Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016014

Physical Location & Seq

Genomic Coordinates Forward (+)

23283495 .. 23285945

Gene Structure 2451 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG228100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCTGTATTTTCACTCTCAGCTTCATCCTCTTCCTTCATCTTCTCATCCTCCTCTACTTGTTCCTCTTCAACCAAACCCCCTTTTCCATCTTCCTCTCCTTCTTCTTCAAAGACCGCTAACAAAACCCCCTTCATTGGGCTCTCTGCGGCCCAATCCCAAAAGCTTTGGATTCCCACCACAAGCTCTCTTACTTTTAGCAGTGAAGGCAGTTCGAGACGGAGCTTTGAGGTTCACAGCACAAAGGAAATTACCCGCGTGCCCTTGGATGAACGCTGGATGTGGGAGGAGGACGAAGTCGAAGGCATTGATATTTGGAATAAGACATGGTACCCAAAAGCTGCAGATCATGTGAATACTGAGAAACCATGGTATATTGTTGATGCCACAGACAAGATTCTTGGAAGACTAGCATCCACAATCGCCATTTACATCCGCGGCAAAAATCTGGCAACCTATACACCCAGTGTTGACATGGGGGCATTTGTCATTGTGGTAAATGCAGAAAAGGTTGCTGTATCTGGCAAGAAAAGAAACCAAAAGCTCTATAGAAGGCATTCTGGTCGACCAGGTGGTATGACAGTGGAAACATTTGACCAGTTACAGCAGAGAATACCAGAGAGAATTGTTGAACATGCTGTTCGTGGAATGCTTCCAAAGGGGAGGCTTGGTAGGGCACTTTTCAACCACCTGAAGGTTTACAAGGGCCCAGACCACCCACATGAAGCCCAGAAGCCATTGGATCTGCCTATAAGGGACAAGAGAATACAGATACGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

260

Amino Acids

29.18

Weight (kDa)

9.89

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	123 - 240	5.6e-44	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78630
fragaria_vesca	FvH4_3g17780
malus_domestica	MD03G1248000.v1.1
prunus_persica	Prupe.4G156900_v2.0.a1
pyrus_communis	pycom03g19670 pycom11g23810
rosa_chinensis	RchiOBHm_Chr5g0029571
rosa_laevigata	RLG00000033180
rosa_multiflora	Rmu_sc0001608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050370
rosa_samantha	Rh5AG207200 Rh5BG205900 Rh5CG228100 Rh5DG209700
rosa_wichuraiana	Rw5G018850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	330
AccB1I	GGYRCC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	565
AccII	CGCG	2 cut(s)	258, 438
AciI	CCGC	5 cut(s)	117, 149, 256, 436, 438
AclWI	GGATC	1 cut(s)	750
AcuI	CTGAAG	1 cut(s)	713
AdeI	CACNNNGTG	1 cut(s)	467
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	3 cut(s)	137, 138, 694
AgsI	TTSAA	4 cut(s)	72, 111, 632, 685
AjnI	CCWGG	1 cut(s)	568
AluBI	AGCT	6 cut(s)	23, 166, 186, 225, 341, 544
AluI	AGCT	6 cut(s)	23, 166, 186, 225, 341, 544
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	750
AoxI	GGCC	2 cut(s)	150, 706
ApaI	GGGCCC	1 cut(s)	710
ApeKI	GCWGC	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	556
Asp718I	GGTACC	1 cut(s)	330
AspS9I	GGNCC	3 cut(s)	151, 706, 707
BaeGI	GKGCMC	3 cut(s)	264, 679, 710
BanI	GGYRCC	1 cut(s)	330
BanII	GRGCYC	2 cut(s)	144, 710
BbsI	GAAGAC	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	545, 579
BciT130I	CCWGG	1 cut(s)	570
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	2 cut(s)	342, 547
BisI	GCNGC	3 cut(s)	150, 342, 439
BlsI	GCNGC	3 cut(s)	151, 343, 440
Bme1390I	CCNGG	1 cut(s)	570
BmgT120I	GGNCC	3 cut(s)	151, 706, 707
BmiI	GGNNCC	2 cut(s)	332, 708
BmrFI	CCNGG	1 cut(s)	570
BmrI	ACTGGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	373, 422
BmuI	ACTGGG	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	264, 368, 436
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 138, 694
Bse1I	ACTGG	2 cut(s)	465, 598
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	3 cut(s)	264, 368, 436
BseGI	GGATG	6 cut(s)	26, 47, 274, 285, 413, 432
BseLI	CCNNNNNNNGG	3 cut(s)	137, 138, 694
BseMII	CTCAG	2 cut(s)	33, 351
BseNI	ACTGG	2 cut(s)	465, 598
BseRI	GAGGAG	2 cut(s)	43, 302
BseSI	GKGCMC	3 cut(s)	264, 679, 710
BseXI	GCAGC	1 cut(s)	328
Bsh1236I	CGCG	2 cut(s)	258, 438
BshFI	GGCC	2 cut(s)	152, 708
BshNI	GGYRCC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	3 cut(s)	137, 138, 694
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	770
BsmI	GAATGC	2 cut(s)	556, 654
BsnI	GGCC	2 cut(s)	152, 708
Bsp120I	GGGCCC	1 cut(s)	706
Bsp1286I	GDGCHC	4 cut(s)	144, 264, 679, 710
Bsp143I	GATC	2 cut(s)	346, 742
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	5 cut(s)	117, 149, 256, 436, 438
BspANI	GGCC	2 cut(s)	152, 708
BspCNI	CTCAG	2 cut(s)	32, 352
BspFNI	CGCG	2 cut(s)	258, 438
BspLI	GGNNCC	2 cut(s)	332, 708
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	750
BspT107I	GGYRCC	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	465, 598
BssECI	CCNNGG	3 cut(s)	264, 368, 436
BssMI	GATC	2 cut(s)	346, 742
BssT1I	CCWWGG	2 cut(s)	264, 368
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	2 cut(s)	37, 73
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	19, 360
BstDSI	CCRYGG	2 cut(s)	368, 436
BstF5I	GGATG	6 cut(s)	26, 47, 274, 285, 413, 432
BstFNI	CGCG	2 cut(s)	258, 438
BstKTI	GATC	2 cut(s)	349, 745
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	346, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	568
BstSFI	CTRYAG	2 cut(s)	342, 547
BstSLI	GKGCMC	3 cut(s)	264, 679, 710
BstUI	CGCG	2 cut(s)	258, 438
BstV1I	GCAGC	1 cut(s)	328
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	742
BstYI	RGATCY	1 cut(s)	742
BsuRI	GGCC	2 cut(s)	152, 708
BtgI	CCRYGG	2 cut(s)	368, 436
BtsCI	GGATG	6 cut(s)	26, 47, 274, 285, 413, 432
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	3 cut(s)	208, 472, 588
Cac8I	GCNNGC	1 cut(s)	260
Cfr13I	GGNCC	3 cut(s)	151, 706, 707
Cfr42I	CCGCGG	1 cut(s)	439
CsiI	ACCWGGT	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	6 cut(s)	327, 350, 369, 475, 635, 722
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	2 cut(s)	19, 360
DpnI	GATC	2 cut(s)	348, 744
DpnII	GATC	2 cut(s)	346, 742
DraIII	CACNNNGTG	1 cut(s)	467
Eam1104I	CTCTTC	2 cut(s)	37, 73
EarI	CTCTTC	2 cut(s)	37, 73
Eco130I	CCWWGG	2 cut(s)	264, 368
Eco24I	GRGCYC	2 cut(s)	144, 710
Eco57I	CTGAAG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	568
EcoT14I	CCWWGG	2 cut(s)	264, 368
EcoT38I	GRGCYC	2 cut(s)	144, 710
ErhI	CCWWGG	2 cut(s)	264, 368
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	6 cut(s)	330, 353, 372, 478, 638, 725
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	6 cut(s)	326, 349, 368, 474, 634, 721
FauI	CCCGC	1 cut(s)	263
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	3 cut(s)	150, 342, 439
FokI	GGATG	6 cut(s)	13, 34, 281, 292, 400, 419
FriOI	GRGCYC	2 cut(s)	144, 710
Fsp4HI	GCNGC	3 cut(s)	150, 342, 439
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	3 cut(s)	150, 342, 439
HaeIII	GGCC	2 cut(s)	152, 708
Hin1II	CATG	6 cut(s)	330, 353, 372, 478, 638, 725
HincII	GTYRAC	2 cut(s)	472, 566
HindII	GTYRAC	2 cut(s)	472, 566
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	2 cut(s)	172, 397
Hpy166II	GTNNAC	4 cut(s)	235, 472, 566, 700
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	4 cut(s)	235, 472, 566, 700
HpyAV	CCTTC	7 cut(s)	46, 111, 142, 200, 296, 546, 688
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4V	TGCA	2 cut(s)	344, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	2 cut(s)	19, 360
Hsp92II	CATG	6 cut(s)	330, 353, 372, 478, 638, 725
KpnI	GGTACC	1 cut(s)	334
KspI	CCGCGG	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	346, 742
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	2 cut(s)	373, 422
MabI	ACCWGGT	1 cut(s)	568
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	600
MalI	GATC	2 cut(s)	348, 744
MboI	GATC	2 cut(s)	346, 742
MboII	GAAGA	7 cut(s)	24, 34, 60, 84, 96, 99, 417
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	4 cut(s)	144, 264, 679, 710
MluCI	AATT	2 cut(s)	249, 624
MnlI	CCTC	9 cut(s)	40, 61, 64, 76, 106, 223, 280, 283, 657
MroXI	GAANNNNTTC	1 cut(s)	556
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	570
Mva1269I	GAATGC	2 cut(s)	556, 654
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	2 cut(s)	258, 438
MwoI	GCNNNNNNNGC	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	2 cut(s)	346, 742
NlaIII	CATG	6 cut(s)	330, 353, 372, 478, 638, 725
NlaIV	GGNNCC	2 cut(s)	332, 708
NspI	RCATGY	1 cut(s)	638
PctI	GAATGC	2 cut(s)	556, 654
PdmI	GAANNNNTTC	1 cut(s)	556
PfeI	GAWTC	2 cut(s)	172, 397
PflFI	GACNNNGTC	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	151, 343, 440
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	2 cut(s)	332, 708
PspOMI	GGGCCC	1 cut(s)	706
PspPI	GGNCC	3 cut(s)	151, 706, 707
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	742
PsyI	GACNNNGTC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	720
SacII	CCGCGG	1 cut(s)	439
SalI	GTCGAC	1 cut(s)	564
SatI	GCNGC	3 cut(s)	150, 342, 439
Sau3AI	GATC	2 cut(s)	346, 742
Sau96I	GGNCC	3 cut(s)	151, 706, 707
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	4 cut(s)	144, 264, 679, 710
SexAI	ACCWGGT	1 cut(s)	568
SfaNI	GCATC	2 cut(s)	373, 422
SfcI	CTRYAG	2 cut(s)	342, 547
Sfr303I	CCGCGG	1 cut(s)	439
SgrBI	CCGCGG	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	720
Sse9I	AATT	2 cut(s)	249, 624
SsiI	CCGC	5 cut(s)	117, 149, 256, 436, 438
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	568
StyI	CCWWGG	2 cut(s)	264, 368
TaaI	ACNGT	1 cut(s)	583
TaqI	TCGA	3 cut(s)	215, 300, 565
TasI	AATT	2 cut(s)	249, 624
TauI	GCSGC	2 cut(s)	152, 441
TfiI	GAWTC	2 cut(s)	172, 397
TscAI	CASTG	3 cut(s)	208, 472, 588
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	5 cut(s)	15, 28, 124, 285, 738
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	3 cut(s)	208, 472, 588
Tth111I	GACNNNGTC	1 cut(s)	296
XceI	RCATGY	1 cut(s)	638
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XmiI	GTMKAC	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	556
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.