AT1G79080

pentatricopeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012459
Physical Location & Seq
Reverse (-)
29746972 .. 29749085
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79080.1

Sequence Viewer

Length: 1731 bp
ATGTCGACTCTACTGAACTCAGTCTTATCCATGGCGTCACCGGAATCATCGCCGAGAAAAGCCGTAGGTTTTGTTTCCCACATCCCTTCTGGTTTCCTTCATTTCTCCTCCGTCAGTAAAGGTGTTGCTAGGGTTTTAGCTTCGACCCAGATAACATTATCCCCTAAAGACTCCGCCTTTACCATTACTGGATCCAGTTGGAAACCCGATTTGGATTCCGGGTCGTTTTCTGATGACCCGAGAAGCGACGAGCCGAATTTGAGCGATAGTTTCTCTCATCTAGAAAGTTTAGTCACGGGAGGGCATAAACCCAATGTAGCTCATTCTACTCAGCTCTTGTACGATCTCTGCAAAGCCAATAGATTGAAGAAAGCCATTCGTGTGATTGAGCTTATGGTTAGCTCCGGGATTATACCCGATGCATCTGCTTACACGTATTTGGTTAATCAGCTTTGTAAAAGAGGTAACGTTGGTTATGCGATGCAGCTTGTTGAGAAAATGGAAGATCATGGTTATCCTTCTAATACCGTTACTTACAATGCCTTGGTTCGAGGTCTTTGTATGCTTGGTAGCTTAAATCAAAGCTTACAGTTTGTTGAGAGGTTGATGCAGAAAGGCTTAGCTCCAAATGCTTTCACTTATTCTTTCTTGCTTGAAGCAGCTTATAAAGAACGAGGAACCGACGAAGCTGTGAAGCTCTTAGATGAGATCATTGTGAAAGGCGGTGAACCCAATTTGGTTAGCTATAATGTGCTGTTGACTGGTTTCTGTAAAGAAGGGAGAACAGACGATGCCATGGCGCTGTTTAGGGAATTACCTGCAAAAGGGTTTAAGGCAAATGTTGTGAGCTATAACATTTTGTTGAGGTGTTTGTGCTGTGATGGGAGGTGGGAGGAAGCGAATTCGCTCTTGGCTGAGATGGACGGTGGAGATCGAGCTCCTTCAGTTGTTACCTATAACATATTGATCAATTCGTTAGCTTTTCATGGAAGAACAGAGCAGGCACTGCAGGTTTTAAAGGAGATGAGCAAAGGAAATCATCAGTTTAGAGTCACTGCCACGAGCTATAATCCGGTGATCGCCCGTCTGTGCAAGGAAGGAAAAGTTGATCTTGTTGTGAAATGTCTAGACGAGATGATATACCGGCGTTGTAAACCAAACGAAGGAACGTACAATGCAATAGGTTCGTTATGCGAGCATAACAGCAAGGTGCAGGAAGCGTTTTACATAATACAGAGCTTAAGCAACAAGCAGAAATGCTGCACGCATGATTTCTACAAAAGCGTAATCACGAGTCTCTGCAGGAAAGGTAACACCTTTGCAGCGTTCCAGCTCTTGTACGAGATGACTAGGTGCGGGTTTGATCCCGATGCGCACACCTACTCGGCTTTGATCAGAGGGCTGTGTCTGGAAGGGATGTTTACAGGAGCCATGGAGGTTTTGTCGATAATGGAAGAGAGTGAGAATTGTAAACCTACAGTGGATAACTTTAACGCCATGATCCTAGGGTTGTGCAAGATAAGGAGGACAGATTTGGCAATGGAGGTGTTTGAGATGATGGTTGAGAAGAAGAGAATGCCGAATGAGACAACATATGCGATACTCGTTGAAGGGATAGCTCATGAGGATGAATTGGAGCTGGCTAAAGAAGTTCTTGATGAGCTACGATTGCGTAAGGTTATAGGACAGAACGCAGTAGATAGGATTGTAATGCAGTTCAATTTAGATTGA

Protein Analysis

576

Amino Acids

64.01

Weight (kDa)

6.12

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 105 - 153 1.9e-07 PPR repeat family
PPR_1 PF12854 136 - 168 1.6e-06 PPR repeat
PPR_2 PF13041 139 - 187 3.6e-11 PPR repeat family
PPR_long PF17177 143 - 307 1.6e-10 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 155 - 271 1.8e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 163 - 220 4e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 175 - 220 4.3e-09 PPR repeat family
PPR_2 PF13041 209 - 258 5.3e-10 PPR repeat family
PPR_3 PF13812 232 - 289 5.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 240 - 271 4e-11 PPR repeat
PPR_2 PF13041 244 - 292 8.4e-16 PPR repeat family
PPR PF01535 247 - 277 3.2e-07 PPR repeat
PPR_3 PF13812 268 - 324 1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 275 - 307 1.5e-08 PPR repeat
PPR_2 PF13041 280 - 327 5.2e-13 PPR repeat family
PPR PF01535 282 - 307 1e-05 PPR repeat
PPR_1 PF12854 314 - 343 2.9e-08 PPR repeat
PPR_2 PF13041 314 - 347 7.1e-08 PPR repeat family
PPR PF01535 317 - 344 4.6e-06 PPR repeat
PPR_2 PF13041 354 - 394 2.8e-09 PPR repeat family
PPR_2 PF13041 426 - 469 2.2e-11 PPR repeat family
PPR_3 PF13812 445 - 505 2.7e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 453 - 485 3.3e-07 PPR repeat
PPR_1 PF12854 489 - 521 5e-06 PPR repeat
PPR_2 PF13041 492 - 540 1.8e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79080
fragaria_vesca FvH4_3g15990
malus_domestica MD05G1216400.v1.1 MD10G1198700.v1.1
prunus_persica Prupe.4G143000_v2.0.a1
pyrus_communis pycom05g19870 pycom10g17140
rosa_chinensis RchiOBHm_Chr5g0026921
rosa_laevigata RLG00000032970
rosa_multiflora Rmu_co8463079.1_g000001 Rmu_sc0004223.1_g000006 Rmu_sc0008732.1_g000003
rosa_roxburghii Rroxscaffold_1G00052550
rosa_rugosa Rorug05G0095900
rosa_samantha Rh5AG189500 Rh5BG187100 Rh5CG206800 Rh5DG188800
rosa_wichuraiana Rw5G017240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
Acc16I TGCGCA 1 cut(s) 1374
Acc36I ACCTGC 2 cut(s) 826, 1000
AccI GTMKAC 1 cut(s) 5
AciI CCGC 3 cut(s) 174, 723, 1356
AclI AACGTT 1 cut(s) 468
AclWI GGATC 4 cut(s) 186, 199, 1358, 1495
AcsI RAATTY 2 cut(s) 256, 901
AcuI CTGAAG 1 cut(s) 927
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 3 cut(s) 341, 1172, 1340
AfiI CCNNNNNNNGG 2 cut(s) 824, 1163
AflII CTTAAG 1 cut(s) 1240
AflIII ACRYGT 1 cut(s) 432
AgsI TTSAA 4 cut(s) 367, 656, 1610, 1720
AjuI GAANNNNNNNTTGG 4 cut(s) 194, 226, 893, 925
Alw21I GWGCWC 1 cut(s) 940
Alw26I GTCTC 2 cut(s) 1301, 1580
AlwI GGATC 4 cut(s) 186, 199, 1358, 1495
AlwNI CAGNNNCTG 1 cut(s) 1006
Ama87I CYCGRG 1 cut(s) 238
ApeKI GCWGC 4 cut(s) 484, 659, 1260, 1322
ApoI RAATTY 2 cut(s) 256, 901
AspA2I CCTAGG 1 cut(s) 1504
AspLEI GCGC 2 cut(s) 802, 1375
AsuC2I CCSGG 2 cut(s) 220, 406
AsuHPI GGTGA 3 cut(s) 30, 737, 1087
AvaI CYCGRG 1 cut(s) 238
AvrII CCTAGG 1 cut(s) 1504
BamHI GGATCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 940
BauI CACGAG 2 cut(s) 1060, 1291
Bbv12I GWGCWC 1 cut(s) 940
BbvI GCAGC 4 cut(s) 496, 671, 1247, 1334
BccI CCATC 3 cut(s) 875, 913, 1552
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 4 cut(s) 407, 441, 1167, 1201
BclI TGATCA 2 cut(s) 966, 1392
BcnI CCSGG 2 cut(s) 220, 406
BcoDI GTCTC 2 cut(s) 1301, 1580
BfaI CTAG 5 cut(s) 129, 281, 1127, 1350, 1505
BfmI CTRYAG 3 cut(s) 1007, 1300, 1476
BfoI RGCGCY 1 cut(s) 803
BfrI CTTAAG 1 cut(s) 1240
BfuAI ACCTGC 2 cut(s) 826, 1000
BisI GCNGC 4 cut(s) 485, 660, 1261, 1323
BlnI CCTAGG 1 cut(s) 1504
BlpI GCTNAGC 1 cut(s) 619
BlsI GCNGC 4 cut(s) 486, 661, 1262, 1324
Bme1390I CCNGG 2 cut(s) 220, 406
BmeT110I CYCGRG 1 cut(s) 238
BmiI GGNNCC 3 cut(s) 193, 679, 1429
BmrFI CCNGG 2 cut(s) 220, 406
BmsI GCATC 6 cut(s) 409, 431, 471, 597, 781, 1360
Bpu1102I GCTNAGC 1 cut(s) 619
BpuMI CCSGG 2 cut(s) 220, 406
BsaAI YACGTR 1 cut(s) 435
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 5 cut(s) 30, 543, 795, 1431, 1504
BsaWI WCCGGW 2 cut(s) 40, 1072
BsaXI ACNNNNNCTCC 2 cut(s) 1427, 1457
Bsc4I CCNNNNNNNGG 2 cut(s) 824, 1163
Bse118I RCCGGY 1 cut(s) 1143
Bse1I ACTGG 3 cut(s) 193, 195, 766
Bse3DI GCAATG 1 cut(s) 1545
BseDI CCNNGG 5 cut(s) 30, 543, 795, 1431, 1504
BseGI GGATG 3 cut(s) 81, 1422, 1633
BseLI CCNNNNNNNGG 2 cut(s) 824, 1163
BseMI GCAATG 1 cut(s) 1545
BseMII CTCAG 3 cut(s) 33, 344, 906
BseNI ACTGG 3 cut(s) 193, 195, 766
BseRI GAGGAG 1 cut(s) 97
BseXI GCAGC 4 cut(s) 496, 671, 1247, 1334
BsgI GTGCAG 2 cut(s) 1232, 1246
BsiHKAI GWGCWC 1 cut(s) 940
BsiHKCI CYCGRG 1 cut(s) 238
BsiSI CCGG 5 cut(s) 41, 219, 405, 1073, 1144
BslI CCNNNNNNNGG 2 cut(s) 824, 1163
BsmAI GTCTC 2 cut(s) 1301, 1580
BsmI GAATGC 1 cut(s) 1581
BsoBI CYCGRG 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 940
Bsp1720I GCTNAGC 1 cut(s) 619
Bsp19I CCATGG 3 cut(s) 30, 795, 1431
BspACI CCGC 3 cut(s) 174, 723, 1356
BspCNI CTCAG 3 cut(s) 32, 343, 907
BspHI TCATGA 1 cut(s) 1621
BspLI GGNNCC 3 cut(s) 193, 679, 1429
BspMAI CTGCAG 2 cut(s) 1011, 1304
BspMI ACCTGC 2 cut(s) 826, 1000
BspPI GGATC 4 cut(s) 186, 199, 1358, 1495
BspTI CTTAAG 1 cut(s) 1240
BsrDI GCAATG 1 cut(s) 1545
BsrFI RCCGGY 1 cut(s) 1143
BsrI ACTGG 3 cut(s) 193, 195, 766
BssAI RCCGGY 1 cut(s) 1143
BssECI CCNNGG 5 cut(s) 30, 543, 795, 1431, 1504
BssNI GRCGYC 1 cut(s) 35
BssSI CACGAG 2 cut(s) 1060, 1291
BssT1I CCWWGG 5 cut(s) 30, 543, 795, 1431, 1504
Bst2BI CACGAG 2 cut(s) 1060, 1291
Bst4CI ACNGT 4 cut(s) 529, 591, 926, 1480
Bst6I CTCTTC 2 cut(s) 1449, 1565
BstACI GRCGYC 1 cut(s) 35
BstAFI CTTAAG 1 cut(s) 1240
BstAPI GCANNNNNTGC 1 cut(s) 1006
BstBAI YACGTR 1 cut(s) 435
BstC8I GCNNGC 4 cut(s) 1002, 1196, 1265, 1641
BstDEI CTNAG 5 cut(s) 19, 330, 619, 700, 915
BstDSI CCRYGG 3 cut(s) 30, 795, 1431
BstENI CCTNNNNNAGG 1 cut(s) 822
BstF5I GGATG 3 cut(s) 81, 1422, 1633
BstH2I RGCGCY 1 cut(s) 803
BstHHI GCGC 2 cut(s) 802, 1375
BstMAI GTCTC 2 cut(s) 1301, 1580
BstMWI GCNNNNNNNGC 3 cut(s) 629, 1006, 1669
BstSCI CCNGG 2 cut(s) 218, 404
BstSFI CTRYAG 3 cut(s) 1007, 1300, 1476
BstV1I GCAGC 4 cut(s) 496, 671, 1247, 1334
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BtgI CCRYGG 3 cut(s) 30, 795, 1431
BtgZI GCGATG 2 cut(s) 33, 494
BtsCI GGATG 3 cut(s) 81, 1422, 1633
BtsI GCAGTG 2 cut(s) 1004, 1053
BtsIMutI CAGTG 3 cut(s) 1004, 1053, 1485
BveI ACCTGC 2 cut(s) 826, 1000
Cac8I GCNNGC 4 cut(s) 1002, 1196, 1265, 1641
CaiI CAGNNNCTG 1 cut(s) 1006
CciI TCATGA 1 cut(s) 1621
CfoI GCGC 2 cut(s) 802, 1375
Cfr10I RCCGGY 1 cut(s) 1143
CseI GACGC 1 cut(s) 24
Csp6I GTAC 3 cut(s) 340, 1171, 1339
CviAII CATG 8 cut(s) 31, 509, 796, 986, 1268, 1432, 1498, 1622
CviQI GTAC 3 cut(s) 340, 1171, 1339
DdeI CTNAG 5 cut(s) 19, 330, 619, 700, 915
DraI TTTAAA 1 cut(s) 1017
Eam1104I CTCTTC 2 cut(s) 1449, 1565
EarI CTCTTC 2 cut(s) 1449, 1565
EciI GGCGGA 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 938
Eco130I CCWWGG 5 cut(s) 30, 543, 795, 1431, 1504
Eco24I GRGCYC 1 cut(s) 940
Eco53kI GAGCTC 1 cut(s) 938
Eco57I CTGAAG 1 cut(s) 927
Eco88I CYCGRG 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 938
EcoNI CCTNNNNNAGG 1 cut(s) 822
EcoRI GAATTC 1 cut(s) 901
EcoT14I CCWWGG 5 cut(s) 30, 543, 795, 1431, 1504
EcoT22I ATGCAT 1 cut(s) 424
EcoT38I GRGCYC 1 cut(s) 940
ErhI CCWWGG 5 cut(s) 30, 543, 795, 1431, 1504
FaeI CATG 8 cut(s) 34, 512, 799, 989, 1271, 1435, 1501, 1625
FalI AAGNNNNNCTT 4 cut(s) 1095, 1127, 1638, 1670
FatI CATG 8 cut(s) 30, 508, 795, 985, 1267, 1431, 1497, 1621
FauI CCCGC 1 cut(s) 1349
FauNDI CATATG 1 cut(s) 1594
FbaI TGATCA 2 cut(s) 966, 1392
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 485, 660, 1261, 1323
FokI GGATG 3 cut(s) 68, 1429, 1640
FriOI GRGCYC 1 cut(s) 940
Fsp4HI GCNGC 4 cut(s) 485, 660, 1261, 1323
FspAI RTGCGCAY 1 cut(s) 1374
FspBI CTAG 5 cut(s) 129, 281, 1127, 1350, 1505
FspI TGCGCA 1 cut(s) 1374
GlaI GCGC 2 cut(s) 801, 1374
GluI GCNGC 4 cut(s) 485, 660, 1261, 1323
HaeII RGCGCY 1 cut(s) 803
HapII CCGG 5 cut(s) 41, 219, 405, 1073, 1144
HgaI GACGC 1 cut(s) 24
HhaI GCGC 2 cut(s) 802, 1375
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 8 cut(s) 34, 512, 799, 989, 1271, 1435, 1501, 1625
Hin6I GCGC 2 cut(s) 800, 1373
HinP1I GCGC 2 cut(s) 800, 1373
HincII GTYRAC 2 cut(s) 6, 759
HindII GTYRAC 2 cut(s) 6, 759
HindIII AAGCTT 1 cut(s) 583
HinfI GANTC 6 cut(s) 7, 44, 170, 215, 1050, 1294
HpaII CCGG 5 cut(s) 41, 219, 405, 1073, 1144
HphI GGTGA 3 cut(s) 30, 737, 1087
Hpy166II GTNNAC 6 cut(s) 6, 728, 759, 1154, 1422, 1472
Hpy188I TCNGA 2 cut(s) 232, 1397
Hpy188III TCNNGA 7 cut(s) 281, 1127, 1291, 1367, 1409, 1622, 1655
Hpy8I GTNNAC 6 cut(s) 6, 728, 759, 1154, 1422, 1472
Hpy99I CGWCG 2 cut(s) 251, 686
HpyAV CCTTC 9 cut(s) 96, 107, 528, 770, 951, 1091, 1157, 1406, 1604
HpyCH4III ACNGT 4 cut(s) 529, 591, 926, 1480
HpyCH4IV ACGT 3 cut(s) 434, 468, 1169
HpyF10VI GCNNNNNNNGC 3 cut(s) 629, 1006, 1669
HpyF3I CTNAG 5 cut(s) 19, 330, 619, 700, 915
HpySE526I ACGT 3 cut(s) 434, 468, 1169
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 8 cut(s) 34, 512, 799, 989, 1271, 1435, 1501, 1625
HspAI GCGC 2 cut(s) 800, 1373
Ksp22I TGATCA 2 cut(s) 966, 1392
LmnI GCTCC 5 cut(s) 407, 628, 943, 1427, 1636
Lsp1109I GCAGC 4 cut(s) 496, 671, 1247, 1334
LweI GCATC 6 cut(s) 409, 431, 471, 597, 781, 1360
MaeI CTAG 5 cut(s) 129, 281, 1127, 1350, 1505
MaeII ACGT 3 cut(s) 434, 468, 1169
MaeIII GTNAC 7 cut(s) 36, 292, 464, 529, 949, 1051, 1310
MboII GAAGA 6 cut(s) 379, 515, 1002, 1466, 1579, 1582
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 940
MluCI AATT 8 cut(s) 256, 733, 812, 901, 970, 1465, 1631, 1720
MlyI GAGTC 3 cut(s) 164, 1059, 1303
MmeI TCCRAC 1 cut(s) 179
Mph1103I ATGCAT 1 cut(s) 424
MseI TTAA 6 cut(s) 444, 575, 831, 1016, 1241, 1491
MslI CAYNNNNRTG 2 cut(s) 380, 1626
MspCI CTTAAG 1 cut(s) 1240
MspI CCGG 5 cut(s) 41, 219, 405, 1073, 1144
MspR9I CCNGG 2 cut(s) 220, 406
Mva1269I GAATGC 1 cut(s) 1581
MwoI GCNNNNNNNGC 3 cut(s) 629, 1006, 1669
NciI CCSGG 2 cut(s) 220, 406
NcoI CCATGG 3 cut(s) 30, 795, 1431
NdeI CATATG 1 cut(s) 1594
NlaIII CATG 8 cut(s) 34, 512, 799, 989, 1271, 1435, 1501, 1625
NlaIV GGNNCC 3 cut(s) 193, 679, 1429
NmeAIII GCCGAG 2 cut(s) 78, 1364
NmuCI GTSAC 3 cut(s) 36, 292, 1051
NsbI TGCGCA 1 cut(s) 1374
NsiI ATGCAT 1 cut(s) 424
PagI TCATGA 1 cut(s) 1621
PctI GAATGC 1 cut(s) 1581
PfeI GAWTC 2 cut(s) 44, 215
PfoI TCCNGGA 1 cut(s) 404
PkrI GCNGC 4 cut(s) 486, 661, 1262, 1324
PleI GAGTC 3 cut(s) 164, 1058, 1302
PpsI GAGTC 3 cut(s) 164, 1058, 1302
Ppu21I YACGTR 1 cut(s) 435
PsiI TTATAA 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 940
Psp1406I AACGTT 1 cut(s) 468
PspN4I GGNNCC 3 cut(s) 193, 679, 1429
PstI CTGCAG 2 cut(s) 1011, 1304
PstNI CAGNNNCTG 1 cut(s) 1006
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 3 cut(s) 341, 1172, 1340
RsaNI GTAC 3 cut(s) 340, 1171, 1339
RseI CAYNNNNRTG 2 cut(s) 380, 1626
SacI GAGCTC 1 cut(s) 940
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 6 cut(s) 444, 575, 831, 1016, 1241, 1491
SatI GCNGC 4 cut(s) 485, 660, 1261, 1323
SchI GAGTC 3 cut(s) 164, 1059, 1303
ScrFI CCNGG 2 cut(s) 220, 406
SduI GDGCHC 1 cut(s) 940
SfaNI GCATC 6 cut(s) 409, 431, 471, 597, 781, 1360
SfcI CTRYAG 3 cut(s) 1007, 1300, 1476
SmiMI CAYNNNNRTG 2 cut(s) 380, 1626
SmlI CTYRAG 1 cut(s) 1240
SmoI CTYRAG 1 cut(s) 1240
Sse9I AATT 8 cut(s) 256, 733, 812, 901, 970, 1465, 1631, 1720
SsiI CCGC 3 cut(s) 174, 723, 1356
SspMI CTAG 5 cut(s) 129, 281, 1127, 1350, 1505
SstI GAGCTC 1 cut(s) 940
StyD4I CCNGG 2 cut(s) 218, 404
StyI CCWWGG 5 cut(s) 30, 543, 795, 1431, 1504
TaaI ACNGT 4 cut(s) 529, 591, 926, 1480
TaiI ACGT 3 cut(s) 437, 471, 1172
TaqI TCGA 5 cut(s) 5, 143, 550, 934, 1445
TasI AATT 8 cut(s) 256, 733, 812, 901, 970, 1465, 1631, 1720
TfiI GAWTC 2 cut(s) 44, 215
Tru1I TTAA 6 cut(s) 444, 575, 831, 1016, 1241, 1491
Tru9I TTAA 6 cut(s) 444, 575, 831, 1016, 1241, 1491
TscAI CASTG 3 cut(s) 1011, 1060, 1485
TseFI GTSAC 3 cut(s) 36, 292, 1051
TseI GCWGC 4 cut(s) 484, 659, 1260, 1322
Tsp45I GTSAC 3 cut(s) 36, 292, 1051
TspDTI ATGAA 3 cut(s) 89, 974, 1644
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 3 cut(s) 1011, 1060, 1485
Vha464I CTTAAG 1 cut(s) 1240
XagI CCTNNNNNAGG 1 cut(s) 822
XapI RAATTY 2 cut(s) 256, 901
XbaI TCTAGA 2 cut(s) 280, 1126
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XmaJI CCTAGG 1 cut(s) 1504
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 5 cut(s) 129, 281, 1127, 1350, 1505
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.