Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004096.1

Orthogroup ID

OG0006839

Physical Location & Seq

Genomic Coordinates Reverse (-)

9255 .. 11905

Gene Structure 2651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004096.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atggcgcgaagagtaatggaatgggcgggtcgggccgattacatgggcggcattccaaggaagatagtgatcggagccgtcggaagcttcgcgaaggcctgggtcacctttctcaactccaccaccgttcacaatgctgatacgcttcttaacctagtccgctctcgccctattggcgtccctctcatcactgtaagcaaccacatgtccactctagacgacccgtttctgtggggtttcaagggttttccgatttgtgatgccaatttgtcgcggtgggttttggccgcagaggacatctgcttcaaaagctcgccgctttcgtactttttccggcttggtaagtgtataccgattacgagaggcgctgggatttatcaggagcatatgaacgaagctcttgaaagattgagtgaaggagcctggttgcacacgtttcctgaaggaaaagtgtaccaggaagatgcacctataagaagattgaaatgggggactgctagtctcattgctcgtgctccagtgaccccaatagttttgccaattgtccatagtgggtttgataaggtgatgcctgacaaatcttctcgtggtaaaaggcctccctttccattgcttaataaggaaattaagataattgttggggagccaatggaatttgacatacctaaaatgaggcaggtggctaccactctgtctcctaaaatgtcacatccttctttaggatggccaagaatttatccaggtggtttggatgaggcagcacagagaagtctgtacagtgcaatttcagagaaaatccaaaatgccttggagagattacgaatttttgatagaccctgtttgacttgggttcatactggcctggagtgcgctaccggtgttttgttttttcactataaacgggagagggctgataagtattgtaatacagagtccactaaaaggggtcaccgctacggaacttgccgagaggtgctgaatcaacttgatcctcttaaagaacagtgttatcgccactaccctatgccatgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0007507 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0016020 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032501 GO:0032502 GO:0035965 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046471 GO:0046486 GO:0048513 GO:0048731 GO:0048856 GO:0061024 GO:0071617 GO:0071704 GO:0071840 GO:0071944 GO:0072359

KEGG Pathways

Metabolic & Signaling

ko00564 ko00790 ko01523 map00564 map00790 map01523

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

344

Amino Acids

39.01

Weight (kDa)

9.37

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78690 AT1G78690 AT1G78690 AT1G78690 AT1G78690
fragaria_vesca	FvH4_1g09860 FvH4_1g09860
malus_domestica	MD02G1106200.v1.1 MD15G1226000.v1.1
prunus_persica	Prupe.7G189000_v2.0.a1 Prupe.7G189000_v2.0.a1 Prupe.7G189000_v2.0.a1
pyrus_communis	pycom02g08400 pycom15g20090
rosa_chinensis	RchiOBHm_Chr2g0096581
rosa_laevigata	RLG00000016651
rosa_multiflora	Rmu_sc0004096.1_g000003 Rmu_sc0014659.1_g000002
rosa_roxburghii	Rroxscaffold_2G00145520
rosa_rugosa	Rorug02G0058800 Rorug02G0058900
rosa_samantha	Rh2AG105900 Rh2BG108400 Rh2CG110200 Rh2DG109000
rosa_wichuraiana	Rw2G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	667
Acc36I	ACCTGC	1 cut(s)	667
AccBSI	CCGCTC	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	349
AccII	CGCG	3 cut(s)	7, 92, 274
AciI	CCGC	7 cut(s)	26, 48, 160, 274, 288, 317, 952
AclWI	GGATC	1 cut(s)	983
AcoI	YGGCCR	2 cut(s)	285, 725
AcsI	RAATTY	3 cut(s)	653, 732, 822
AcuI	CTGAAG	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	3 cut(s)	326, 455, 776
AfiI	CCNNNNNNNGG	2 cut(s)	719, 942
AflIII	ACRYGT	2 cut(s)	204, 432
AgeI	ACCGGT	1 cut(s)	875
AgsI	TTSAA	4 cut(s)	241, 307, 404, 484
AhdI	GACNNNNNGTC	1 cut(s)	498
AjnI	CCWGG	5 cut(s)	98, 422, 456, 739, 861
AluBI	AGCT	3 cut(s)	87, 312, 398
AluI	AGCT	3 cut(s)	87, 312, 398
Alw21I	GWGCWC	1 cut(s)	517
Alw26I	GTCTC	2 cut(s)	506, 699
AlwI	GGATC	1 cut(s)	983
AoxI	GGCC	6 cut(s)	33, 96, 285, 596, 725, 859
ApeKI	GCWGC	1 cut(s)	758
ApoI	RAATTY	3 cut(s)	653, 732, 822
AsiGI	ACCGGT	1 cut(s)	875
AspLEI	GCGC	3 cut(s)	7, 368, 872
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	3 cut(s)	97, 577, 941
BalI	TGGCCA	1 cut(s)	727
BauI	CACGAG	2 cut(s)	510, 585
Bbv12I	GWGCWC	1 cut(s)	517
BbvI	GCAGC	1 cut(s)	770
BccI	CCATC	1 cut(s)	717
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	5 cut(s)	100, 424, 458, 741, 863
BcoDI	GTCTC	2 cut(s)	506, 699
BfaI	CTAG	3 cut(s)	155, 215, 498
BfoI	RGCGCY	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	667
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	4 cut(s)	49, 288, 317, 759
BlsI	GCNGC	4 cut(s)	50, 289, 318, 760
Bme1390I	CCNGG	5 cut(s)	100, 424, 458, 741, 863
BmeRI	GACNNNNNGTC	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	3 cut(s)	76, 421, 645
BmrFI	CCNGG	5 cut(s)	100, 424, 458, 741, 863
BmsI	GCATC	3 cut(s)	250, 454, 558
BpmI	CTGGAG	2 cut(s)	501, 884
BsaBI	GATNNNNATC	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	56, 99, 807
BsaWI	WCCGGW	1 cut(s)	875
BsaXI	ACNNNNNCTCC	2 cut(s)	679, 709
Bsc4I	CCNNNNNNNGG	2 cut(s)	719, 942
Bse118I	RCCGGY	1 cut(s)	875
Bse1I	ACTGG	2 cut(s)	518, 862
Bse3DI	GCAATG	2 cut(s)	504, 608
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	5 cut(s)	100, 424, 458, 741, 863
BseDI	CCNNGG	3 cut(s)	56, 99, 807
BseGI	GGATG	3 cut(s)	709, 728, 757
BseJI	GATNNNNATC	1 cut(s)	68
BseLI	CCNNNNNNNGG	2 cut(s)	719, 942
BseMI	GCAATG	2 cut(s)	504, 608
BseNI	ACTGG	2 cut(s)	518, 862
BseXI	GCAGC	1 cut(s)	770
BseYI	CCCAGC	1 cut(s)	368
Bsh1236I	CGCG	3 cut(s)	7, 92, 274
BshFI	GGCC	6 cut(s)	35, 98, 287, 598, 727, 861
BshTI	ACCGGT	1 cut(s)	875
BsiHKAI	GWGCWC	1 cut(s)	517
BsiSI	CCGG	2 cut(s)	334, 876
BslFI	GGGAC	2 cut(s)	164, 505
BslI	CCNNNNNNNGG	2 cut(s)	719, 942
BsmAI	GTCTC	2 cut(s)	506, 699
BsmFI	GGGAC	2 cut(s)	164, 505
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	6 cut(s)	35, 98, 287, 598, 727, 861
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	2 cut(s)	69, 988
Bsp68I	TCGCGA	1 cut(s)	92
BspACI	CCGC	7 cut(s)	26, 48, 160, 274, 288, 317, 952
BspANI	GGCC	6 cut(s)	35, 98, 287, 598, 727, 861
BspFNI	CGCG	3 cut(s)	7, 92, 274
BspLI	GGNNCC	3 cut(s)	76, 421, 645
BspMI	ACCTGC	1 cut(s)	667
BspPI	GGATC	1 cut(s)	983
BsrBI	CCGCTC	1 cut(s)	162
BsrDI	GCAATG	2 cut(s)	504, 608
BsrFI	RCCGGY	1 cut(s)	875
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	2 cut(s)	518, 862
BssAI	RCCGGY	1 cut(s)	875
BssECI	CCNNGG	3 cut(s)	56, 99, 807
BssMI	GATC	2 cut(s)	69, 988
BssNAI	GTATAC	1 cut(s)	350
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	2 cut(s)	510, 585
BssT1I	CCWWGG	2 cut(s)	56, 807
Bst1107I	GTATAC	1 cut(s)	350
Bst2BI	CACGAG	2 cut(s)	510, 585
Bst2UI	CCWGG	5 cut(s)	100, 424, 458, 741, 863
Bst4CI	ACNGT	4 cut(s)	127, 193, 779, 1005
Bst6I	CTCTTC	1 cut(s)	4
BstACI	GRCGYC	1 cut(s)	177
BstAUI	TGTACA	1 cut(s)	774
BstC8I	GCNNGC	1 cut(s)	314
BstEII	GGTNACC	2 cut(s)	103, 947
BstENI	CCTNNNNNAGG	1 cut(s)	717
BstF5I	GGATG	3 cut(s)	709, 728, 757
BstFNI	CGCG	3 cut(s)	7, 92, 274
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	3 cut(s)	7, 368, 872
BstKTI	GATC	2 cut(s)	72, 991
BstMAI	GTCTC	2 cut(s)	506, 699
BstMBI	GATC	2 cut(s)	69, 988
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 174, 309, 867
BstNI	CCWGG	5 cut(s)	100, 424, 458, 741, 863
BstNSI	RCATGY	1 cut(s)	208
BstPI	GGTNACC	2 cut(s)	103, 947
BstSCI	CCNGG	5 cut(s)	98, 422, 456, 739, 861
BstUI	CGCG	3 cut(s)	7, 92, 274
BstV1I	GCAGC	1 cut(s)	770
BstZ17I	GTATAC	1 cut(s)	350
BsuRI	GGCC	6 cut(s)	35, 98, 287, 598, 727, 861
BtsCI	GGATG	3 cut(s)	709, 728, 757
BtsIMutI	CAGTG	4 cut(s)	189, 525, 784, 1010
BtuMI	TCGCGA	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	1 cut(s)	314
CfoI	GCGC	3 cut(s)	7, 368, 872
Cfr10I	RCCGGY	1 cut(s)	875
Cfr13I	GGNCC	1 cut(s)	33
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	325, 454, 775
CspAI	ACCGGT	1 cut(s)	875
CviAII	CATG	3 cut(s)	43, 205, 1029
CviQI	GTAC	3 cut(s)	325, 454, 775
DpnI	GATC	2 cut(s)	71, 990
DpnII	GATC	2 cut(s)	69, 988
DriI	GACNNNNNGTC	1 cut(s)	498
EaeI	YGGCCR	2 cut(s)	285, 725
Eam1104I	CTCTTC	1 cut(s)	4
Eam1105I	GACNNNNNGTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	4
Eco130I	CCWWGG	2 cut(s)	56, 807
Eco147I	AGGCCT	2 cut(s)	98, 598
Eco57I	CTGAAG	1 cut(s)	462
Eco91I	GGTNACC	2 cut(s)	103, 947
EcoNI	CCTNNNNNAGG	1 cut(s)	717
EcoO65I	GGTNACC	2 cut(s)	103, 947
EcoRII	CCWGG	5 cut(s)	98, 422, 456, 739, 861
EcoT14I	CCWWGG	2 cut(s)	56, 807
ErhI	CCWWGG	2 cut(s)	56, 807
FaeI	CATG	3 cut(s)	46, 208, 1032
FaqI	GGGAC	2 cut(s)	164, 505
FatI	CATG	3 cut(s)	42, 204, 1028
FauI	CCCGC	1 cut(s)	19
FauNDI	CATATG	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	4 cut(s)	49, 288, 317, 759
FokI	GGATG	3 cut(s)	696, 735, 764
Fsp4HI	GCNGC	4 cut(s)	49, 288, 317, 759
FspBI	CTAG	3 cut(s)	155, 215, 498
GlaI	GCGC	3 cut(s)	6, 367, 871
GluI	GCNGC	4 cut(s)	49, 288, 317, 759
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	2 cut(s)	501, 884
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	6 cut(s)	35, 98, 287, 598, 727, 861
HapII	CCGG	2 cut(s)	334, 876
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	3 cut(s)	7, 368, 872
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	46, 208, 1032
Hin6I	GCGC	3 cut(s)	5, 366, 870
HinP1I	GCGC	3 cut(s)	5, 366, 870
HindIII	AAGCTT	1 cut(s)	85
HinfI	GANTC	2 cut(s)	932, 979
HpaII	CCGG	2 cut(s)	334, 876
HphI	GGTGA	3 cut(s)	97, 577, 941
Hpy166II	GTNNAC	5 cut(s)	130, 210, 350, 454, 936
Hpy188I	TCNGA	4 cut(s)	74, 83, 252, 790
Hpy188III	TCNNGA	5 cut(s)	91, 215, 380, 401, 440
Hpy8I	GTNNAC	5 cut(s)	130, 210, 350, 454, 936
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	4 cut(s)	88, 410, 437, 723
HpyCH4III	ACNGT	4 cut(s)	127, 193, 779, 1005
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	3 cut(s)	430, 467, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 174, 309, 867
HpySE526I	ACGT	1 cut(s)	434
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	46, 208, 1032
HspAI	GCGC	3 cut(s)	5, 366, 870
Kzo9I	GATC	2 cut(s)	69, 988
LmnI	GCTCC	5 cut(s)	74, 382, 419, 520, 643
Lsp1109I	GCAGC	1 cut(s)	770
LweI	GCATC	3 cut(s)	250, 454, 558
MaeI	CTAG	3 cut(s)	155, 215, 498
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	4 cut(s)	103, 520, 705, 947
MalI	GATC	2 cut(s)	71, 990
MbiI	CCGCTC	1 cut(s)	162
MboI	GATC	2 cut(s)	69, 988
MboII	GAAGA	5 cut(s)	21, 73, 473, 489, 573
MfeI	CAATTG	1 cut(s)	540
MhlI	GDGCHC	1 cut(s)	517
MlsI	TGGCCA	1 cut(s)	727
MluCI	AATT	8 cut(s)	265, 540, 624, 633, 653, 732, 783, 822
MluNI	TGGCCA	1 cut(s)	727
MlyI	GAGTC	1 cut(s)	941
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	9 cut(s)	192, 286, 356, 609, 666, 748, 900, 964, 1002
Mox20I	TGGCCA	1 cut(s)	727
MscI	TGGCCA	1 cut(s)	727
MseI	TTAA	4 cut(s)	150, 615, 627, 996
Msp20I	TGGCCA	1 cut(s)	727
MspI	CCGG	2 cut(s)	334, 876
MspR9I	CCNGG	5 cut(s)	100, 424, 458, 741, 863
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	1 cut(s)	51
MvaI	CCWGG	5 cut(s)	100, 424, 458, 741, 863
MvnI	CGCG	3 cut(s)	7, 92, 274
MwoI	GCNNNNNNNGC	4 cut(s)	32, 174, 309, 867
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	2 cut(s)	69, 988
NlaIII	CATG	3 cut(s)	46, 208, 1032
NlaIV	GGNNCC	3 cut(s)	76, 421, 645
NmeAIII	GCCGAG	1 cut(s)	992
NmuCI	GTSAC	4 cut(s)	103, 520, 705, 947
NruI	TCGCGA	1 cut(s)	92
NspI	RCATGY	1 cut(s)	208
PaqCI	CACCTGC	1 cut(s)	667
PceI	AGGCCT	2 cut(s)	98, 598
PciI	ACATGT	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PctI	GAATGC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	979
PinAI	ACCGGT	1 cut(s)	875
PkrI	GCNGC	4 cut(s)	50, 289, 318, 760
PleI	GAGTC	1 cut(s)	940
PpsI	GAGTC	1 cut(s)	940
PscI	ACATGT	1 cut(s)	204
Psp6I	CCWGG	5 cut(s)	98, 422, 456, 739, 861
PspEI	GGTNACC	2 cut(s)	103, 947
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	5 cut(s)	98, 422, 456, 739, 861
PspN4I	GGNNCC	3 cut(s)	76, 421, 645
PspPI	GGNCC	1 cut(s)	33
RruI	TCGCGA	1 cut(s)	92
RsaI	GTAC	3 cut(s)	326, 455, 776
RsaNI	GTAC	3 cut(s)	325, 454, 775
SaqAI	TTAA	4 cut(s)	150, 615, 627, 996
SatI	GCNGC	4 cut(s)	49, 288, 317, 759
Sau3AI	GATC	2 cut(s)	69, 988
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	941
ScrFI	CCNGG	5 cut(s)	100, 424, 458, 741, 863
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	3 cut(s)	250, 454, 558
Sse9I	AATT	8 cut(s)	265, 540, 624, 633, 653, 732, 783, 822
SseBI	AGGCCT	2 cut(s)	98, 598
SsiI	CCGC	7 cut(s)	26, 48, 160, 274, 288, 317, 952
SspMI	CTAG	3 cut(s)	155, 215, 498
StuI	AGGCCT	2 cut(s)	98, 598
StyD4I	CCNGG	5 cut(s)	98, 422, 456, 739, 861
StyI	CCWWGG	2 cut(s)	56, 807
TaaI	ACNGT	4 cut(s)	127, 193, 779, 1005
TaiI	ACGT	1 cut(s)	437
TasI	AATT	8 cut(s)	265, 540, 624, 633, 653, 732, 783, 822
TatI	WGTACW	1 cut(s)	774
TauI	GCSGC	3 cut(s)	51, 290, 319
TfiI	GAWTC	1 cut(s)	979
Tru1I	TTAA	4 cut(s)	150, 615, 627, 996
Tru9I	TTAA	4 cut(s)	150, 615, 627, 996
TscAI	CASTG	4 cut(s)	196, 525, 784, 1010
TseFI	GTSAC	4 cut(s)	103, 520, 705, 947
TseI	GCWGC	1 cut(s)	758
Tsp45I	GTSAC	4 cut(s)	103, 520, 705, 947
TspDTI	ATGAA	2 cut(s)	404, 842
TspGWI	ACGGA	1 cut(s)	972
TspRI	CASTG	4 cut(s)	196, 525, 784, 1010
XagI	CCTNNNNNAGG	1 cut(s)	717
XapI	RAATTY	3 cut(s)	653, 732, 822
XbaI	TCTAGA	1 cut(s)	214
XceI	RCATGY	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	349
XspI	CTAG	3 cut(s)	155, 215, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.