Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016014

Physical Location & Seq

Genomic Coordinates Reverse (-)

70925606 .. 70928416

Gene Structure 2811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTGTATTTTCACTCTCAGCTTCCTCCTCTTCCTTCATCTTCTCATCCTCCTCTACTTGTTCCTCTTCAACCAAACCACCTTTTCCATCTTCCTCTCCTTCTTCAAAGACCGCTAACAAAACCCCCTTCATTGGGCTCTCTGCGGCCCAATCCCAAAAGCTTTGGATTCCCACCACAAGCTCTCTTACTTTTAGCAGTGAAGGCAGTTCGAGACGGAGCTTTGAGGTTCACAGCACAAAGGAAATCACCCGCGTGCCCTTGGATGAACGCTGGATGTGGGAGGAGGACGAAGTCGAAGGCATTGATATTTGGAATAAGACATGGTACCCAAAAGCTGCAGATCATGTGAATACTGAGAAACCATGGTATATTGTTGATGCCACAGACAAGATTCTTGGAAGACTAGCATCCACAATCGCCATTTACATTCGCGGCAAAAATCTGGCAACCTATACACCCAGTGTTGACATGGGGGCATTTGTCATTGTGGTAAATGCAGAAAAGGTTGCTGTATCTGGCAAGAAAAGAAACCAAAAGCTCTATAGAAGGCATTCTGGTCGACCAGGTGGTATGACAGTGGAAACATTTGACCAGTTACAGCAGAGAATACCAGAGAGAATTGTTGAACATGCTGTTCGTGGAATGCTTCCAAAGGGGAGGCTTGGTAGGGCACTTTTCAACCATCTGAAGGTTTACAAGGGCCCAGACCACCCACATGAAGCCCAGAAGCCATTGGATCTGCCTATAAGGGACAAGAGAATACAGATACGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0019538 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

259

Amino Acids

29.09

Weight (kDa)

9.89

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L13	PF00572	122 - 239	5.5e-44	Ribosomal protein L13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78630
fragaria_vesca	FvH4_3g17780
malus_domestica	MD03G1248000.v1.1
prunus_persica	Prupe.4G156900_v2.0.a1
pyrus_communis	pycom03g19670 pycom11g23810
rosa_chinensis	RchiOBHm_Chr5g0029571
rosa_laevigata	RLG00000033180
rosa_multiflora	Rmu_sc0001608.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050370
rosa_samantha	Rh5AG207200 Rh5BG205900 Rh5CG228100 Rh5DG209700
rosa_wichuraiana	Rw5G018850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	562
AccII	CGCG	2 cut(s)	255, 435
AciI	CCGC	4 cut(s)	114, 146, 253, 435
AclWI	GGATC	1 cut(s)	747
AcuI	CTGAAG	1 cut(s)	710
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	134, 135, 691
AgsI	TTSAA	4 cut(s)	72, 108, 629, 682
AjnI	CCWGG	1 cut(s)	565
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	6 cut(s)	23, 163, 183, 222, 338, 541
AluI	AGCT	6 cut(s)	23, 163, 183, 222, 338, 541
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	1 cut(s)	747
AoxI	GGCC	2 cut(s)	147, 703
ApaI	GGGCCC	1 cut(s)	707
ApeKI	GCWGC	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	553
Asp718I	GGTACC	1 cut(s)	327
AspS9I	GGNCC	3 cut(s)	148, 703, 704
AsuHPI	GGTGA	1 cut(s)	241
BaeGI	GKGCMC	3 cut(s)	261, 676, 707
BanI	GGYRCC	1 cut(s)	327
BanII	GRGCYC	2 cut(s)	141, 707
BbsI	GAAGAC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	2 cut(s)	97, 693
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BciT130I	CCWGG	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	2 cut(s)	339, 544
BisI	GCNGC	3 cut(s)	147, 339, 436
BlsI	GCNGC	3 cut(s)	148, 340, 437
Bme1390I	CCNGG	1 cut(s)	567
BmgT120I	GGNCC	3 cut(s)	148, 703, 704
BmiI	GGNNCC	2 cut(s)	329, 705
BmrFI	CCNGG	1 cut(s)	567
BmrI	ACTGGG	1 cut(s)	456
BmsI	GCATC	2 cut(s)	370, 419
BmuI	ACTGGG	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	409
BsaJI	CCNNGG	2 cut(s)	261, 365
BsaXI	ACNNNNNCTCC	2 cut(s)	652, 682
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 135, 691
Bse1I	ACTGG	2 cut(s)	462, 595
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	261, 365
BseGI	GGATG	4 cut(s)	47, 271, 282, 410
BseLI	CCNNNNNNNGG	3 cut(s)	134, 135, 691
BseMII	CTCAG	2 cut(s)	33, 348
BseNI	ACTGG	2 cut(s)	462, 595
BseRI	GAGGAG	3 cut(s)	19, 43, 299
BseSI	GKGCMC	3 cut(s)	261, 676, 707
BseXI	GCAGC	1 cut(s)	325
Bsh1236I	CGCG	2 cut(s)	255, 435
BshFI	GGCC	2 cut(s)	149, 705
BshNI	GGYRCC	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	3 cut(s)	134, 135, 691
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	767
BsmI	GAATGC	2 cut(s)	553, 651
BsnI	GGCC	2 cut(s)	149, 705
Bsp120I	GGGCCC	1 cut(s)	703
Bsp1286I	GDGCHC	4 cut(s)	141, 261, 676, 707
Bsp143I	GATC	2 cut(s)	343, 739
Bsp19I	CCATGG	1 cut(s)	365
BspACI	CCGC	4 cut(s)	114, 146, 253, 435
BspANI	GGCC	2 cut(s)	149, 705
BspCNI	CTCAG	2 cut(s)	32, 349
BspFNI	CGCG	2 cut(s)	255, 435
BspLI	GGNNCC	2 cut(s)	329, 705
BspMAI	CTGCAG	1 cut(s)	343
BspPI	GGATC	1 cut(s)	747
BspT107I	GGYRCC	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	462, 595
BssECI	CCNNGG	2 cut(s)	261, 365
BssMI	GATC	2 cut(s)	343, 739
BssT1I	CCWWGG	2 cut(s)	261, 365
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	2 cut(s)	37, 73
BstC8I	GCNNGC	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	19, 357
BstDSI	CCRYGG	1 cut(s)	365
BstF5I	GGATG	4 cut(s)	47, 271, 282, 410
BstFNI	CGCG	2 cut(s)	255, 435
BstKTI	GATC	2 cut(s)	346, 742
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	2 cut(s)	343, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	565
BstSFI	CTRYAG	2 cut(s)	339, 544
BstSLI	GKGCMC	3 cut(s)	261, 676, 707
BstUI	CGCG	2 cut(s)	255, 435
BstV1I	GCAGC	1 cut(s)	325
BstV2I	GAAGAC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	739
BstYI	RGATCY	1 cut(s)	739
BsuRI	GGCC	2 cut(s)	149, 705
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	4 cut(s)	47, 271, 282, 410
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	3 cut(s)	205, 469, 585
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	3 cut(s)	148, 703, 704
CsiI	ACCWGGT	1 cut(s)	565
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	6 cut(s)	324, 347, 366, 472, 632, 719
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	19, 357
DpnI	GATC	2 cut(s)	345, 741
DpnII	GATC	2 cut(s)	343, 739
DraIII	CACNNNGTG	1 cut(s)	464
Eam1104I	CTCTTC	2 cut(s)	37, 73
EarI	CTCTTC	2 cut(s)	37, 73
Eco130I	CCWWGG	2 cut(s)	261, 365
Eco24I	GRGCYC	2 cut(s)	141, 707
Eco57I	CTGAAG	1 cut(s)	710
EcoO109I	RGGNCCY	1 cut(s)	703
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	261, 365
EcoT38I	GRGCYC	2 cut(s)	141, 707
ErhI	CCWWGG	2 cut(s)	261, 365
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	6 cut(s)	327, 350, 369, 475, 635, 722
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	6 cut(s)	323, 346, 365, 471, 631, 718
FauI	CCCGC	1 cut(s)	260
FblI	GTMKAC	1 cut(s)	562
Fnu4HI	GCNGC	3 cut(s)	147, 339, 436
FokI	GGATG	4 cut(s)	34, 278, 289, 397
FriOI	GRGCYC	2 cut(s)	141, 707
Fsp4HI	GCNGC	3 cut(s)	147, 339, 436
FspBI	CTAG	1 cut(s)	407
GluI	GCNGC	3 cut(s)	147, 339, 436
HaeIII	GGCC	2 cut(s)	149, 705
Hin1II	CATG	6 cut(s)	327, 350, 369, 475, 635, 722
HincII	GTYRAC	2 cut(s)	469, 563
HindII	GTYRAC	2 cut(s)	469, 563
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	169, 394
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	4 cut(s)	232, 469, 563, 697
Hpy188I	TCNGA	1 cut(s)	690
Hpy188III	TCNNGA	1 cut(s)	213
Hpy8I	GTNNAC	4 cut(s)	232, 469, 563, 697
HpyAV	CCTTC	7 cut(s)	46, 111, 139, 197, 293, 543, 685
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4V	TGCA	2 cut(s)	341, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	2 cut(s)	19, 357
Hsp92II	CATG	6 cut(s)	327, 350, 369, 475, 635, 722
KpnI	GGTACC	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	343, 739
LmnI	GCTCC	1 cut(s)	219
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	2 cut(s)	370, 419
MabI	ACCWGGT	1 cut(s)	565
MaeI	CTAG	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	597
MalI	GATC	2 cut(s)	345, 741
MboI	GATC	2 cut(s)	343, 739
MboII	GAAGA	6 cut(s)	24, 34, 60, 84, 96, 414
MflI	RGATCY	1 cut(s)	739
MhlI	GDGCHC	4 cut(s)	141, 261, 676, 707
MluCI	AATT	1 cut(s)	621
MroXI	GAANNNNTTC	1 cut(s)	553
MslI	CAYNNNNRTG	2 cut(s)	254, 717
MspR9I	CCNGG	1 cut(s)	567
Mva1269I	GAATGC	2 cut(s)	553, 651
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	2 cut(s)	255, 435
MwoI	GCNNNNNNNGC	1 cut(s)	204
NcoI	CCATGG	1 cut(s)	365
NdeII	GATC	2 cut(s)	343, 739
NlaIII	CATG	6 cut(s)	327, 350, 369, 475, 635, 722
NlaIV	GGNNCC	2 cut(s)	329, 705
NspI	RCATGY	1 cut(s)	635
OliI	CACNNNNGTG	1 cut(s)	254
PctI	GAATGC	2 cut(s)	553, 651
PdmI	GAANNNNTTC	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	169, 394
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	148, 340, 437
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	329, 705
PspOMI	GGGCCC	1 cut(s)	703
PspPI	GGNCC	3 cut(s)	148, 703, 704
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	739
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	2 cut(s)	254, 717
SalI	GTCGAC	1 cut(s)	561
SatI	GCNGC	3 cut(s)	147, 339, 436
Sau3AI	GATC	2 cut(s)	343, 739
Sau96I	GGNCC	3 cut(s)	148, 703, 704
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	4 cut(s)	141, 261, 676, 707
SexAI	ACCWGGT	1 cut(s)	565
SfaNI	GCATC	2 cut(s)	370, 419
SfcI	CTRYAG	2 cut(s)	339, 544
SmiMI	CAYNNNNRTG	2 cut(s)	254, 717
Sse9I	AATT	1 cut(s)	621
SsiI	CCGC	4 cut(s)	114, 146, 253, 435
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	565
StyI	CCWWGG	2 cut(s)	261, 365
TaaI	ACNGT	1 cut(s)	580
TaqI	TCGA	3 cut(s)	212, 297, 562
TasI	AATT	1 cut(s)	621
TauI	GCSGC	2 cut(s)	149, 438
TfiI	GAWTC	2 cut(s)	169, 394
TscAI	CASTG	3 cut(s)	205, 469, 585
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	4 cut(s)	28, 121, 282, 735
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	3 cut(s)	205, 469, 585
Tth111I	GACNNNGTC	1 cut(s)	293
XceI	RCATGY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	562
XmnI	GAANNNNTTC	1 cut(s)	553
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.