Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016014

Physical Location & Seq

Genomic Coordinates Forward (+)

11309130 .. 11312542

Gene Structure 3413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17780.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCTGTCTTTTCACTCTCAGCTTCATCCTCTTCCTTCATCTTCTCATCCTCCTCTACTTGTTCTTCTTCCACCAAACCCCCCTTTCCATCTTCCTCTTCTTCTTCTTCAAAGACCCTTAACAAAACCCCCTTCGTTGGTCTCTCTGCGGCCCAATCCCAAAAGCTATGGCTTCCCACAACAAGCTCTCTTACTTTTGGCAATGAAGGCGGTTCGAGACGGAGCTTTGAGGTTCACAGCACGCAGGAAATGACCAGGGTGCCCTTGGATGAACGCTGGATGTGGGAGGAGGATGAAGTTGATGGCATTGATATTTGGAATAAGACATGGTACCCAAAAGCTGCAGATCATGTGAATACTGACAAACCATGGTATATCGTTGATGCCACAGACAAGATTCTTGGAAGACTAGCATCTACAATCGCCATTTACATCCGCGGCAAAAATCTAGCTACCTATACACCCAGTGTTGACATGGGGGCATTTGTCATTGTGGTAAATGCAGACAAGGTTGCTGTATCTGGCAAGAAAAGAAACCAAAAGCTCTATAGGAGGCATTCTGGACGACCAGGTGGTATGACAGTGGAAACGTTTGACCAGTTACAGCAGAGAATACCAGAGCGAATTATTGAACATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGTAGGCAACTTTTCAACCACCTGAAGGTTTACAAGGGTCCAGACCACCCACATGAAGCCCAGAAGCCATTGGATCTGCCTATCAGAGACAAGAGAATAATGATACAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

261

Amino Acids

29.18

Weight (kDa)

9.78

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	123 - 166	9.6e-14	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78630
fragaria_vesca	FvH4_3g17780
malus_domestica	MD03G1248000.v1.1
prunus_persica	Prupe.4G156900_v2.0.a1
pyrus_communis	pycom03g19670 pycom11g23810
rosa_chinensis	RchiOBHm_Chr5g0029571
rosa_laevigata	RLG00000033180
rosa_multiflora	Rmu_sc0001608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050370
rosa_samantha	Rh5AG207200 Rh5BG205900 Rh5CG228100 Rh5DG209700
rosa_wichuraiana	Rw5G018850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	330
AccB1I	GGYRCC	2 cut(s)	259, 330
AccII	CGCG	1 cut(s)	438
AciI	CCGC	4 cut(s)	149, 210, 436, 438
AclI	AACGTT	1 cut(s)	590
AclWI	GGATC	1 cut(s)	750
AcuI	CTGAAG	1 cut(s)	713
AdeI	CACNNNGTG	1 cut(s)	467
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	137, 694
AgsI	TTSAA	3 cut(s)	111, 632, 685
AjnI	CCWGG	2 cut(s)	254, 568
AluBI	AGCT	7 cut(s)	23, 166, 186, 225, 341, 452, 544
AluI	AGCT	7 cut(s)	23, 166, 186, 225, 341, 452, 544
Alw26I	GTCTC	3 cut(s)	146, 211, 750
AlwI	GGATC	1 cut(s)	750
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	341
Asp718I	GGTACC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	151, 707
AvaII	GGWCC	1 cut(s)	707
BaeGI	GKGCMC	1 cut(s)	264
BanI	GGYRCC	2 cut(s)	259, 330
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	2 cut(s)	97, 296
BciT130I	CCWGG	2 cut(s)	256, 570
BcoDI	GTCTC	3 cut(s)	146, 211, 750
BfaI	CTAG	2 cut(s)	410, 449
BfmI	CTRYAG	2 cut(s)	342, 547
BisI	GCNGC	3 cut(s)	150, 342, 439
BlsI	GCNGC	3 cut(s)	151, 343, 440
Bme1390I	CCNGG	2 cut(s)	256, 570
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	151, 707
BmiI	GGNNCC	3 cut(s)	261, 332, 708
BmrFI	CCNGG	2 cut(s)	256, 570
BmrI	ACTGGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	373, 422
BmuI	ACTGGG	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	4 cut(s)	255, 264, 368, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 694
Bse1I	ACTGG	2 cut(s)	465, 598
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	2 cut(s)	256, 570
BseDI	CCNNGG	4 cut(s)	255, 264, 368, 436
BseGI	GGATG	6 cut(s)	26, 47, 274, 285, 298, 432
BseLI	CCNNNNNNNGG	2 cut(s)	137, 694
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	465, 598
BseRI	GAGGAG	2 cut(s)	43, 302
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	2 cut(s)	259, 330
BslI	CCNNNNNNNGG	2 cut(s)	137, 694
BsmAI	GTCTC	3 cut(s)	146, 211, 750
BsmBI	CGTCTC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	1 cut(s)	152
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	346, 742
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	4 cut(s)	149, 210, 436, 438
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	32
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	3 cut(s)	261, 332, 708
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	750
BspT107I	GGYRCC	2 cut(s)	259, 330
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	465, 598
BssECI	CCNNGG	4 cut(s)	255, 264, 368, 436
BssMI	GATC	2 cut(s)	346, 742
BssT1I	CCWWGG	2 cut(s)	264, 368
Bst2UI	CCWGG	2 cut(s)	256, 570
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	2 cut(s)	37, 103
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	19
BstDSI	CCRYGG	2 cut(s)	368, 436
BstF5I	GGATG	6 cut(s)	26, 47, 274, 285, 298, 432
BstFNI	CGCG	1 cut(s)	438
BstKTI	GATC	2 cut(s)	349, 745
BstMAI	GTCTC	3 cut(s)	146, 211, 750
BstMBI	GATC	2 cut(s)	346, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 673
BstNI	CCWGG	2 cut(s)	256, 570
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	2 cut(s)	254, 568
BstSFI	CTRYAG	2 cut(s)	342, 547
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	328
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	2 cut(s)	368, 436
BtsCI	GGATG	6 cut(s)	26, 47, 274, 285, 298, 432
BtsIMutI	CAGTG	2 cut(s)	472, 588
Cac8I	GCNNGC	1 cut(s)	242
Cfr13I	GGNCC	2 cut(s)	151, 707
Cfr42I	CCGCGG	1 cut(s)	439
CsiI	ACCWGGT	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	6 cut(s)	327, 350, 369, 475, 635, 722
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	2 cut(s)	348, 744
DpnII	GATC	2 cut(s)	346, 742
DraIII	CACNNNGTG	1 cut(s)	467
Eam1104I	CTCTTC	2 cut(s)	37, 103
EarI	CTCTTC	2 cut(s)	37, 103
Eco130I	CCWWGG	2 cut(s)	264, 368
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	713
EcoRII	CCWGG	2 cut(s)	254, 568
EcoT14I	CCWWGG	2 cut(s)	264, 368
ErhI	CCWWGG	2 cut(s)	264, 368
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	6 cut(s)	330, 353, 372, 478, 638, 725
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FatI	CATG	6 cut(s)	326, 349, 368, 474, 634, 721
Fnu4HI	GCNGC	3 cut(s)	150, 342, 439
FokI	GGATG	6 cut(s)	13, 34, 281, 292, 305, 419
Fsp4HI	GCNGC	3 cut(s)	150, 342, 439
FspBI	CTAG	2 cut(s)	410, 449
GluI	GCNGC	3 cut(s)	150, 342, 439
HaeIII	GGCC	1 cut(s)	152
Hin1II	CATG	6 cut(s)	330, 353, 372, 478, 638, 725
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	1 cut(s)	397
Hpy166II	GTNNAC	3 cut(s)	235, 472, 700
Hpy188I	TCNGA	1 cut(s)	755
Hpy188III	TCNNGA	3 cut(s)	216, 561, 710
Hpy8I	GTNNAC	3 cut(s)	235, 472, 700
HpyAV	CCTTC	4 cut(s)	46, 142, 200, 688
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	2 cut(s)	344, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 673
HpyF3I	CTNAG	1 cut(s)	19
HpySE526I	ACGT	1 cut(s)	590
Hsp92II	CATG	6 cut(s)	330, 353, 372, 478, 638, 725
KpnI	GGTACC	1 cut(s)	334
KspI	CCGCGG	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	346, 742
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	2 cut(s)	373, 422
MabI	ACCWGGT	1 cut(s)	568
MaeI	CTAG	2 cut(s)	410, 449
MaeII	ACGT	1 cut(s)	590
MaeIII	GTNAC	1 cut(s)	600
MalI	GATC	2 cut(s)	348, 744
MboI	GATC	2 cut(s)	346, 742
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	1 cut(s)	624
MnlI	CCTC	9 cut(s)	40, 61, 64, 106, 223, 280, 283, 546, 657
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	438
MspR9I	CCNGG	2 cut(s)	256, 570
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	2 cut(s)	256, 570
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	2 cut(s)	207, 673
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	2 cut(s)	346, 742
NlaIII	CATG	6 cut(s)	330, 353, 372, 478, 638, 725
NlaIV	GGNNCC	3 cut(s)	261, 332, 708
NspI	RCATGY	1 cut(s)	638
PctI	GAATGC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	3 cut(s)	151, 343, 440
Psp1406I	AACGTT	1 cut(s)	590
Psp6I	CCWGG	2 cut(s)	254, 568
PspGI	CCWGG	2 cut(s)	254, 568
PspN4I	GGNNCC	3 cut(s)	261, 332, 708
PspPI	GGNCC	2 cut(s)	151, 707
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	742
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	720
SacII	CCGCGG	1 cut(s)	439
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	3 cut(s)	150, 342, 439
Sau3AI	GATC	2 cut(s)	346, 742
Sau96I	GGNCC	2 cut(s)	151, 707
ScrFI	CCNGG	2 cut(s)	256, 570
SduI	GDGCHC	1 cut(s)	264
SexAI	ACCWGGT	1 cut(s)	568
SfaNI	GCATC	2 cut(s)	373, 422
SfcI	CTRYAG	2 cut(s)	342, 547
Sfr303I	CCGCGG	1 cut(s)	439
SgrBI	CCGCGG	1 cut(s)	439
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	720
Sse9I	AATT	1 cut(s)	624
SsiI	CCGC	4 cut(s)	149, 210, 436, 438
SspMI	CTAG	2 cut(s)	410, 449
StyD4I	CCNGG	2 cut(s)	254, 568
StyI	CCWWGG	2 cut(s)	264, 368
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	1 cut(s)	215
TasI	AATT	1 cut(s)	624
TauI	GCSGC	2 cut(s)	152, 441
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	2 cut(s)	472, 588
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	6 cut(s)	15, 28, 219, 285, 309, 738
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	2 cut(s)	472, 588
VpaK11BI	GGWCC	1 cut(s)	707
XceI	RCATGY	1 cut(s)	638
XcmI	CCANNNNNNNNNTGG	2 cut(s)	262, 472
XspI	CTAG	2 cut(s)	410, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.