AT1G78690

phospholipid glycerol acyltransferase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006839
Physical Location & Seq
Forward (+)
29596478 .. 29598662
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78690.3

Sequence Viewer

Length: 855 bp
ATGGGGAAGATAATGGAATGGGCAGCAAGATCTGATCATTTGGGAGGAATTCCAAGGAATACTGTGATAATGGCTGTTAGTGCATTTGCAAAAGCAGTAGCAAATCTTTGCAATAAAAGCTCAGTTCACAATGCAGATACTCTTATGAATCTTGTCCAGTCAAGACCACCTGGTGTTCCTCTCATCACTGTTAGTAATCACATGTCGACTTTGGATGATCCAGTAATGTGGGGGGCATTTAAGGGTCTCCTTTCCTTAGATCCAGAATTGGCTCGGTGGGTTCTTGCTGCAGAGGATATATGTTTCAGGAACCCTATATTCTCCTACATTTTCCGCACTGGAAAATGTATACCTATAACTAGAGGTGGTGGAATCTACCAAGAAAACATGAATGAAGCTCTCCAGCGATTAAAAGATGGATCTTGGCTGCATACCTTCCCAGAGGGAAAGGTGTTTCAAGATGATGTTCCTATAAGACGACTTAAATGGGGAACTGCAAGCCTCATCGCCCGTTCCCCAGTTACCCCAATCGTTTTGCCAATAATTCACCGTGGTTTTGAGGAGATGATGCCGGAGAACTACAATAATGGACGAAGACCACTGGTACCGTTGCCGAACAAACACCTTAAAGTTGTGGTTGGTGAACCAATTGAGTTTGATGTTCCAATGATGGTTGAGACTGCTGTCTTGGACTCCCGCCATGTAACCCCTCCTCTTCAAGAAGTGAAATGGCCTGTCCTCACTTCTGCTGGCCAAGTGCTAGACGAAACTGCTCAGAGACACCTCTACATAGCTCTGTCCGAGAAGATTCAATCCTCCTTGGAAACATTGAGACTCTTAGCCAAGCGGTTGTGA

Protein Analysis

284

Amino Acids

31.74

Weight (kDa)

8.76

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 16 - 106 1.1e-10 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 604
AccI GTMKAC 2 cut(s) 206, 349
AciI CCGC 3 cut(s) 334, 697, 847
AclWI GGATC 3 cut(s) 212, 254, 427
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 1 cut(s) 48
AdeI CACNNNGTG 1 cut(s) 173
AfaI GTAC 1 cut(s) 606
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 3 cut(s) 458, 719, 812
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 3 cut(s) 120, 398, 794
AluI AGCT 3 cut(s) 120, 398, 794
Alw26I GTCTC 4 cut(s) 251, 671, 772, 826
AlwI GGATC 3 cut(s) 212, 254, 427
AoxI GGCC 2 cut(s) 731, 751
ApeKI GCWGC 3 cut(s) 23, 287, 427
ApoI RAATTY 1 cut(s) 48
Asp718I GGTACC 1 cut(s) 604
AsuHPI GGTGA 2 cut(s) 539, 653
BalI TGGCCA 1 cut(s) 753
BanI GGYRCC 1 cut(s) 604
BbsI GAAGAC 1 cut(s) 601
BbvI GCAGC 3 cut(s) 35, 274, 414
BccI CCATC 2 cut(s) 410, 664
BciT130I CCWGG 1 cut(s) 171
BclI TGATCA 1 cut(s) 34
BcoDI GTCTC 4 cut(s) 251, 671, 772, 826
BfaI CTAG 2 cut(s) 360, 761
BfmI CTRYAG 1 cut(s) 288
BglII AGATCT 1 cut(s) 29
BisI GCNGC 3 cut(s) 24, 288, 428
BlsI GCNGC 3 cut(s) 25, 289, 429
Bme1390I CCNGG 1 cut(s) 171
BmiI GGNNCC 2 cut(s) 311, 606
BmrFI CCNGG 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 512
BoxI GACNNNNGTC 1 cut(s) 683
BpiI GAAGAC 1 cut(s) 601
BpmI CTGGAG 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 53, 550, 819
Bse1I ACTGG 5 cut(s) 157, 221, 343, 518, 606
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 3 cut(s) 53, 550, 819
BseGI GGATG 1 cut(s) 220
BseMII CTCAG 2 cut(s) 135, 788
BseNI ACTGG 5 cut(s) 157, 221, 343, 518, 606
BseRI GAGGAG 2 cut(s) 575, 702
BseXI GCAGC 3 cut(s) 35, 274, 414
BshFI GGCC 2 cut(s) 733, 753
BshNI GGYRCC 1 cut(s) 604
BsiSI CCGG 1 cut(s) 572
BsmAI GTCTC 4 cut(s) 251, 671, 772, 826
BsnI GGCC 2 cut(s) 733, 753
Bso31I GGTCTC 1 cut(s) 251
Bsp143I GATC 5 cut(s) 29, 34, 217, 259, 419
BspACI CCGC 3 cut(s) 334, 697, 847
BspANI GGCC 2 cut(s) 733, 753
BspCNI CTCAG 2 cut(s) 134, 787
BspLI GGNNCC 2 cut(s) 311, 606
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 3 cut(s) 212, 254, 427
BspT107I GGYRCC 1 cut(s) 604
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 5 cut(s) 157, 221, 343, 518, 606
BssECI CCNNGG 3 cut(s) 53, 550, 819
BssMI GATC 5 cut(s) 29, 34, 217, 259, 419
BssNAI GTATAC 1 cut(s) 350
BssT1I CCWWGG 2 cut(s) 53, 819
Bst1107I GTATAC 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 4 cut(s) 64, 190, 551, 609
Bst6I CTCTTC 1 cut(s) 720
BstC8I GCNNGC 2 cut(s) 499, 751
BstDEI CTNAG 4 cut(s) 121, 256, 774, 838
BstDSI CCRYGG 1 cut(s) 550
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 5 cut(s) 32, 37, 220, 262, 422
BstMAI GTCTC 4 cut(s) 251, 671, 772, 826
BstMBI GATC 5 cut(s) 29, 34, 217, 259, 419
BstMWI GCNNNNNNNGC 2 cut(s) 80, 117
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 205
BstPAI GACNNNNGTC 1 cut(s) 683
BstSCI CCNGG 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 35, 274, 414
BstV2I GAAGAC 1 cut(s) 601
BstX2I RGATCY 3 cut(s) 29, 259, 419
BstXI CCANNNNNNTGG 1 cut(s) 228
BstYI RGATCY 3 cut(s) 29, 259, 419
BstZ17I GTATAC 1 cut(s) 350
BsuRI GGCC 2 cut(s) 733, 753
BtgI CCRYGG 1 cut(s) 550
BtgZI GCGATG 1 cut(s) 490
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 3 cut(s) 186, 336, 599
Cac8I GCNNGC 2 cut(s) 499, 751
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 1 cut(s) 605
CviAII CATG 3 cut(s) 202, 388, 701
CviQI GTAC 1 cut(s) 605
DdeI CTNAG 4 cut(s) 121, 256, 774, 838
DpnI GATC 5 cut(s) 31, 36, 219, 261, 421
DpnII GATC 5 cut(s) 29, 34, 217, 259, 419
DraIII CACNNNGTG 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 1 cut(s) 720
EarI CTCTTC 1 cut(s) 720
Eco130I CCWWGG 2 cut(s) 53, 819
Eco31I GGTCTC 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 53, 819
ErhI CCWWGG 2 cut(s) 53, 819
FaeI CATG 3 cut(s) 205, 391, 704
FatI CATG 3 cut(s) 201, 387, 700
FauI CCCGC 1 cut(s) 704
FbaI TGATCA 1 cut(s) 34
FblI GTMKAC 2 cut(s) 206, 349
Fnu4HI GCNGC 3 cut(s) 24, 288, 428
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 3 cut(s) 24, 288, 428
FspBI CTAG 2 cut(s) 360, 761
GluI GCNGC 3 cut(s) 24, 288, 428
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 2 cut(s) 733, 753
HapII CCGG 1 cut(s) 572
Hin1II CATG 3 cut(s) 205, 391, 704
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 5 cut(s) 148, 372, 692, 808, 834
HpaII CCGG 1 cut(s) 572
HphI GGTGA 2 cut(s) 539, 653
Hpy166II GTNNAC 4 cut(s) 127, 207, 350, 644
Hpy188I TCNGA 3 cut(s) 34, 777, 802
Hpy188III TCNNGA 5 cut(s) 162, 263, 307, 458, 719
Hpy8I GTNNAC 4 cut(s) 127, 207, 350, 644
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 4 cut(s) 64, 190, 551, 609
HpyCH4V TGCA 7 cut(s) 83, 89, 111, 134, 290, 430, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 117
HpyF3I CTNAG 4 cut(s) 121, 256, 774, 838
Hsp92II CATG 3 cut(s) 205, 391, 704
KpnI GGTACC 1 cut(s) 608
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 5 cut(s) 29, 34, 217, 259, 419
Lsp1109I GCAGC 3 cut(s) 35, 274, 414
LweI GCATC 1 cut(s) 558
MabI ACCWGGT 1 cut(s) 169
MaeI CTAG 2 cut(s) 360, 761
MaeIII GTNAC 2 cut(s) 520, 703
MalI GATC 5 cut(s) 31, 36, 219, 261, 421
MboI GATC 5 cut(s) 29, 34, 217, 259, 419
MboII GAAGA 4 cut(s) 19, 606, 707, 817
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 3 cut(s) 29, 259, 419
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 4 cut(s) 48, 266, 543, 648
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 2 cut(s) 686, 828
Mox20I TGGCCA 1 cut(s) 753
MscI TGGCCA 1 cut(s) 753
MseI TTAA 4 cut(s) 240, 410, 483, 627
Msp20I TGGCCA 1 cut(s) 753
MspI CCGG 1 cut(s) 572
MspR9I CCNGG 1 cut(s) 171
MunI CAATTG 1 cut(s) 648
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 80, 117
NdeII GATC 5 cut(s) 29, 34, 217, 259, 419
NlaIII CATG 3 cut(s) 205, 391, 704
NlaIV GGNNCC 2 cut(s) 311, 606
NspI RCATGY 1 cut(s) 205
PciI ACATGT 1 cut(s) 201
PfeI GAWTC 3 cut(s) 148, 372, 808
PkrI GCNGC 3 cut(s) 25, 289, 429
PleI GAGTC 2 cut(s) 686, 828
PpsI GAGTC 2 cut(s) 686, 828
PscI ACATGT 1 cut(s) 201
PshAI GACNNNNGTC 1 cut(s) 683
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 311, 606
PstI CTGCAG 1 cut(s) 292
PsuI RGATCY 3 cut(s) 29, 259, 419
RsaI GTAC 1 cut(s) 606
RsaNI GTAC 1 cut(s) 605
SalI GTCGAC 1 cut(s) 205
SaqAI TTAA 4 cut(s) 240, 410, 483, 627
SatI GCNGC 3 cut(s) 24, 288, 428
Sau3AI GATC 5 cut(s) 29, 34, 217, 259, 419
SchI GAGTC 2 cut(s) 686, 828
ScrFI CCNGG 1 cut(s) 171
SexAI ACCWGGT 1 cut(s) 169
SfaNI GCATC 1 cut(s) 558
SfcI CTRYAG 1 cut(s) 288
Sse9I AATT 4 cut(s) 48, 266, 543, 648
SsiI CCGC 3 cut(s) 334, 697, 847
SspMI CTAG 2 cut(s) 360, 761
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 2 cut(s) 53, 819
TaaI ACNGT 4 cut(s) 64, 190, 551, 609
TaqI TCGA 1 cut(s) 206
TasI AATT 4 cut(s) 48, 266, 543, 648
TfiI GAWTC 3 cut(s) 148, 372, 808
Tru1I TTAA 4 cut(s) 240, 410, 483, 627
Tru9I TTAA 4 cut(s) 240, 410, 483, 627
TscAI CASTG 3 cut(s) 193, 343, 606
TseI GCWGC 3 cut(s) 23, 287, 427
TspDTI ATGAA 3 cut(s) 161, 404, 408
TspRI CASTG 3 cut(s) 193, 343, 606
XapI RAATTY 1 cut(s) 48
XceI RCATGY 1 cut(s) 205
XmiI GTMKAC 2 cut(s) 206, 349
XspI CTAG 2 cut(s) 360, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.