Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0016014

Physical Location & Seq

Genomic Coordinates Forward (+)

20256225 .. 20260262

Gene Structure 4038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTCCGTACTCTCGCTCGCAGCTTCATCTTCTTCTTCCTTGCTCTCATTCTCCTCCACTTGCTCTTCTTCCCCAAAACCCCCATTCTCCTCCTCTGCAAAACCCGCCCTTAAAACCCCATTTGTCGGGTTCTCGGTGGCGCCACCGCAAAAGCTCTGGTTTCCCTCCACCACCGACCTGAGCTTCAACAATGAGGGAAACACACGGCGGAGCTTCGAGATCTTCAGCAGCAAGACTGAGGACTTCGTTCGGGTCCCTTTGGATCAGCGATGGATGTATGAAGACTACGAAGTCGACGGCCCTGACATTTGGAATAATACATGGTATCCAAAAGCTGCAGACCACGTGAATACTGACAAACCGTGGTTTATCGTTGATGCCACAGACAAGATTCTTGGACGAATGGCATCCACAATTGCCATTTACATCCGCGGGAAAATTTTGGCAACCTACACCCCCAGTGTGGACATGGGGGCATTTGTCATTGTGGTAAATGCTGAAAAGGTTGCCGTATCTGGCAAGAAAAGGAACCAAAAACTCTACAGGAGGCATTCTGGACGACCAGGTGGTATGACAGTGGAAACGTTTGACCAGTTACAGCAGAGATCGATCCCAGAGAGGATTATTGAACATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGGAGAGCGCTTTTCAACCACCTAAAGGTGTACAAGGGGCCAGATCATCCCCTTGAAGCCCAGATGCCAGTGGAGCTGCCGATAAGGGACAAAAGAATACAGATACAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

260

Amino Acids

29.12

Weight (kDa)

9.68

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	121 - 239	2.2e-41	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78630
fragaria_vesca	FvH4_3g17780
malus_domestica	MD03G1248000.v1.1
prunus_persica	Prupe.4G156900_v2.0.a1
pyrus_communis	pycom03g19670 pycom11g23810
rosa_chinensis	RchiOBHm_Chr5g0029571
rosa_laevigata	RLG00000033180
rosa_multiflora	Rmu_sc0001608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050370
rosa_samantha	Rh5AG207200 Rh5BG205900 Rh5CG228100 Rh5DG209700
rosa_wichuraiana	Rw5G018850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	1 cut(s)	432
AciI	CCGC	5 cut(s)	105, 146, 208, 430, 432
AclI	AACGTT	1 cut(s)	584
AclWI	GGATC	2 cut(s)	270, 604
AcsI	RAATTY	1 cut(s)	438
AcuI	CTGAAG	1 cut(s)	208
AcvI	CACGTG	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	9, 698
AfeI	AGCGCT	1 cut(s)	675
AfiI	CCNNNNNNNGG	3 cut(s)	125, 463, 691
AgsI	TTSAA	4 cut(s)	187, 629, 682, 722
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	6 cut(s)	23, 154, 183, 213, 335, 742
AluI	AGCT	6 cut(s)	23, 154, 183, 213, 335, 742
AlwI	GGATC	2 cut(s)	270, 604
Aor51HI	AGCGCT	1 cut(s)	675
AoxI	GGCC	2 cut(s)	298, 704
ApeKI	GCWGC	4 cut(s)	20, 228, 335, 742
ApoI	RAATTY	1 cut(s)	438
AspLEI	GCGC	2 cut(s)	142, 676
AspS9I	GGNCC	3 cut(s)	253, 299, 704
AvaII	GGWCC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	139
BbrPI	CACGTG	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	4 cut(s)	32, 240, 322, 729
BccI	CCATC	1 cut(s)	264
BceAI	ACGGC	3 cut(s)	221, 313, 494
BciT130I	CCWGG	1 cut(s)	564
BciVI	GTATCC	1 cut(s)	336
BfmI	CTRYAG	2 cut(s)	336, 541
BfoI	RGCGCY	2 cut(s)	143, 677
BfuI	GTATCC	1 cut(s)	336
BglII	AGATCT	1 cut(s)	219
BisI	GCNGC	4 cut(s)	21, 229, 336, 743
BlsI	GCNGC	4 cut(s)	22, 230, 337, 744
Bme1390I	CCNGG	1 cut(s)	564
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	3 cut(s)	253, 299, 704
BmiI	GGNNCC	5 cut(s)	141, 254, 255, 530, 705
BmrFI	CCNGG	1 cut(s)	564
BmrI	ACTGGG	1 cut(s)	453
BmsI	GCATC	3 cut(s)	367, 416, 720
BmuI	ACTGGG	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	608
BsaAI	YACGTR	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	362, 430
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 463, 691
Bse1I	ACTGG	3 cut(s)	459, 592, 734
BseBI	CCWGG	1 cut(s)	564
BseCI	ATCGAT	1 cut(s)	608
BseDI	CCNNGG	2 cut(s)	362, 430
BseGI	GGATG	4 cut(s)	279, 407, 426, 712
BseLI	CCNNNNNNNGG	3 cut(s)	125, 463, 691
BseMII	CTCAG	2 cut(s)	170, 228
BseNI	ACTGG	3 cut(s)	459, 592, 734
BseRI	GAGGAG	3 cut(s)	43, 79, 82
BseXI	GCAGC	4 cut(s)	32, 240, 322, 729
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	300, 706
BshNI	GGYRCC	1 cut(s)	139
BshVI	ATCGAT	1 cut(s)	608
BslFI	GGGAC	2 cut(s)	239, 767
BslI	CCNNNNNNNGG	3 cut(s)	125, 463, 691
BsmFI	GGGAC	2 cut(s)	239, 767
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	2 cut(s)	300, 706
Bsp1407I	TGTACA	1 cut(s)	696
Bsp143I	GATC	5 cut(s)	219, 262, 605, 609, 709
BspACI	CCGC	5 cut(s)	105, 146, 208, 430, 432
BspANI	GGCC	2 cut(s)	300, 706
BspCNI	CTCAG	2 cut(s)	171, 229
BspDI	ATCGAT	1 cut(s)	608
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	5 cut(s)	141, 254, 255, 530, 705
BspMAI	CTGCAG	1 cut(s)	340
BspPI	GGATC	2 cut(s)	270, 604
BspQI	GCTCTTC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	139
BsrGI	TGTACA	1 cut(s)	696
BsrI	ACTGG	3 cut(s)	459, 592, 734
BssECI	CCNNGG	2 cut(s)	362, 430
BssMI	GATC	5 cut(s)	219, 262, 605, 609, 709
BssNI	GRCGYC	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	363, 577
Bst6I	CTCTTC	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	140
BstAUI	TGTACA	1 cut(s)	696
BstBAI	YACGTR	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	179, 237
BstDSI	CCRYGG	2 cut(s)	362, 430
BstF5I	GGATG	4 cut(s)	279, 407, 426, 712
BstFNI	CGCG	1 cut(s)	432
BstH2I	RGCGCY	2 cut(s)	143, 677
BstHHI	GCGC	2 cut(s)	142, 676
BstKTI	GATC	5 cut(s)	222, 265, 608, 612, 712
BstMBI	GATC	5 cut(s)	219, 262, 605, 609, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 739
BstNI	CCWGG	1 cut(s)	564
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	562
BstSFI	CTRYAG	2 cut(s)	336, 541
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	4 cut(s)	32, 240, 322, 729
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
Bsu15I	ATCGAT	1 cut(s)	608
BsuI	GTATCC	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	300, 706
BsuTUI	ATCGAT	1 cut(s)	608
BtgI	CCRYGG	2 cut(s)	362, 430
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	4 cut(s)	279, 407, 426, 712
BtsIMutI	CAGTG	3 cut(s)	466, 582, 741
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	2 cut(s)	142, 676
Cfr13I	GGNCC	3 cut(s)	253, 299, 704
Cfr42I	CCGCGG	1 cut(s)	433
ClaI	ATCGAT	1 cut(s)	608
CsiI	ACCWGGT	1 cut(s)	562
Csp6I	GTAC	2 cut(s)	8, 697
CviAII	CATG	3 cut(s)	321, 469, 632
CviQI	GTAC	2 cut(s)	8, 697
DdeI	CTNAG	2 cut(s)	179, 237
DinI	GGCGCC	1 cut(s)	141
DpnI	GATC	5 cut(s)	221, 264, 607, 611, 711
DpnII	GATC	5 cut(s)	219, 262, 605, 609, 709
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	253
Eco47III	AGCGCT	1 cut(s)	675
Eco57I	CTGAAG	1 cut(s)	208
Eco72I	CACGTG	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	562
EgeI	GGCGCC	1 cut(s)	141
EheI	GGCGCC	1 cut(s)	141
FaeI	CATG	3 cut(s)	324, 472, 635
FaiI	YATR	6 cut(s)	279, 322, 470, 572, 633, 647
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FaqI	GGGAC	2 cut(s)	239, 767
FatI	CATG	3 cut(s)	320, 468, 631
FauI	CCCGC	2 cut(s)	112, 425
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	4 cut(s)	21, 229, 336, 743
FokI	GGATG	4 cut(s)	286, 394, 413, 699
Fsp4HI	GCNGC	4 cut(s)	21, 229, 336, 743
GlaI	GCGC	2 cut(s)	141, 675
GluI	GCNGC	4 cut(s)	21, 229, 336, 743
HaeII	RGCGCY	2 cut(s)	143, 677
HaeIII	GGCC	2 cut(s)	300, 706
HhaI	GCGC	2 cut(s)	142, 676
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	3 cut(s)	324, 472, 635
Hin6I	GCGC	2 cut(s)	140, 674
HinP1I	GCGC	2 cut(s)	140, 674
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	391
Hpy166II	GTNNAC	3 cut(s)	295, 466, 697
Hpy188III	TCNNGA	2 cut(s)	217, 555
Hpy8I	GTNNAC	3 cut(s)	295, 466, 697
Hpy99I	CGWCG	1 cut(s)	299
HpyCH4III	ACNGT	2 cut(s)	363, 577
HpyCH4IV	ACGT	2 cut(s)	345, 584
HpyCH4V	TGCA	2 cut(s)	98, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 739
HpyF3I	CTNAG	2 cut(s)	179, 237
HpySE526I	ACGT	2 cut(s)	345, 584
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	324, 472, 635
HspAI	GCGC	2 cut(s)	140, 674
KasI	GGCGCC	1 cut(s)	139
KflI	GGGWCCC	1 cut(s)	253
KspI	CCGCGG	1 cut(s)	433
Kzo9I	GATC	5 cut(s)	219, 262, 605, 609, 709
LguI	GCTCTTC	1 cut(s)	70
LmnI	GCTCC	2 cut(s)	210, 739
Lsp1109I	GCAGC	4 cut(s)	32, 240, 322, 729
LweI	GCATC	3 cut(s)	367, 416, 720
MabI	ACCWGGT	1 cut(s)	562
MaeII	ACGT	2 cut(s)	345, 584
MaeIII	GTNAC	1 cut(s)	594
MalI	GATC	5 cut(s)	221, 264, 607, 611, 711
MboI	GATC	5 cut(s)	219, 262, 605, 609, 709
MboII	GAAGA	7 cut(s)	21, 24, 27, 57, 60, 214, 293
MfeI	CAATTG	1 cut(s)	414
MflI	RGATCY	1 cut(s)	219
MluCI	AATT	2 cut(s)	414, 438
Mly113I	GGCGCC	1 cut(s)	140
MnlI	CCTC	9 cut(s)	64, 100, 103, 175, 187, 232, 540, 612, 654
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	564
MunI	CAATTG	1 cut(s)	414
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	2 cut(s)	104, 739
NarI	GGCGCC	1 cut(s)	140
NdeII	GATC	5 cut(s)	219, 262, 605, 609, 709
NlaIII	CATG	3 cut(s)	324, 472, 635
NlaIV	GGNNCC	5 cut(s)	141, 254, 255, 530, 705
NspI	RCATGY	1 cut(s)	635
PciSI	GCTCTTC	1 cut(s)	70
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	4 cut(s)	22, 230, 337, 744
PluTI	GGCGCC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	346
PmlI	CACGTG	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	253
Psp1406I	AACGTT	1 cut(s)	584
Psp5II	RGGWCCY	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	562
PspCI	CACGTG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	5 cut(s)	141, 254, 255, 530, 705
PspPI	GGNCC	3 cut(s)	253, 299, 704
PspPPI	RGGWCCY	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	219
RsaI	GTAC	2 cut(s)	9, 698
RsaNI	GTAC	2 cut(s)	8, 697
SacII	CCGCGG	1 cut(s)	433
SalI	GTCGAC	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	4 cut(s)	21, 229, 336, 743
Sau3AI	GATC	5 cut(s)	219, 262, 605, 609, 709
Sau96I	GGNCC	3 cut(s)	253, 299, 704
ScrFI	CCNGG	1 cut(s)	564
SexAI	ACCWGGT	1 cut(s)	562
SfaNI	GCATC	3 cut(s)	367, 416, 720
SfcI	CTRYAG	2 cut(s)	336, 541
SfoI	GGCGCC	1 cut(s)	141
Sfr303I	CCGCGG	1 cut(s)	433
SgrBI	CCGCGG	1 cut(s)	433
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	2 cut(s)	414, 438
SsiI	CCGC	5 cut(s)	105, 146, 208, 430, 432
SspDI	GGCGCC	1 cut(s)	139
StyD4I	CCNGG	1 cut(s)	562
TaaI	ACNGT	2 cut(s)	363, 577
TaiI	ACGT	2 cut(s)	348, 587
TaqI	TCGA	3 cut(s)	216, 294, 608
TasI	AATT	2 cut(s)	414, 438
TatI	WGTACW	1 cut(s)	696
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	3 cut(s)	466, 582, 741
TseI	GCWGC	4 cut(s)	20, 228, 335, 742
TspDTI	ATGAA	2 cut(s)	15, 294
TspRI	CASTG	3 cut(s)	466, 582, 741
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	438
XceI	RCATGY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.