Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006839

Physical Location & Seq

Genomic Coordinates Reverse (-)

83422599 .. 83424847

Gene Structure 2249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCGCGAAGAGTAATGGAATGGGCGGGTCGGGCCGATTACATGGGCGGCATTCCAAGGAAGATAGTGATCGGAGCCGTCGGAACCTTCGCGAAGGCCTGGGTCACCATTCTCAACTCCACCACCGTTCACAATGCCGATACGCTTCTTAACCTAGTCCGCTATCGCCCTATTGGCCTCCCTCTCATCACTGTAAGCAACCACATGTCCACTCTAGACGACCCGTTTCTGTGGGGTTTCAAGGGTTTTCCGATTTGTGATGCCAATTTGTCGCGGTGGGTTTTGGCCGCAGAGGACATCTGCTTCAAAAGCTCGCCGCTTTCGTACTTTTTCCGGCTTGGGAAGTGTATACCGATTACGAGAGGCGCTGGGATTTATCAGGAGCATATGAATGAAGCTCTTGAAAGATTGAGTGAAGGAGCCTGGTTGCACACGTTTCCTGAAGGAAAAGTGTACCAGGAAGATGCACCTATAAGAAGATTGAAATGGGGGACTGCTAGTCTCATTGCTCGTGCTCCAGTGACCCCAATAGTTTTGCCAATTGTACATAGTGGGTTTGACAAGGTGATGCCTGACAAATCTTCCCGTGGTAAAAGGCCTCCCTTTCCATTACTTAATAAGGAAATTAAGATAATTGTCGGTGAGCCAATGGAATTTGACATACCTAAAATGAGGCAGGTAGCTACCTCTCTGTCTCCTAAAATGTCACATCGTTCTTTAGGATGGCCAAGCCTTTGCCCAGGTGGTTTGGATGAGGCAGCACAGAGATGTCTGTATGTTGAAATTTCAGAACAAATCCAAAATGCCTTGGAGAGATTACGAATTTTTGGTAAAAGTTTTACAAACTCAAAAGATCAAAATCCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0007507 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0016020 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032501 GO:0032502 GO:0035965 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046471 GO:0046486 GO:0048513 GO:0048731 GO:0048856 GO:0061024 GO:0071617 GO:0071704 GO:0071840 GO:0071944 GO:0072359

KEGG Pathways

Metabolic & Signaling

ko00564 ko00790 ko01523 map00564 map00790 map01523

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

289

Amino Acids

32.38

Weight (kDa)

9.33

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	44 - 183	9e-17	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78690 AT1G78690 AT1G78690 AT1G78690 AT1G78690
fragaria_vesca	FvH4_1g09860 FvH4_1g09860
malus_domestica	MD02G1106200.v1.1 MD15G1226000.v1.1
prunus_persica	Prupe.7G189000_v2.0.a1 Prupe.7G189000_v2.0.a1 Prupe.7G189000_v2.0.a1
pyrus_communis	pycom02g08400 pycom15g20090
rosa_chinensis	RchiOBHm_Chr2g0096581
rosa_laevigata	RLG00000016651
rosa_multiflora	Rmu_sc0004096.1_g000003 Rmu_sc0014659.1_g000002
rosa_roxburghii	Rroxscaffold_2G00145520
rosa_rugosa	Rorug02G0058800 Rorug02G0058900
rosa_samantha	Rh2AG105900 Rh2BG108400 Rh2CG110200 Rh2DG109000
rosa_wichuraiana	Rw2G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	349
AccII	CGCG	3 cut(s)	7, 92, 274
AciI	CCGC	6 cut(s)	26, 48, 160, 274, 288, 317
AcoI	YGGCCR	2 cut(s)	285, 725
AcsI	RAATTY	3 cut(s)	653, 783, 822
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	3 cut(s)	326, 455, 546
AflIII	ACRYGT	2 cut(s)	204, 432
AgsI	TTSAA	5 cut(s)	241, 307, 404, 484, 782
AhdI	GACNNNNNGTC	1 cut(s)	498
AjnI	CCWGG	4 cut(s)	98, 422, 456, 739
AluBI	AGCT	3 cut(s)	312, 398, 683
AluI	AGCT	3 cut(s)	312, 398, 683
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	2 cut(s)	506, 699
AoxI	GGCC	6 cut(s)	33, 96, 175, 285, 596, 725
ApeKI	GCWGC	1 cut(s)	758
ApoI	RAATTY	3 cut(s)	653, 783, 822
AspLEI	GCGC	2 cut(s)	7, 368
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	3 cut(s)	97, 577, 653
BalI	TGGCCA	1 cut(s)	727
BauI	CACGAG	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	1 cut(s)	770
BccI	CCATC	1 cut(s)	717
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	4 cut(s)	100, 424, 458, 741
BcoDI	GTCTC	2 cut(s)	506, 699
BfaI	CTAG	4 cut(s)	155, 215, 498, 868
BfoI	RGCGCY	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	667
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	4 cut(s)	49, 288, 317, 759
BlsI	GCNGC	4 cut(s)	50, 289, 318, 760
Bme1390I	CCNGG	4 cut(s)	100, 424, 458, 741
BmeRI	GACNNNNNGTC	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	3 cut(s)	76, 85, 421
BmrFI	CCNGG	4 cut(s)	100, 424, 458, 741
BmsI	GCATC	3 cut(s)	250, 454, 558
BpmI	CTGGAG	1 cut(s)	501
BsaBI	GATNNNNATC	2 cut(s)	68, 858
BsaJI	CCNNGG	5 cut(s)	56, 99, 586, 739, 807
Bse1I	ACTGG	1 cut(s)	518
Bse3DI	GCAATG	1 cut(s)	504
Bse8I	GATNNNNATC	2 cut(s)	68, 858
BseBI	CCWGG	4 cut(s)	100, 424, 458, 741
BseDI	CCNNGG	5 cut(s)	56, 99, 586, 739, 807
BseGI	GGATG	2 cut(s)	728, 757
BseJI	GATNNNNATC	2 cut(s)	68, 858
BseMI	GCAATG	1 cut(s)	504
BseNI	ACTGG	1 cut(s)	518
BseXI	GCAGC	1 cut(s)	770
BseYI	CCCAGC	1 cut(s)	368
Bsh1236I	CGCG	3 cut(s)	7, 92, 274
BshFI	GGCC	6 cut(s)	35, 98, 177, 287, 598, 727
BsiHKAI	GWGCWC	1 cut(s)	517
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	505
BsmAI	GTCTC	2 cut(s)	506, 699
BsmFI	GGGAC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	6 cut(s)	35, 98, 177, 287, 598, 727
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp1407I	TGTACA	1 cut(s)	544
Bsp143I	GATC	2 cut(s)	69, 853
Bsp68I	TCGCGA	1 cut(s)	92
BspACI	CCGC	6 cut(s)	26, 48, 160, 274, 288, 317
BspANI	GGCC	6 cut(s)	35, 98, 177, 287, 598, 727
BspFNI	CGCG	3 cut(s)	7, 92, 274
BspLI	GGNNCC	3 cut(s)	76, 85, 421
BspMI	ACCTGC	1 cut(s)	667
BsrDI	GCAATG	1 cut(s)	504
BsrGI	TGTACA	1 cut(s)	544
BsrI	ACTGG	1 cut(s)	518
BssECI	CCNNGG	5 cut(s)	56, 99, 586, 739, 807
BssMI	GATC	2 cut(s)	69, 853
BssNAI	GTATAC	1 cut(s)	350
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	2 cut(s)	56, 807
Bst1107I	GTATAC	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	4 cut(s)	100, 424, 458, 741
Bst4CI	ACNGT	2 cut(s)	127, 193
Bst6I	CTCTTC	1 cut(s)	4
BstAUI	TGTACA	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	314
BstDSI	CCRYGG	1 cut(s)	586
BstEII	GGTNACC	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	728, 757
BstFNI	CGCG	3 cut(s)	7, 92, 274
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	2 cut(s)	7, 368
BstKTI	GATC	2 cut(s)	72, 856
BstMAI	GTCTC	2 cut(s)	506, 699
BstMBI	GATC	2 cut(s)	69, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 174, 309
BstNI	CCWGG	4 cut(s)	100, 424, 458, 741
BstNSI	RCATGY	1 cut(s)	208
BstPI	GGTNACC	1 cut(s)	103
BstSCI	CCNGG	4 cut(s)	98, 422, 456, 739
BstUI	CGCG	3 cut(s)	7, 92, 274
BstV1I	GCAGC	1 cut(s)	770
BstZ17I	GTATAC	1 cut(s)	350
BsuRI	GGCC	6 cut(s)	35, 98, 177, 287, 598, 727
BtgI	CCRYGG	1 cut(s)	586
BtsCI	GGATG	2 cut(s)	728, 757
BtsIMutI	CAGTG	2 cut(s)	189, 525
BtuMI	TCGCGA	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	1 cut(s)	314
CfoI	GCGC	2 cut(s)	7, 368
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	3 cut(s)	325, 454, 545
CviAII	CATG	2 cut(s)	43, 205
CviQI	GTAC	3 cut(s)	325, 454, 545
DpnI	GATC	2 cut(s)	71, 855
DpnII	GATC	2 cut(s)	69, 853
DriI	GACNNNNNGTC	1 cut(s)	498
EaeI	YGGCCR	2 cut(s)	285, 725
Eam1104I	CTCTTC	1 cut(s)	4
Eam1105I	GACNNNNNGTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	4
Eco130I	CCWWGG	2 cut(s)	56, 807
Eco147I	AGGCCT	2 cut(s)	98, 598
Eco57I	CTGAAG	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	103
EcoO65I	GGTNACC	1 cut(s)	103
EcoRII	CCWGG	4 cut(s)	98, 422, 456, 739
EcoT14I	CCWWGG	2 cut(s)	56, 807
ErhI	CCWWGG	2 cut(s)	56, 807
FaeI	CATG	2 cut(s)	46, 208
FaiI	YATR	9 cut(s)	44, 206, 350, 387, 389, 473, 549, 662, 777
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	2 cut(s)	42, 204
FauI	CCCGC	1 cut(s)	19
FauNDI	CATATG	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	4 cut(s)	49, 288, 317, 759
FokI	GGATG	2 cut(s)	735, 764
Fsp4HI	GCNGC	4 cut(s)	49, 288, 317, 759
FspBI	CTAG	4 cut(s)	155, 215, 498, 868
GlaI	GCGC	2 cut(s)	6, 367
GluI	GCNGC	4 cut(s)	49, 288, 317, 759
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	501
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	6 cut(s)	35, 98, 177, 287, 598, 727
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	2 cut(s)	7, 368
Hin1II	CATG	2 cut(s)	46, 208
Hin6I	GCGC	2 cut(s)	5, 366
HinP1I	GCGC	2 cut(s)	5, 366
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	3 cut(s)	97, 577, 653
Hpy166II	GTNNAC	4 cut(s)	130, 210, 350, 454
Hpy188I	TCNGA	4 cut(s)	74, 83, 252, 790
Hpy188III	TCNNGA	5 cut(s)	91, 215, 380, 401, 440
Hpy8I	GTNNAC	4 cut(s)	130, 210, 350, 454
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	4 cut(s)	88, 97, 410, 437
HpyCH4III	ACNGT	2 cut(s)	127, 193
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	2 cut(s)	430, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 174, 309
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	2 cut(s)	46, 208
HspAI	GCGC	2 cut(s)	5, 366
Kzo9I	GATC	2 cut(s)	69, 853
LmnI	GCTCC	4 cut(s)	74, 382, 419, 520
Lsp1109I	GCAGC	1 cut(s)	770
LweI	GCATC	3 cut(s)	250, 454, 558
MaeI	CTAG	4 cut(s)	155, 215, 498, 868
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	3 cut(s)	103, 520, 705
MalI	GATC	2 cut(s)	71, 855
MboI	GATC	2 cut(s)	69, 853
MboII	GAAGA	5 cut(s)	21, 73, 473, 489, 573
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	727
MluCI	AATT	7 cut(s)	265, 540, 624, 633, 653, 783, 822
MluNI	TGGCCA	1 cut(s)	727
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	8 cut(s)	188, 192, 286, 356, 609, 666, 697, 748
Mox20I	TGGCCA	1 cut(s)	727
MscI	TGGCCA	1 cut(s)	727
MseI	TTAA	3 cut(s)	150, 615, 627
MslI	CAYNNNNRTG	2 cut(s)	390, 766
Msp20I	TGGCCA	1 cut(s)	727
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	4 cut(s)	100, 424, 458, 741
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	51
MvaI	CCWGG	4 cut(s)	100, 424, 458, 741
MvnI	CGCG	3 cut(s)	7, 92, 274
MwoI	GCNNNNNNNGC	3 cut(s)	32, 174, 309
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	2 cut(s)	69, 853
NlaIII	CATG	2 cut(s)	46, 208
NlaIV	GGNNCC	3 cut(s)	76, 85, 421
NmuCI	GTSAC	3 cut(s)	103, 520, 705
NruI	TCGCGA	1 cut(s)	92
NspI	RCATGY	1 cut(s)	208
PceI	AGGCCT	2 cut(s)	98, 598
PciI	ACATGT	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PctI	GAATGC	1 cut(s)	51
PkrI	GCNGC	4 cut(s)	50, 289, 318, 760
PscI	ACATGT	1 cut(s)	204
Psp6I	CCWGG	4 cut(s)	98, 422, 456, 739
PspEI	GGTNACC	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	4 cut(s)	98, 422, 456, 739
PspN4I	GGNNCC	3 cut(s)	76, 85, 421
PspPI	GGNCC	1 cut(s)	33
RruI	TCGCGA	1 cut(s)	92
RsaI	GTAC	3 cut(s)	326, 455, 546
RsaNI	GTAC	3 cut(s)	325, 454, 545
RseI	CAYNNNNRTG	2 cut(s)	390, 766
SaqAI	TTAA	3 cut(s)	150, 615, 627
SatI	GCNGC	4 cut(s)	49, 288, 317, 759
Sau3AI	GATC	2 cut(s)	69, 853
Sau96I	GGNCC	1 cut(s)	33
ScrFI	CCNGG	4 cut(s)	100, 424, 458, 741
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	3 cut(s)	250, 454, 558
SmiMI	CAYNNNNRTG	2 cut(s)	390, 766
Sse9I	AATT	7 cut(s)	265, 540, 624, 633, 653, 783, 822
SseBI	AGGCCT	2 cut(s)	98, 598
SsiI	CCGC	6 cut(s)	26, 48, 160, 274, 288, 317
SspMI	CTAG	4 cut(s)	155, 215, 498, 868
StuI	AGGCCT	2 cut(s)	98, 598
StyD4I	CCNGG	4 cut(s)	98, 422, 456, 739
StyI	CCWWGG	2 cut(s)	56, 807
TaaI	ACNGT	2 cut(s)	127, 193
TaiI	ACGT	1 cut(s)	437
TasI	AATT	7 cut(s)	265, 540, 624, 633, 653, 783, 822
TatI	WGTACW	1 cut(s)	544
TauI	GCSGC	3 cut(s)	51, 290, 319
Tru1I	TTAA	3 cut(s)	150, 615, 627
Tru9I	TTAA	3 cut(s)	150, 615, 627
TscAI	CASTG	2 cut(s)	196, 525
TseFI	GTSAC	3 cut(s)	103, 520, 705
TseI	GCWGC	1 cut(s)	758
Tsp45I	GTSAC	3 cut(s)	103, 520, 705
TspDTI	ATGAA	2 cut(s)	404, 408
TspRI	CASTG	2 cut(s)	196, 525
XapI	RAATTY	3 cut(s)	653, 783, 822
XbaI	TCTAGA	1 cut(s)	214
XceI	RCATGY	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	349
XspI	CTAG	4 cut(s)	155, 215, 498, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.