Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0016014

Physical Location & Seq

Genomic Coordinates Forward (+)

33517915 .. 33521556

Gene Structure 3642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1248000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCCGTACTCTCGCTCGCAGCTTCATCTTCTTCTTCCTTGCACTCATCCTCCTCCACTTGCTCTTCAAAACCCCCATTCTCCTCCTCTGCAAAACCCGCCTTTAAAACCCCATTTGTCGGGTACTTGGTGGCGCCACCGCAAAAGCTCTGGTTTCCCTCCACCACCGACCTGAGCTTAAACAGTGAAGGAAACACACGGCGGAGCTTCGAGGTCTTCAGCAGCAAAACTGAGGACTTCGTTCGGGTCCCTTTGGATCAGCGATGGATGTTTGAAGACTACGAAGTCGACGGCCCTGACATTTGGAATAATACATGGTATCCAAAAGCTGCAGACCACGTGAATACTGACAAACCGTGGTTTATCGTTGATGCCACAGACAAGATTCTTGGACGAATGGCATCCACAATTGCCATTTACATCCGCGGGAAAAATTTGGTGACCTACACCCCCAGTGTGGACATGGGAGCATTTGTCATTGTGATAAATGCTGAAAAGGTTGCCGTATCTGGCAAGAAAAGGAACCAAAAACTCTACAGGAGGCATTCTGGACGACCAGGTGGTATGACAGTGGAAACGTTTGACCAGTTACAGCAGAGAATCCCAGAGAGGATTATTGAACATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGGAGAGCGCTTTTCAACCACCTGAAGGTATACAAGGGGCAAGATCATCCCCATGAAGCCCAGATGCCAGTGGAGCTGCCGATAAGGGACAAAAGAATACAGATACAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

257

Amino Acids

28.9

Weight (kDa)

9.68

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	119 - 236	2.8e-44	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78630
fragaria_vesca	FvH4_3g17780
malus_domestica	MD03G1248000.v1.1
prunus_persica	Prupe.4G156900_v2.0.a1
pyrus_communis	pycom03g19670 pycom11g23810
rosa_chinensis	RchiOBHm_Chr5g0029571
rosa_laevigata	RLG00000033180
rosa_multiflora	Rmu_sc0001608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050370
rosa_samantha	Rh5AG207200 Rh5BG205900 Rh5CG228100 Rh5DG209700
rosa_wichuraiana	Rw5G018850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	133
AccI	GTMKAC	2 cut(s)	288, 687
AccII	CGCG	1 cut(s)	426
AciI	CCGC	5 cut(s)	99, 140, 202, 424, 426
AclI	AACGTT	1 cut(s)	578
AclWI	GGATC	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	2 cut(s)	202, 701
AcvI	CACGTG	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	2 cut(s)	9, 125
AfeI	AGCGCT	1 cut(s)	666
AfiI	CCNNNNNNNGG	3 cut(s)	119, 457, 682
AgsI	TTSAA	4 cut(s)	69, 275, 620, 673
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	6 cut(s)	23, 148, 177, 207, 329, 733
AluI	AGCT	6 cut(s)	23, 148, 177, 207, 329, 733
AlwI	GGATC	1 cut(s)	264
Aor51HI	AGCGCT	1 cut(s)	666
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	4 cut(s)	20, 222, 329, 733
ApoI	RAATTY	1 cut(s)	433
AspLEI	GCGC	2 cut(s)	136, 667
AspS9I	GGNCC	2 cut(s)	247, 293
AsuHPI	GGTGA	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	247
BaeI	ACNNNNGTAYC	1 cut(s)	752
BanI	GGYRCC	1 cut(s)	133
BbrPI	CACGTG	1 cut(s)	340
BbsI	GAAGAC	2 cut(s)	208, 282
BbvI	GCAGC	4 cut(s)	32, 234, 316, 720
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	3 cut(s)	215, 307, 488
BciT130I	CCWGG	1 cut(s)	558
BciVI	GTATCC	1 cut(s)	330
BfmI	CTRYAG	2 cut(s)	330, 535
BfoI	RGCGCY	2 cut(s)	137, 668
BfuI	GTATCC	1 cut(s)	330
BisI	GCNGC	4 cut(s)	21, 223, 330, 734
BlsI	GCNGC	4 cut(s)	22, 224, 331, 735
Bme1390I	CCNGG	1 cut(s)	558
Bme18I	GGWCC	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	247, 293
BmiI	GGNNCC	4 cut(s)	135, 248, 249, 524
BmrFI	CCNGG	1 cut(s)	558
BmrI	ACTGGG	1 cut(s)	447
BmsI	GCATC	3 cut(s)	361, 410, 711
BmuI	ACTGGG	1 cut(s)	447
BpiI	GAAGAC	2 cut(s)	208, 282
Bpu10I	CCTNAGC	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	356, 424
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 459, 489
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 457, 682
Bse1I	ACTGG	3 cut(s)	453, 586, 725
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	2 cut(s)	356, 424
BseGI	GGATG	5 cut(s)	47, 273, 401, 420, 703
BseLI	CCNNNNNNNGG	3 cut(s)	119, 457, 682
BseMII	CTCAG	2 cut(s)	164, 222
BseNI	ACTGG	3 cut(s)	453, 586, 725
BseRI	GAGGAG	3 cut(s)	43, 73, 76
BseXI	GCAGC	4 cut(s)	32, 234, 316, 720
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	133
BslFI	GGGAC	2 cut(s)	233, 758
BslI	CCNNNNNNNGG	3 cut(s)	119, 457, 682
BsmFI	GGGAC	2 cut(s)	233, 758
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	256, 700
BspACI	CCGC	5 cut(s)	99, 140, 202, 424, 426
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	2 cut(s)	165, 223
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	4 cut(s)	135, 248, 249, 524
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	264
BspQI	GCTCTTC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	133
BsrI	ACTGG	3 cut(s)	453, 586, 725
BssECI	CCNNGG	2 cut(s)	356, 424
BssMI	GATC	2 cut(s)	256, 700
BssNAI	GTATAC	1 cut(s)	688
BssNI	GRCGYC	1 cut(s)	134
Bst1107I	GTATAC	1 cut(s)	688
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	185, 357, 571
Bst6I	CTCTTC	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	134
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	173, 231
BstDSI	CCRYGG	2 cut(s)	356, 424
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	5 cut(s)	47, 273, 401, 420, 703
BstFNI	CGCG	1 cut(s)	426
BstH2I	RGCGCY	2 cut(s)	137, 668
BstHHI	GCGC	2 cut(s)	136, 667
BstKTI	GATC	2 cut(s)	259, 703
BstMBI	GATC	2 cut(s)	256, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 730
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	626
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	556
BstSFI	CTRYAG	2 cut(s)	330, 535
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	4 cut(s)	32, 234, 316, 720
BstV2I	GAAGAC	2 cut(s)	208, 282
BstZ17I	GTATAC	1 cut(s)	688
BsuI	GTATCC	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	2 cut(s)	356, 424
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	5 cut(s)	47, 273, 401, 420, 703
BtsIMutI	CAGTG	4 cut(s)	190, 460, 576, 732
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	2 cut(s)	136, 667
Cfr13I	GGNCC	2 cut(s)	247, 293
Cfr42I	CCGCGG	1 cut(s)	427
CsiI	ACCWGGT	1 cut(s)	556
Csp6I	GTAC	2 cut(s)	8, 124
CviAII	CATG	4 cut(s)	315, 463, 623, 710
CviJI	RGCY	9 cut(s)	23, 148, 177, 207, 294, 329, 655, 716, 733
CviKI_1	RGCY	9 cut(s)	23, 148, 177, 207, 294, 329, 655, 716, 733
CviQI	GTAC	2 cut(s)	8, 124
DdeI	CTNAG	2 cut(s)	173, 231
DinI	GGCGCC	1 cut(s)	135
DpnI	GATC	2 cut(s)	258, 702
DpnII	GATC	2 cut(s)	256, 700
DraI	TTTAAA	1 cut(s)	106
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	247
Eco47III	AGCGCT	1 cut(s)	666
Eco57I	CTGAAG	2 cut(s)	202, 701
Eco72I	CACGTG	1 cut(s)	340
Eco91I	GGTNACC	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	556
EgeI	GGCGCC	1 cut(s)	135
EheI	GGCGCC	1 cut(s)	135
FaeI	CATG	4 cut(s)	318, 466, 626, 713
FaiI	YATR	7 cut(s)	316, 464, 566, 624, 638, 688, 711
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	2 cut(s)	233, 758
FatI	CATG	4 cut(s)	314, 462, 622, 709
FauI	CCCGC	2 cut(s)	106, 419
FblI	GTMKAC	2 cut(s)	288, 687
Fnu4HI	GCNGC	4 cut(s)	21, 223, 330, 734
FokI	GGATG	5 cut(s)	34, 280, 388, 407, 690
Fsp4HI	GCNGC	4 cut(s)	21, 223, 330, 734
GlaI	GCGC	2 cut(s)	135, 666
GluI	GCNGC	4 cut(s)	21, 223, 330, 734
HaeII	RGCGCY	2 cut(s)	137, 668
HaeIII	GGCC	1 cut(s)	294
HhaI	GCGC	2 cut(s)	136, 667
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	4 cut(s)	318, 466, 626, 713
Hin6I	GCGC	2 cut(s)	134, 665
HinP1I	GCGC	2 cut(s)	134, 665
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	2 cut(s)	385, 600
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	3 cut(s)	289, 460, 688
Hpy188III	TCNNGA	1 cut(s)	549
Hpy8I	GTNNAC	3 cut(s)	289, 460, 688
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	182, 676
HpyCH4III	ACNGT	3 cut(s)	185, 357, 571
HpyCH4IV	ACGT	2 cut(s)	339, 578
HpyCH4V	TGCA	3 cut(s)	43, 92, 332
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 730
HpyF3I	CTNAG	2 cut(s)	173, 231
HpySE526I	ACGT	2 cut(s)	339, 578
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	4 cut(s)	318, 466, 626, 713
HspAI	GCGC	2 cut(s)	134, 665
KasI	GGCGCC	1 cut(s)	133
KflI	GGGWCCC	1 cut(s)	247
KspI	CCGCGG	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	256, 700
LguI	GCTCTTC	1 cut(s)	70
LmnI	GCTCC	3 cut(s)	204, 467, 730
Lsp1109I	GCAGC	4 cut(s)	32, 234, 316, 720
LweI	GCATC	3 cut(s)	361, 410, 711
MabI	ACCWGGT	1 cut(s)	556
MaeII	ACGT	2 cut(s)	339, 578
MaeIII	GTNAC	2 cut(s)	439, 588
MalI	GATC	2 cut(s)	258, 702
MboI	GATC	2 cut(s)	256, 700
MboII	GAAGA	6 cut(s)	21, 24, 27, 57, 208, 287
MfeI	CAATTG	1 cut(s)	408
MluCI	AATT	2 cut(s)	408, 433
Mly113I	GGCGCC	1 cut(s)	134
MseI	TTAA	2 cut(s)	105, 179
MslI	CAYNNNNRTG	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	558
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	2 cut(s)	98, 730
NarI	GGCGCC	1 cut(s)	134
NdeII	GATC	2 cut(s)	256, 700
NlaIII	CATG	4 cut(s)	318, 466, 626, 713
NlaIV	GGNNCC	4 cut(s)	135, 248, 249, 524
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	626
PciSI	GCTCTTC	1 cut(s)	70
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	2 cut(s)	385, 600
PkrI	GCNGC	4 cut(s)	22, 224, 331, 735
PluTI	GGCGCC	1 cut(s)	137
PmaCI	CACGTG	1 cut(s)	340
PmlI	CACGTG	1 cut(s)	340
Ppu21I	YACGTR	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	247
Psp1406I	AACGTT	1 cut(s)	578
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	556
PspCI	CACGTG	1 cut(s)	340
PspEI	GGTNACC	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	4 cut(s)	135, 248, 249, 524
PspPI	GGNCC	2 cut(s)	247, 293
PspPPI	RGGWCCY	1 cut(s)	247
PstI	CTGCAG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	9, 125
RsaNI	GTAC	2 cut(s)	8, 124
RseI	CAYNNNNRTG	1 cut(s)	708
SacII	CCGCGG	1 cut(s)	427
SalI	GTCGAC	1 cut(s)	287
SapI	GCTCTTC	1 cut(s)	70
SaqAI	TTAA	2 cut(s)	105, 179
SatI	GCNGC	4 cut(s)	21, 223, 330, 734
Sau3AI	GATC	2 cut(s)	256, 700
Sau96I	GGNCC	2 cut(s)	247, 293
ScrFI	CCNGG	1 cut(s)	558
SexAI	ACCWGGT	1 cut(s)	556
SfaNI	GCATC	3 cut(s)	361, 410, 711
SfcI	CTRYAG	2 cut(s)	330, 535
SfoI	GGCGCC	1 cut(s)	135
Sfr303I	CCGCGG	1 cut(s)	427
SgrBI	CCGCGG	1 cut(s)	427
SinI	GGWCC	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	708
Sse9I	AATT	2 cut(s)	408, 433
SsiI	CCGC	5 cut(s)	99, 140, 202, 424, 426
SspDI	GGCGCC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	556
TaaI	ACNGT	3 cut(s)	185, 357, 571
TaiI	ACGT	2 cut(s)	342, 581
TaqI	TCGA	2 cut(s)	210, 288
TasI	AATT	2 cut(s)	408, 433
TfiI	GAWTC	2 cut(s)	385, 600
Tru1I	TTAA	2 cut(s)	105, 179
Tru9I	TTAA	2 cut(s)	105, 179
TscAI	CASTG	4 cut(s)	190, 460, 576, 732
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	4 cut(s)	20, 222, 329, 733
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	15, 726
TspRI	CASTG	4 cut(s)	190, 460, 576, 732
VpaK11BI	GGWCC	1 cut(s)	247
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	460
XmiI	GTMKAC	2 cut(s)	288, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.