Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016014

Physical Location & Seq

Genomic Coordinates Forward (+)

29575806 .. 29577880

Gene Structure 2075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCGGTTCTTTGCTCGTCTTCGACGGTGATACTCTCTTCTTCTTCCGTGAAATCCTCCGGAAGTGAGAGAAAGTCTCCGTTTTTAGGGTTCTCTTTAACGGCTATCTCGAAGCCGTCGGTACGAGTCGGCATTTATGCGAATTCGAAAAGAGGATTGCAAGTGAAGTGTGAAGCTGAGCCGACGACGACGACTTCTCTTGTTCCGGCGAATCAACGATGGATGTTCGACGAAGAAGAAGCTAATGGCCCTGACATCTGGAACACGACATGGTATCCAAAAGCTTCAGACCATGTGAACACGGACAAGCCCTGGTTTGTGGTTGATGCAACTGACAAAATTCTTGGTAGATTGGCATCGACAATTGCTAATCACATCCGTGGGAAGAATCTTGCCTCTTACACTCCTAGTGTCGACATGGGAGCTTTTGTGATTGTGGTGAATGCTGAGAAAGTTGCTGTATCTGGAAAGAAGCGTAACCAAAAGCTGTACAGGAGGCATTCAGGACGACCTGGTGGTATGACAGTAGAGACATTTGATCAATTGCAGCAGAGAATTCCTGAAAGAATCGTTGAGCATGCTGTTCGTGGAATGCTTCCAAAGGGACGGCTTGGGAGAGCTCTGTTCAATCACCTGAAGGTGTACAAAGGCCCTGACCATCCTCACGAGGCCCAGAAACCGCTTGATCTGCCTATCAGGGACAAGAGAATACAGCTGCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

241

Amino Acids

26.79

Weight (kDa)

9.93

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	104 - 221	3.9e-44	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78630
fragaria_vesca	FvH4_3g17780
malus_domestica	MD03G1248000.v1.1
prunus_persica	Prupe.4G156900_v2.0.a1
pyrus_communis	pycom03g19670 pycom11g23810
rosa_chinensis	RchiOBHm_Chr5g0029571
rosa_laevigata	RLG00000033180
rosa_multiflora	Rmu_sc0001608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050370
rosa_samantha	Rh5AG207200 Rh5BG205900 Rh5CG228100 Rh5DG209700
rosa_wichuraiana	Rw5G018850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	414
AccIII	TCCGGA	1 cut(s)	59
AciI	CCGC	2 cut(s)	5, 680
AcsI	RAATTY	3 cut(s)	142, 339, 555
AcuI	CTGAAG	2 cut(s)	270, 656
AfaI	GTAC	3 cut(s)	123, 491, 644
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	628
AjnI	CCWGG	2 cut(s)	311, 511
AleI	CACNNNNGTG	1 cut(s)	378
AluBI	AGCT	7 cut(s)	176, 242, 284, 425, 487, 620, 715
AluI	AGCT	7 cut(s)	176, 242, 284, 425, 487, 620, 715
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	2 cut(s)	81, 524
Aor13HI	TCCGGA	1 cut(s)	59
AoxI	GGCC	3 cut(s)	247, 649, 669
ApeKI	GCWGC	2 cut(s)	547, 715
ApoI	RAATTY	3 cut(s)	142, 339, 555
AspS9I	GGNCC	3 cut(s)	248, 650, 670
AsuHPI	GGTGA	3 cut(s)	40, 451, 623
AsuII	TTCGAA	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	622
BauI	CACGAG	1 cut(s)	665
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	2 cut(s)	559, 702
BccI	CCATC	2 cut(s)	213, 666
BceAI	ACGGC	3 cut(s)	100, 117, 623
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	2 cut(s)	313, 513
BciVI	GTATCC	1 cut(s)	285
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	81, 524
BfaI	CTAG	1 cut(s)	408
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	2 cut(s)	548, 716
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	2 cut(s)	549, 717
Bme1390I	CCNGG	2 cut(s)	313, 513
BmgT120I	GGNCC	3 cut(s)	248, 650, 670
BmrFI	CCNGG	2 cut(s)	313, 513
BmsI	GCATC	2 cut(s)	316, 365
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
Bpu1102I	GCTNAGC	1 cut(s)	177
Bpu14I	TTCGAA	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	355
BsaJI	CCNNGG	2 cut(s)	311, 379
BsaWI	WCCGGW	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	355
BseAI	TCCGGA	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	313, 513
BseDI	CCNNGG	2 cut(s)	311, 379
BseGI	GGATG	3 cut(s)	228, 375, 658
BseJI	GATNNNNATC	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	168, 438
BseXI	GCAGC	2 cut(s)	559, 702
BshFI	GGCC	3 cut(s)	249, 651, 671
BsiHKAI	GWGCWC	1 cut(s)	622
BsiSI	CCGG	2 cut(s)	60, 206
BslFI	GGGAC	2 cut(s)	618, 713
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	2 cut(s)	81, 524
BsmFI	GGGAC	2 cut(s)	618, 713
BsmI	GAATGC	3 cut(s)	448, 499, 597
BsnI	GGCC	3 cut(s)	249, 651, 671
Bsp119I	TTCGAA	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp13I	TCCGGA	1 cut(s)	59
Bsp1407I	TGTACA	2 cut(s)	489, 642
Bsp143I	GATC	2 cut(s)	538, 685
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	2 cut(s)	5, 680
BspANI	GGCC	3 cut(s)	249, 651, 671
BspCNI	CTCAG	2 cut(s)	169, 439
BspEI	TCCGGA	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	146
BsrGI	TGTACA	2 cut(s)	489, 642
BssECI	CCNNGG	2 cut(s)	311, 379
BssMI	GATC	2 cut(s)	538, 685
BssSI	CACGAG	1 cut(s)	665
Bst2BI	CACGAG	1 cut(s)	665
Bst2UI	CCWGG	2 cut(s)	313, 513
Bst4CI	ACNGT	2 cut(s)	28, 526
Bst6I	CTCTTC	1 cut(s)	43
BstAUI	TGTACA	2 cut(s)	489, 642
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	2 cut(s)	177, 447
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	3 cut(s)	228, 375, 658
BstKTI	GATC	2 cut(s)	541, 688
BstMAI	GTCTC	2 cut(s)	81, 524
BstMBI	GATC	2 cut(s)	538, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	688
BstNI	CCWGG	2 cut(s)	313, 513
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	2 cut(s)	311, 511
BstV1I	GCAGC	2 cut(s)	559, 702
BstV2I	GAAGAC	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	249, 651, 671
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	3 cut(s)	228, 375, 658
Cac8I	GCNNGC	1 cut(s)	579
Cfr13I	GGNCC	3 cut(s)	248, 650, 670
CsiI	ACCWGGT	1 cut(s)	511
Csp6I	GTAC	3 cut(s)	122, 490, 643
CviAII	CATG	4 cut(s)	270, 293, 418, 578
CviQI	GTAC	3 cut(s)	122, 490, 643
DdeI	CTNAG	2 cut(s)	177, 447
DpnI	GATC	2 cut(s)	540, 687
DpnII	GATC	2 cut(s)	538, 685
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	622
Eco53kI	GAGCTC	1 cut(s)	620
Eco57I	CTGAAG	2 cut(s)	270, 656
EcoICRI	GAGCTC	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	650
EcoRI	GAATTC	2 cut(s)	142, 555
EcoRII	CCWGG	2 cut(s)	311, 511
EcoT38I	GRGCYC	1 cut(s)	622
FaeI	CATG	4 cut(s)	273, 296, 421, 581
FaiI	YATR	6 cut(s)	138, 271, 294, 419, 521, 579
FaqI	GGGAC	2 cut(s)	618, 713
FatI	CATG	4 cut(s)	269, 292, 417, 577
FbaI	TGATCA	1 cut(s)	538
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	548, 716
FokI	GGATG	3 cut(s)	235, 362, 645
FriOI	GRGCYC	1 cut(s)	622
Fsp4HI	GCNGC	2 cut(s)	548, 716
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	2 cut(s)	548, 716
HaeIII	GGCC	3 cut(s)	249, 651, 671
HapII	CCGG	2 cut(s)	60, 206
Hin1II	CATG	4 cut(s)	273, 296, 421, 581
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	4 cut(s)	126, 211, 388, 567
HpaII	CCGG	2 cut(s)	60, 206
HphI	GGTGA	3 cut(s)	40, 451, 623
Hpy166II	GTNNAC	3 cut(s)	298, 415, 643
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	7 cut(s)	60, 109, 259, 465, 504, 560, 665
Hpy8I	GTNNAC	3 cut(s)	298, 415, 643
Hpy99I	CGWCG	6 cut(s)	28, 121, 187, 190, 193, 233
HpyAV	CCTTC	1 cut(s)	631
HpyCH4III	ACNGT	2 cut(s)	28, 526
HpyCH4V	TGCA	4 cut(s)	160, 329, 547, 718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	688
HpyF3I	CTNAG	2 cut(s)	177, 447
Hsp92II	CATG	4 cut(s)	273, 296, 421, 581
Kpn2I	TCCGGA	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	538, 685
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	2 cut(s)	559, 702
LweI	GCATC	2 cut(s)	316, 365
MabI	ACCWGGT	1 cut(s)	511
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	2 cut(s)	540, 687
MboI	GATC	2 cut(s)	538, 685
MboII	GAAGA	7 cut(s)	12, 30, 33, 36, 245, 248, 397
MfeI	CAATTG	2 cut(s)	363, 542
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	5 cut(s)	142, 339, 363, 542, 555
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	6 cut(s)	67, 146, 406, 489, 661, 672
MroI	TCCGGA	1 cut(s)	59
MseI	TTAA	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	715
MspI	CCGG	2 cut(s)	60, 206
MspR9I	CCNGG	2 cut(s)	313, 513
MunI	CAATTG	2 cut(s)	363, 542
Mva1269I	GAATGC	3 cut(s)	448, 499, 597
MvaI	CCWGG	2 cut(s)	313, 513
MwoI	GCNNNNNNNGC	1 cut(s)	688
NdeII	GATC	2 cut(s)	538, 685
NlaIII	CATG	4 cut(s)	273, 296, 421, 581
NspI	RCATGY	1 cut(s)	581
NspV	TTCGAA	1 cut(s)	146
OliI	CACNNNNGTG	1 cut(s)	378
PaeI	GCATGC	1 cut(s)	581
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PctI	GAATGC	3 cut(s)	448, 499, 597
PfeI	GAWTC	3 cut(s)	211, 388, 567
PkrI	GCNGC	2 cut(s)	549, 717
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp124BI	GAGCTC	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	311, 511
PspGI	CCWGG	2 cut(s)	311, 511
PspPI	GGNCC	3 cut(s)	248, 650, 670
PvuII	CAGCTG	1 cut(s)	715
RsaI	GTAC	3 cut(s)	123, 491, 644
RsaNI	GTAC	3 cut(s)	122, 490, 643
RseI	CAYNNNNRTG	1 cut(s)	378
SacI	GAGCTC	1 cut(s)	622
SalI	GTCGAC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	2 cut(s)	548, 716
Sau3AI	GATC	2 cut(s)	538, 685
Sau96I	GGNCC	3 cut(s)	248, 650, 670
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	2 cut(s)	313, 513
SduI	GDGCHC	1 cut(s)	622
SexAI	ACCWGGT	1 cut(s)	511
SfaNI	GCATC	2 cut(s)	316, 365
SfuI	TTCGAA	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	378
SphI	GCATGC	1 cut(s)	581
Sse9I	AATT	5 cut(s)	142, 339, 363, 542, 555
SsiI	CCGC	2 cut(s)	5, 680
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	622
StyD4I	CCNGG	2 cut(s)	311, 511
TaaI	ACNGT	2 cut(s)	28, 526
TaqI	TCGA	6 cut(s)	23, 110, 146, 228, 359, 414
TasI	AATT	5 cut(s)	142, 339, 363, 542, 555
TatI	WGTACW	2 cut(s)	489, 642
TfiI	GAWTC	3 cut(s)	211, 388, 567
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TseI	GCWGC	2 cut(s)	547, 715
TspGWI	ACGGA	4 cut(s)	37, 69, 317, 368
XapI	RAATTY	3 cut(s)	142, 339, 555
XceI	RCATGY	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.