	CCWGG	3 cut(s)	65, 113, 302
EcoRV	GATATC	1 cut(s)	7
EcoT38I	GRGCYC	2 cut(s)	73, 93
FaeI	CATG	3 cut(s)	53, 100, 270
FaiI	YATR	8 cut(s)	43, 47, 51, 56, 98, 170, 252, 268
FaqI	GGGAC	2 cut(s)	7, 131
FatI	CATG	3 cut(s)	49, 96, 266
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	2 cut(s)	65, 212
FriOI	GRGCYC	2 cut(s)	73, 93
Fsp4HI	GCNGC	1 cut(s)	189
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	189
HapII	CCGG	1 cut(s)	298
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	3 cut(s)	53, 100, 270
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	330
HpyAV	CCTTC	3 cut(s)	47, 171, 336
HpyCH4IV	ACGT	1 cut(s)	207
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	3 cut(s)	53, 100, 270
HspAI	GCGC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	96
Lsp1109I	GCAGC	1 cut(s)	200
MaeII	ACGT	1 cut(s)	207
MhlI	GDGCHC	2 cut(s)	73, 93
MluCI	AATT	2 cut(s)	135, 171
MnlI	CCTC	3 cut(s)	233, 266, 330
MslI	CAYNNNNRTG	1 cut(s)	255
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	4 cut(s)	67, 115, 298, 304
MvaI	CCWGG	3 cut(s)	67, 115, 304
NciI	CCSGG	1 cut(s)	298
NlaIII	CATG	3 cut(s)	53, 100, 270
NmeAIII	GCCGAG	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	65, 113, 302
PspGI	CCWGG	3 cut(s)	65, 113, 302
PspPI	GGNCC	1 cut(s)	300
RsaI	GTAC	2 cut(s)	32, 167
RsaNI	GTAC	2 cut(s)	31, 166
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	93
SatI	GCNGC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	300
ScrFI	CCNGG	4 cut(s)	67, 115, 298, 304
SduI	GDGCHC	2 cut(s)	73, 93
SetI	ASST	4 cut(s)	61, 93, 210, 313
SfcI	CTRYAG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	135, 171
SsiI	CCGC	1 cut(s)	319
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	4 cut(s)	65, 113, 296, 302
TaiI	ACGT	1 cut(s)	210
TasI	AATT	2 cut(s)	135, 171
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	322
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.