Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006839

Physical Location & Seq

Genomic Coordinates Forward (+)

4534151 .. 4535704

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0058800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGAAGAAACAGGGAATGAACATAGACCTGGATGAAGCAGAGGACTGGTGCTTCGTCTGCAAAGATGGTGGAGCCTTGAGGCTGTGTGACTACCAGGGCTGCACCAAAGTCTATCACCCCAAATGTGTGGGAAGGAAGAATACTTTTCTCAAAAGCGAGAGGCGATGGATTTGTGATCACCACTCTTGTTCAGTGTGTTGCTCCGGGATCAAAATCGGCTTCTCTTGCCTTCTTTGCACATTTTCAGTGTGTGAGAATTGCCGCAAAAGTAGTGATGACTCTGAGTTTGCGGTGGTGAGAGGGAAGGAGAAATTAGGCCTCTGTGAGGATTGTTTAGAGCTTGTTAGGCTTGCGGAGGAGAATGCGGAGTATGATGGAGATGGAGATAGGTTGGACTTTGAGGATCAGGAGACATTCGAAACCGGATTTAAAGAGTGTTGGGAGATCCTCAAGGAAAAAGAGGGCTTGACTTTGGATGATATATCTGAAGAAAGAAGAGAGATGATAGATGAAGAGGAAATGACATTGAAAGAACTTCTCCTGCGGAAACACAACAACCGAAAATCAGATCATGTGGCATCATTTGATTCTGAGGAAAAGCCTAAGAAAGTGGTTTGTCCTAATTCTCCTAGGAATACCGAAGAAAATGGGATGAGCGAGGATGAGGATGATGAAACTACAGTGAAAACTTTTTCGCTGCACAAACAGAGGAAGAGAAAATTAGTGATCTCAGATTCTGAGACATCATCTGATTCTGAGGAAAAGGAGCCACATTTAGAGAATGGGATTAGTGAGGATGATGAAGATGAAATTACACTGACAGATCACGCCGCGTGCAGATTACACAAGAAGCCAAAACTGGTGATCTCTTCTGATGTTACATCACTTAATTTTGACAAAAAGTTTGAGGAAAAGGAGGAAGTGATGGATCCTAATCCCACTAGGAACGCCGAAGAAAGTTGTTTTGCGTCTGTAGTTGCTAGTAATATGAAGCTTGTCTACTTACGAAGGAGCTTGGTGGAGGAGTTGATGTCAAAGCAGCCTGATAAATGGGAGAGAAAGGTAGTGGGAAGCTATGTAAGAGTGGAAAATGACCCCAAAGACTATTTCCGGGGAAATTCCTCTCACCAACTTACACAAGTCAAAGGCATAACTAGGAAGCACGACGGTGAAGAAATTCTCCTACAACTGCTCACAAGAGATGTTCCCATTTCCTTGCTATCGGATTGCGATTTTACCGAGGAAGAATGTGGGGATTTGCGAGACAGAGTGGAGAATTATCTGATAAGGAGACCTACCGTTGTTGAGATTGAACATAAAGCAAGAGAGCTGCACGAGGATCTAACAAAGGATTGGATTGAGAGAGAATTCATCCGGTTAATGAATTGCATTCGTCACGAGACAAATCAGAGTGGATGGATCAGCACGAAGTTATCCAAGTATTTGGAGCTTAGAGAGATGCTAAAGCAAATATCAGAACAGGAAAGACTCTTGCAAAAGGAGCCACAAGTCATTGCAGAGGTCTTGGACTTGAGCGACTTATGCCTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0007507 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0016020 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032501 GO:0032502 GO:0035965 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046471 GO:0046486 GO:0048513 GO:0048731 GO:0048856 GO:0061024 GO:0071617 GO:0071704 GO:0071840 GO:0071944 GO:0072359

KEGG Pathways

Metabolic & Signaling

ko00564 ko00790 ko01523 map00564 map00790 map01523

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

517

Amino Acids

60.0

Weight (kDa)

4.93

Isoelectric Point (pI)

57.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD_NSD	PF22908	16 - 61	4.9e-06	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Plus-3	PF03126	329 - 424	2.3e-11	Plus-3 domain
NERD_plant	PF25980	446 - 497	8.5e-06	Plant NERD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78690 AT1G78690 AT1G78690 AT1G78690 AT1G78690
fragaria_vesca	FvH4_1g09860 FvH4_1g09860
malus_domestica	MD02G1106200.v1.1 MD15G1226000.v1.1
prunus_persica	Prupe.7G189000_v2.0.a1 Prupe.7G189000_v2.0.a1 Prupe.7G189000_v2.0.a1
pyrus_communis	pycom02g08400 pycom15g20090
rosa_chinensis	RchiOBHm_Chr2g0096581
rosa_laevigata	RLG00000016651
rosa_multiflora	Rmu_sc0004096.1_g000003 Rmu_sc0014659.1_g000002
rosa_roxburghii	Rroxscaffold_2G00145520
rosa_rugosa	Rorug02G0058800 Rorug02G0058900
rosa_samantha	Rh2AG105900 Rh2BG108400 Rh2CG110200 Rh2DG109000
rosa_wichuraiana	Rw2G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	999
AccII	CGCG	1 cut(s)	833
AciI	CCGC	6 cut(s)	262, 290, 353, 365, 544, 831
AclWI	GGATC	7 cut(s)	215, 411, 439, 923, 936, 1347, 1427
AcsI	RAATTY	3 cut(s)	1117, 1176, 1367
AcuI	CTGAAG	1 cut(s)	507
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	529, 1313
AjnI	CCWGG	2 cut(s)	27, 93
AjuI	GAANNNNNNNTTGG	2 cut(s)	1091, 1123
AleI	CACNNNNGTG	1 cut(s)	1167
AluBI	AGCT	6 cut(s)	340, 994, 1014, 1074, 1330, 1450
AluI	AGCT	6 cut(s)	340, 994, 1014, 1074, 1330, 1450
Alw26I	GTCTC	5 cut(s)	404, 734, 1257, 1285, 1394
AlwI	GGATC	7 cut(s)	215, 411, 439, 923, 936, 1347, 1427
AlwNI	CAGNNNCTG	1 cut(s)	737
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	4 cut(s)	99, 697, 1039, 1330
ApoI	RAATTY	3 cut(s)	1117, 1176, 1367
ArsI	GACNNNNNNTTYG	6 cut(s)	35, 67, 269, 301, 887, 919
Asp700I	GAANNNNTTC	1 cut(s)	1176
AspA2I	CCTAGG	1 cut(s)	629
AsuC2I	CCSGG	2 cut(s)	205, 1112
AsuHPI	GGTGA	6 cut(s)	107, 170, 307, 874, 1118, 1181
AsuII	TTCGAA	1 cut(s)	417
AvrII	CCTAGG	1 cut(s)	629
BamHI	GGATCC	1 cut(s)	928
BarI	GAAGNNNNNNTAC	4 cut(s)	124, 156, 983, 1015
BauI	CACGAG	2 cut(s)	1334, 1397
BbvI	GCAGC	4 cut(s)	86, 684, 1051, 1317
BccI	CCATC	6 cut(s)	59, 159, 368, 374, 919, 1410
BciT130I	CCWGG	2 cut(s)	29, 95
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	2 cut(s)	205, 1112
BcoDI	GTCTC	5 cut(s)	404, 734, 1257, 1285, 1394
BfaI	CTAG	4 cut(s)	630, 942, 981, 1155
BfmI	CTRYAG	2 cut(s)	678, 972
BisI	GCNGC	6 cut(s)	100, 262, 698, 831, 1040, 1331
BlnI	CCTAGG	1 cut(s)	629
BlsI	GCNGC	6 cut(s)	101, 263, 699, 832, 1041, 1332
Bme1390I	CCNGG	4 cut(s)	29, 95, 205, 1112
BmiI	GGNNCC	4 cut(s)	73, 768, 930, 1503
BmrFI	CCNGG	4 cut(s)	29, 95, 205, 1112
BmsI	GCATC	2 cut(s)	587, 1449
Bpu14I	TTCGAA	1 cut(s)	417
BpuEI	CTTGAG	3 cut(s)	97, 434, 1552
BpuMI	CCSGG	2 cut(s)	205, 1112
BsaBI	GATNNNNATC	2 cut(s)	212, 933
BsaI	GGTCTC	1 cut(s)	1285
BsaJI	CCNNGG	4 cut(s)	94, 629, 1111, 1239
BsaWI	WCCGGW	2 cut(s)	422, 1374
BsaXI	ACNNNNNCTCC	2 cut(s)	1016, 1046
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	2 cut(s)	50, 864
Bse3DI	GCAATG	1 cut(s)	1512
Bse8I	GATNNNNATC	2 cut(s)	212, 933
BseBI	CCWGG	2 cut(s)	29, 95
BseDI	CCNNGG	4 cut(s)	94, 629, 1111, 1239
BseGI	GGATG	8 cut(s)	37, 481, 657, 667, 673, 802, 1371, 1421
BseJI	GATNNNNATC	2 cut(s)	212, 933
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	1512
BseMII	CTCAG	5 cut(s)	273, 582, 729, 744, 747
BseNI	ACTGG	2 cut(s)	50, 864
BseRI	GAGGAG	2 cut(s)	371, 1037
BseXI	GCAGC	4 cut(s)	86, 684, 1051, 1317
BsgI	GTGCAG	4 cut(s)	85, 683, 856, 1316
Bsh1236I	CGCG	1 cut(s)	833
BshFI	GGCC	1 cut(s)	318
BsiSI	CCGG	4 cut(s)	204, 423, 1111, 1375
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	5 cut(s)	404, 734, 1257, 1285, 1394
BsmI	GAATGC	2 cut(s)	367, 1389
BsnI	GGCC	1 cut(s)	318
Bso31I	GGTCTC	1 cut(s)	1285
Bsp119I	TTCGAA	1 cut(s)	417
BspACI	CCGC	6 cut(s)	262, 290, 353, 365, 544, 831
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	5 cut(s)	274, 583, 730, 743, 748
BspFNI	CGCG	1 cut(s)	833
BspLI	GGNNCC	4 cut(s)	73, 768, 930, 1503
BspPI	GGATC	7 cut(s)	215, 411, 439, 923, 936, 1347, 1427
BspT104I	TTCGAA	1 cut(s)	417
BspTNI	GGTCTC	1 cut(s)	1285
BsrDI	GCAATG	1 cut(s)	1512
BsrI	ACTGG	2 cut(s)	50, 864
BssECI	CCNNGG	4 cut(s)	94, 629, 1111, 1239
BssSI	CACGAG	2 cut(s)	1334, 1397
BssT1I	CCWWGG	1 cut(s)	629
Bst2BI	CACGAG	2 cut(s)	1334, 1397
Bst2UI	CCWGG	2 cut(s)	29, 95
Bst4CI	ACNGT	3 cut(s)	682, 1169, 1300
Bst6I	CTCTTC	4 cut(s)	490, 507, 707, 874
BstBI	TTCGAA	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	351, 835
BstDEI	CTNAG	7 cut(s)	282, 591, 603, 730, 738, 756, 1451
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	8 cut(s)	37, 481, 657, 667, 673, 802, 1371, 1421
BstFNI	CGCG	1 cut(s)	833
BstMAI	GTCTC	5 cut(s)	404, 734, 1257, 1285, 1394
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 225, 234, 346, 1501, 1542
BstNI	CCWGG	2 cut(s)	29, 95
BstSCI	CCNGG	4 cut(s)	27, 93, 203, 1110
BstSFI	CTRYAG	2 cut(s)	678, 972
BstUI	CGCG	1 cut(s)	833
BstV1I	GCAGC	4 cut(s)	86, 684, 1051, 1317
BstX2I	RGATCY	3 cut(s)	444, 928, 1339
BstXI	CCANNNNNNTGG	2 cut(s)	127, 1444
BstYI	RGATCY	3 cut(s)	444, 928, 1339
BsuRI	GGCC	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	8 cut(s)	37, 481, 657, 667, 673, 802, 1371, 1421
BtsIMutI	CAGTG	4 cut(s)	198, 252, 687, 815
Cac8I	GCNNGC	2 cut(s)	351, 835
CaiI	CAGNNNCTG	1 cut(s)	737
CseI	GACGC	1 cut(s)	957
CspCI	CAANNNNNGTGG	2 cut(s)	49, 84
CviAII	CATG	1 cut(s)	572
DdeI	CTNAG	7 cut(s)	282, 591, 603, 730, 738, 756, 1451
DraI	TTTAAA	1 cut(s)	430
Eam1104I	CTCTTC	4 cut(s)	490, 507, 707, 874
EarI	CTCTTC	4 cut(s)	490, 507, 707, 874
Eco130I	CCWWGG	1 cut(s)	629
Eco147I	AGGCCT	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	1285
Eco57I	CTGAAG	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	1367
EcoRII	CCWGG	2 cut(s)	27, 93
EcoT14I	CCWWGG	1 cut(s)	629
ErhI	CCWWGG	1 cut(s)	629
FaeI	CATG	1 cut(s)	575
FaiI	YATR	9 cut(s)	23, 372, 482, 573, 989, 1077, 1151, 1317, 1543
FatI	CATG	1 cut(s)	571
FbaI	TGATCA	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	999
Fnu4HI	GCNGC	6 cut(s)	100, 262, 698, 831, 1040, 1331
FokI	GGATG	8 cut(s)	44, 488, 664, 674, 680, 809, 1358, 1428
Fsp4HI	GCNGC	6 cut(s)	100, 262, 698, 831, 1040, 1331
FspBI	CTAG	4 cut(s)	630, 942, 981, 1155
GluI	GCNGC	6 cut(s)	100, 262, 698, 831, 1040, 1331
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	4 cut(s)	204, 423, 1111, 1375
HgaI	GACGC	1 cut(s)	957
Hin1II	CATG	1 cut(s)	575
HindIII	AAGCTT	1 cut(s)	992
HinfI	GANTC	5 cut(s)	278, 587, 734, 752, 1488
HpaII	CCGG	4 cut(s)	204, 423, 1111, 1375
HphI	GGTGA	6 cut(s)	107, 170, 307, 874, 1118, 1181
Hpy166II	GTNNAC	1 cut(s)	1000
Hpy188III	TCNNGA	2 cut(s)	407, 1397
Hpy8I	GTNNAC	1 cut(s)	1000
Hpy99I	CGWCG	1 cut(s)	1169
HpyAV	CCTTC	4 cut(s)	126, 239, 298, 1002
HpyCH4III	ACNGT	3 cut(s)	682, 1169, 1300
HpyCH4V	TGCA	9 cut(s)	60, 102, 237, 700, 837, 1333, 1389, 1495, 1517
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 225, 234, 346, 1501, 1542
HpyF3I	CTNAG	7 cut(s)	282, 591, 603, 730, 738, 756, 1451
Hsp92II	CATG	1 cut(s)	575
Ksp22I	TGATCA	1 cut(s)	175
LmnI	GCTCC	6 cut(s)	71, 206, 766, 1011, 1447, 1501
Lsp1109I	GCAGC	4 cut(s)	86, 684, 1051, 1317
LweI	GCATC	2 cut(s)	587, 1449
MaeI	CTAG	4 cut(s)	630, 942, 981, 1155
MaeIII	GTNAC	3 cut(s)	86, 877, 1394
MflI	RGATCY	3 cut(s)	444, 928, 1339
MlyI	GAGTC	2 cut(s)	272, 1482
MmeI	TCCRAC	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	1176
MseI	TTAA	4 cut(s)	429, 888, 1379, 1552
MslI	CAYNNNNRTG	1 cut(s)	1167
MspI	CCGG	4 cut(s)	204, 423, 1111, 1375
MspR9I	CCNGG	4 cut(s)	29, 95, 205, 1112
Mva1269I	GAATGC	2 cut(s)	367, 1389
MvaI	CCWGG	2 cut(s)	29, 95
MvnI	CGCG	1 cut(s)	833
MwoI	GCNNNNNNNGC	6 cut(s)	57, 225, 234, 346, 1501, 1542
NciI	CCSGG	2 cut(s)	205, 1112
NlaIII	CATG	1 cut(s)	575
NlaIV	GGNNCC	4 cut(s)	73, 768, 930, 1503
NmuCI	GTSAC	2 cut(s)	86, 1394
NspV	TTCGAA	1 cut(s)	417
OliI	CACNNNNGTG	1 cut(s)	1167
PceI	AGGCCT	1 cut(s)	318
PctI	GAATGC	2 cut(s)	367, 1389
PdmI	GAANNNNTTC	1 cut(s)	1176
PfeI	GAWTC	3 cut(s)	587, 734, 752
PfoI	TCCNGGA	1 cut(s)	203
PkrI	GCNGC	6 cut(s)	101, 263, 699, 832, 1041, 1332
PleI	GAGTC	2 cut(s)	272, 1482
PpsI	GAGTC	2 cut(s)	272, 1482
Psp6I	CCWGG	2 cut(s)	27, 93
PspGI	CCWGG	2 cut(s)	27, 93
PspN4I	GGNNCC	4 cut(s)	73, 768, 930, 1503
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	3 cut(s)	444, 928, 1339
RseI	CAYNNNNRTG	1 cut(s)	1167
SaqAI	TTAA	4 cut(s)	429, 888, 1379, 1552
SatI	GCNGC	6 cut(s)	100, 262, 698, 831, 1040, 1331
SchI	GAGTC	2 cut(s)	272, 1482
ScrFI	CCNGG	4 cut(s)	29, 95, 205, 1112
SfaNI	GCATC	2 cut(s)	587, 1449
SfcI	CTRYAG	2 cut(s)	678, 972
SfuI	TTCGAA	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	1167
SmlI	CTYRAG	3 cut(s)	76, 449, 1531
SmoI	CTYRAG	3 cut(s)	76, 449, 1531
SseBI	AGGCCT	1 cut(s)	318
SsiI	CCGC	6 cut(s)	262, 290, 353, 365, 544, 831
SspMI	CTAG	4 cut(s)	630, 942, 981, 1155
StuI	AGGCCT	1 cut(s)	318
StyD4I	CCNGG	4 cut(s)	27, 93, 203, 1110
StyI	CCWWGG	1 cut(s)	629
TaaI	ACNGT	3 cut(s)	682, 1169, 1300
TaqI	TCGA	1 cut(s)	417
TauI	GCSGC	2 cut(s)	264, 833
TfiI	GAWTC	3 cut(s)	587, 734, 752
Tru1I	TTAA	4 cut(s)	429, 888, 1379, 1552
Tru9I	TTAA	4 cut(s)	429, 888, 1379, 1552
TscAI	CASTG	4 cut(s)	198, 252, 687, 822
TseFI	GTSAC	2 cut(s)	86, 1394
TseI	GCWGC	4 cut(s)	99, 697, 1039, 1330
Tsp45I	GTSAC	2 cut(s)	86, 1394
TspRI	CASTG	4 cut(s)	198, 252, 687, 822
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	3 cut(s)	1117, 1176, 1367
XmaJI	CCTAGG	1 cut(s)	629
XmiI	GTMKAC	1 cut(s)	999
XmnI	GAANNNNTTC	1 cut(s)	1176
XspI	CTAG	4 cut(s)	630, 942, 981, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.