Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012459

Physical Location & Seq

Genomic Coordinates Reverse (-)

8518529 .. 8525984

Gene Structure 7456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0095900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3618 bp

ATGAGTTTGAGCTGCAATTCTGTACCAGAGGCTGAGCCCATGGAACCAGAGACTCCAGATGAAATTCGCCGAGCTTCGCTGGACTTCGATCACTGGACCTCACTCATTTCGCAGATAGAGAATTCATATCCCGATGACGTAGAGAAAATATGTTCAGTGTATGATTCTTTCTTGGCCGAGTTTCCGTTGTGCCATGGATATTGGAGGAGGTATGCTGAGCATAAGATGCGTTTGTGCTCCATTGACAAGGTTGTTGAGGTCTTTGAACGAGCTCTGCAAGCTGCAACCTACTGTGTCCCGCTGTGGGTGGATTACTGTGTCTTCAGTATGTCCTTTTTCGAAGATCCTTCCGATATTCGCAGACTATTTAAAAGAGGGATGTCCTTTGTTCGAAAGGACTATGGGTGCTATACTTTGTGGGACAAATACATTGAATTTGAGTACTCTCAGCAGGAATGGAGTTCACTGGCCCTGATTTACATCCAAGCTCTTAGATTCCCTACCAAGAAGTTGCATATTTATTATGCGAGTTTGAAGAAGTTGGCTACCTTGTTTGAAGAGGAGATGAAAAGCCAGAGTAATTCTACTGTGGATTTGCAGTCAGAAGCTTTATTTGATGGTGAAGTCCCTAGGTTTTTTGGAGATGATGAAATTTCTCTTGTAGTCAAAGACCTTCTGGATCCAGCAATTGGCTCAGGAAGGTCTAAAGCACTGCAAAGATACATATGTATTGGGAAACAGTTGTATCACGAAGCATGCCAGCTTGATGAAAAGATTGGTACTTTTGAGATTAATATAAGGAGGTCTTACTTCCATGTAAAGGAGCTTGATGCGGGTCAGTTGGAGAATTGGCATCGCTATCTGGACCATGTTGAGATGCAAGGGGATTTTGATTGGGCAGTGAAGCTTTACGAGAGGTGCTTGATTCCCTGTGCTAATTACCCCGAGTTTTGGATGCGTTATGTGGATTTCATGGAAATCAATGGAGGAAGAGAAATTGCAAACTATTCTCTTGACCGAGCAACCCAAATATTTGTGAAGAGAGTGTCGGTGATTCATCTTTTGAATGCCAAGTTTAAGGAGCAAATAGGAGATGTACTTGGTGCCCGTGCGGCTCTTCTTCAATGTAATGCAGAGTCAGATACACACTTCGTTAAGAATGTTATCTTAAAGGCTAATATGGAAAAACGTTTGGGAAATTTCACAGCAGCTTCCACTATATTCAGAGAAGCTCTAGCAATGGCTGCAGAGAAGAAACAGTCGCATACTCTTCCTATTCTATATGTTCATTTCTCTCGCCTTACATTCATGATGACTGATAGTGCAGATGCTGCACGAGATGTCTTGATAGATGGCATCAAACAATTGCCTCACTGCAAAGTACTTCTAGAGGAGTTGATAAAGTTTGCAATGATGAATGGAGGGAAGCAGCACATAAATGTGATAGACTCTGTTGTAACCCGTGCTATATCTCAGGAATCAGGAGTATGCAATGGTCTGAATGCAAAAGATGCTGAGGATATTTCAAGCTTATTTTTAGAGTTTGTTGACCTCTGTGGAACCATCCATGAAGTAAGAAAGGTGTGGACTCGGCATGTACGATTGTTCCCTTCTTCCATTAGGCCATCTTCCTTGGGTCAGCAGTCTGCCTTTAATGTTTATGATCAGCAAGCTACATTCACAAAGTCTTTGAATTTGTCTAGAGAAAAAGAGGAAACTTCTGCTGCTATGACTCAGCAGCCATCTAGAGATTGTACTTCTGACTCCATGATTGAGCTCCCGTTGCATGATGAAGAAATGTTATTGCCAGAAAATCATACTAAAGAGTGTGGCCAGGCATACCAGCTATCAGACCAGACATTGTCATCAAAACAATTTGAAAATCTACAGGAAAGATTGCAGCTAACATCTCCGGAAGTTTCAAGAGAGCAGTCCCCAGCTAATGCACCAGAAGCATATATATCCTCCACCGTGGTAGAAGTGAATCTGGTATCTCAGGAAGTATCTGACGAGGCCCCAGAAAATGCCCCTGTAGCAGAAGTGAAACAGGTATCCCGGGAAGTTTCTGAAGAGGCTGCAGAAGTGAAAAAGGTATCTCGGGAAGTTTCTGAGGAGCCCACAGAAAATATCCTTGTAGTAGAAGAGGAAAAAGTATCTCAGGAAGTTTCCGAGGAGGCCAGAGAAAACATCCCTAAACCAAAGATGTCGTCTGTAGAATTAGGATTTCAAGTTGCTGAAGGAAATGATTCTATAGAATCTTCACAAGAAAACACCATGGGAAGCAATGCTGATCGAGAGTGTGACTATAAGAGTGAACAAGACCCAAAGCCACTGTCCTTGGAGAGTCTTTCTTTGAATTCCCAGGAAAATACAAATTTGGATTTAGTATCCTGCACTTCTCCCAAGTCTGAAGCTTCTCCAGAAACCTGTACTTCAAATGGAAAGAAGCTAGAAAGTGATTGCAACTCTGATCAAGACTCTTATATGCACAACCCACGAAATGGTAGATCGTTAGAATCAGCTGGAAATGAATTAGTCAATGCTATGCCTATCCCGGTGTTTTCTCAGCCGCCTGCAAATAGTTATGGAGACTGGAGTCAAATTAATCGTTCTGATAAAGTTGGTAAAGATTCCAAATTGGGCTTTCGGATGCAGTTACAAAGAAAATCACATCCACAGCAGCATGTTCCTCCACAGAAATACCCGCGAACTGAAGCAGGTCATCCAATGCCTGCGAGTCAAGGTCACCCCTCTATATTAGCACCTTTACAAAACCAACAAATTCAGCAAGGCAGCCAGCAGGCCCAGCATCACAATCAGTATCAGGTAGCAAGTGGTCATGCTAATATAGCAGCACCTAATTCCGGGCCTATACCAAATGTACAAGCCGCCAATGATGCCTCTTCATCTCAGTCTCTATTGCCTGTCCAACCTGTTGCTCCACAGATGCCTCAGTCATCAGTATTAGGCAATGGGCAGTATGCGATGCAGAATCCTCAAGCATATAATCAGATGTGGCAATATTATTACTACCAGCAGCAGCAATCCCTTCTGCAACCACAGCAGCATCATCCCCAGCAGCAGCAGCAGCAGTTGTTATTGCAACAGTATCAGCAGCAGCAGCAACTTCAACAATATTATGTTCAGATGCAACAGCAACAACTTCTTTTCCAACAACAGCAGCAAATTCAACTAACACAGCAACAACTTCCTTTGCAACAACAGCAACAACTTCCTTTGCAACAACAACAGCAATCTCAAGTACTAAAGCAGCTTCCTTTGCAAGAGCAGCAGCAATTTCAGCAACTACAGCAACAAATTCAGCAATTTCAACAACTGCAGCAACAACTTCCTGTGCAACAACAACAACAATTTCCGTCGCAACAACAATACAATCCGCAATTGCAATTACAACAACAGCATCCATTCTATGTGCATAAGCATCAACAGCCACTCCAACAACAATCACATCTACAGGAACAACATCAAATCAATCAGTCATCAATTCAGCAGAACTACTCACACCATCAGGATCAAGCACAAAATTCAGATATTCATGGTGGGACAGTCATATCCTCCTTATCTCCTCACAGCCCAGTAGAACCTCCCCAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

1205

Amino Acids

137.72

Weight (kDa)

5.25

Isoelectric Point (pI)

69.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Suf	PF05843	20 - 146	5.6e-10	Suppressor of forked protein (Suf)
HAT_Syf1_CNRKL1_N	PF23233	20 - 162	1.1e-07	Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N	PF23240	21 - 179	1.7e-47	PRP39 N-terminal HAT repeat
HAT_PRP39_C	PF23241	258 - 397	3.4e-41	PRP39 C-terminal HAT repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79080
fragaria_vesca	FvH4_3g15990
malus_domestica	MD05G1216400.v1.1 MD10G1198700.v1.1
prunus_persica	Prupe.4G143000_v2.0.a1
pyrus_communis	pycom05g19870 pycom10g17140
rosa_chinensis	RchiOBHm_Chr5g0026921
rosa_laevigata	RLG00000032970
rosa_multiflora	Rmu_co8463079.1_g000001 Rmu_sc0004223.1_g000006 Rmu_sc0008732.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052550
rosa_rugosa	Rorug05G0095900
rosa_samantha	Rh5AG189500 Rh5BG187100 Rh5CG206800 Rh5DG188800
rosa_wichuraiana	Rw5G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2708
AccB1I	GGYRCC	1 cut(s)	1103
AccB7I	CCANNNNNTGG	2 cut(s)	689, 2501
AccII	CGCG	1 cut(s)	2707
AccIII	TCCGGA	1 cut(s)	1912
AciI	CCGC	7 cut(s)	299, 833, 1112, 2570, 2705, 2889, 3398
AclI	AACGTT	1 cut(s)	1189
AclWI	GGATC	4 cut(s)	338, 674, 687, 3540
AcoI	YGGCCR	2 cut(s)	174, 1831
AcuI	CTGAAG	5 cut(s)	307, 2088, 2256, 2430, 2733
AfiI	CCNNNNNNNGG	6 cut(s)	304, 689, 820, 951, 2501, 2864
AjnI	CCWGG	2 cut(s)	1833, 2361
Alw21I	GWGCWC	3 cut(s)	239, 274, 1779
Alw26I	GTCTC	3 cut(s)	44, 2583, 2919
AlwI	GGATC	4 cut(s)	338, 674, 687, 3540
AlwNI	CAGNNNCTG	2 cut(s)	32, 1331
Ama87I	CYCGRG	3 cut(s)	944, 2055, 2097
Aor13HI	TCCGGA	1 cut(s)	1912
AoxI	GGCC	8 cut(s)	174, 468, 1622, 1831, 2013, 2175, 2802, 2867
ArsI	GACNNNNNNTTYG	4 cut(s)	2192, 2224, 2318, 2350
AseI	ATTAAT	2 cut(s)	792, 2604
Asp700I	GAANNNNTTC	1 cut(s)	2245
AspA2I	CCTAGG	1 cut(s)	629
AspS9I	GGNCC	6 cut(s)	96, 469, 865, 2014, 2803, 2867
AsuC2I	CCSGG	4 cut(s)	2056, 2057, 2555, 2866
AsuHPI	GGTGA	3 cut(s)	632, 1063, 2738
AsuII	TTCGAA	2 cut(s)	339, 391
AvaI	CYCGRG	3 cut(s)	944, 2055, 2097
AvaII	GGWCC	2 cut(s)	96, 865
AvrII	CCTAGG	1 cut(s)	629
BaeGI	GKGCMC	1 cut(s)	1108
BaeI	ACNNNNGTAYC	4 cut(s)	712, 728, 745, 761
BalI	TGGCCA	1 cut(s)	1833
BamHI	GGATCC	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	1103
BanII	GRGCYC	4 cut(s)	39, 274, 1779, 2118
BauI	CACGAG	1 cut(s)	1335
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	3 cut(s)	239, 274, 1779
BbvCI	CCTCAGC	1 cut(s)	1515
BccI	CCATC	6 cut(s)	611, 1346, 1571, 1633, 1750, 3534
BciT130I	CCWGG	2 cut(s)	1835, 2363
BciVI	GTATCC	2 cut(s)	2062, 2398
BclI	TGATCA	2 cut(s)	1663, 2470
BcnI	CCSGG	4 cut(s)	2056, 2057, 2555, 2866
BcoDI	GTCTC	3 cut(s)	44, 2583, 2919
BfaI	CTAG	6 cut(s)	630, 1235, 1388, 1701, 1746, 2450
BfmI	CTRYAG	9 cut(s)	1245, 1886, 2031, 2076, 2211, 2250, 3308, 3338, 3473
BfuAI	ACCTGC	1 cut(s)	2708
BfuI	GTATCC	2 cut(s)	2062, 2398
BglI	GCCNNNNNGGC	1 cut(s)	1112
BlnI	CCTAGG	1 cut(s)	629
BlpI	GCTNAGC	2 cut(s)	33, 216
BmcAI	AGTACT	3 cut(s)	443, 1383, 3264
Bme1390I	CCNGG	6 cut(s)	1835, 2056, 2057, 2363, 2555, 2866
Bme18I	GGWCC	2 cut(s)	96, 865
BmeT110I	CYCGRG	3 cut(s)	944, 2055, 2097
BmgT120I	GGNCC	6 cut(s)	96, 469, 865, 2014, 2803, 2867
BmiI	GGNNCC	6 cut(s)	45, 681, 1105, 1561, 2016, 2115
BmrFI	CCNGG	6 cut(s)	1835, 2056, 2057, 2363, 2555, 2866
BmrI	ACTGGG	1 cut(s)	3590
BmuI	ACTGGG	1 cut(s)	3590
BoxI	GACNNNNGTC	1 cut(s)	2595
BpiI	GAAGAC	1 cut(s)	313
BpmI	CTGGAG	3 cut(s)	39, 2403, 2614
Bpu10I	CCTNAGC	2 cut(s)	694, 1515
Bpu1102I	GCTNAGC	2 cut(s)	33, 216
Bpu14I	TTCGAA	2 cut(s)	339, 391
BpuEI	CTTGAG	2 cut(s)	2982, 3243
BpuMI	CCSGG	4 cut(s)	2056, 2057, 2555, 2866
BsaBI	GATNNNNATC	1 cut(s)	479
BsaWI	WCCGGW	1 cut(s)	1912
BsaXI	ACNNNNNCTCC	2 cut(s)	3438, 3468
Bsc4I	CCNNNNNNNGG	6 cut(s)	304, 689, 820, 951, 2501, 2864
Bse1I	ACTGG	4 cut(s)	98, 471, 2597, 3596
Bse3DI	GCAATG	5 cut(s)	1245, 1416, 1498, 2290, 2977
Bse8I	GATNNNNATC	1 cut(s)	479
BseAI	TCCGGA	1 cut(s)	1912
BseBI	CCWGG	2 cut(s)	1835, 2363
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	6 cut(s)	304, 689, 820, 951, 2501, 2864
BseMI	GCAATG	5 cut(s)	1245, 1416, 1498, 2290, 2977
BseNI	ACTGG	4 cut(s)	98, 471, 2597, 3596
BseRI	GAGGAG	6 cut(s)	220, 575, 1406, 2126, 2186, 3576
BseSI	GKGCMC	1 cut(s)	1108
BseYI	CCCAGC	3 cut(s)	1936, 2805, 3075
BsgI	GTGCAG	3 cut(s)	1317, 1344, 2377
Bsh1236I	CGCG	1 cut(s)	2707
BshFI	GGCC	8 cut(s)	176, 470, 1624, 1833, 2015, 2177, 2804, 2869
BshNI	GGYRCC	1 cut(s)	1103
BsiHKAI	GWGCWC	3 cut(s)	239, 274, 1779
BsiHKCI	CYCGRG	3 cut(s)	944, 2055, 2097
BsiSI	CCGG	4 cut(s)	1913, 2056, 2555, 2865
BslFI	GGGAC	5 cut(s)	281, 434, 611, 1918, 3577
BslI	CCNNNNNNNGG	6 cut(s)	304, 689, 820, 951, 2501, 2864
BsmAI	GTCTC	3 cut(s)	44, 2583, 2919
BsmFI	GGGAC	5 cut(s)	281, 434, 611, 1918, 3577
BsmI	GAATGC	2 cut(s)	1072, 1507
BsnI	GGCC	8 cut(s)	176, 470, 1624, 1833, 2015, 2177, 2804, 2869
BsoBI	CYCGRG	3 cut(s)	944, 2055, 2097
Bsp119I	TTCGAA	2 cut(s)	339, 391
Bsp1286I	GDGCHC	6 cut(s)	39, 239, 274, 1108, 1779, 2118
Bsp13I	TCCGGA	1 cut(s)	1912
Bsp1407I	TGTACA	1 cut(s)	2881
Bsp143I	GATC	8 cut(s)	88, 343, 679, 1663, 2290, 2470, 2507, 3532
Bsp1720I	GCTNAGC	2 cut(s)	33, 216
Bsp19I	CCATGG	3 cut(s)	39, 193, 2274
BspACI	CCGC	7 cut(s)	299, 833, 1112, 2570, 2705, 2889, 3398
BspANI	GGCC	8 cut(s)	176, 470, 1624, 1833, 2015, 2177, 2804, 2869
BspEI	TCCGGA	1 cut(s)	1912
BspFNI	CGCG	1 cut(s)	2707
BspHI	TCATGA	1 cut(s)	1308
BspLI	GGNNCC	6 cut(s)	45, 681, 1105, 1561, 2016, 2115
BspMAI	CTGCAG	3 cut(s)	1249, 2080, 3342
BspMI	ACCTGC	1 cut(s)	2708
BspPI	GGATC	4 cut(s)	338, 674, 687, 3540
BspQI	GCTCTTC	1 cut(s)	1122
BspT104I	TTCGAA	2 cut(s)	339, 391
BspT107I	GGYRCC	1 cut(s)	1103
BsrDI	GCAATG	5 cut(s)	1245, 1416, 1498, 2290, 2977
BsrGI	TGTACA	1 cut(s)	2881
BsrI	ACTGG	4 cut(s)	98, 471, 2597, 3596
BssMI	GATC	8 cut(s)	88, 343, 679, 1663, 2290, 2470, 2507, 3532
BssSI	CACGAG	1 cut(s)	1335
BssT1I	CCWWGG	6 cut(s)	39, 193, 629, 1632, 2274, 2337
Bst2BI	CACGAG	1 cut(s)	1335
Bst2UI	CCWGG	2 cut(s)	1835, 2363
Bst4CI	ACNGT	9 cut(s)	293, 317, 589, 741, 1260, 1972, 2334, 3108, 3568
Bst6I	CTCTTC	8 cut(s)	552, 985, 1034, 1122, 1275, 2064, 2136, 2908
BstAPI	GCANNNNNTGC	4 cut(s)	226, 1244, 1331, 1511
BstAUI	TGTACA	1 cut(s)	2881
BstBI	TTCGAA	2 cut(s)	339, 391
BstC8I	GCNNGC	8 cut(s)	279, 757, 761, 1671, 2574, 2733, 2798, 2802
BstDSI	CCRYGG	4 cut(s)	39, 193, 1971, 2274
BstEII	GGTNACC	1 cut(s)	2744
BstFNI	CGCG	1 cut(s)	2707
BstKTI	GATC	8 cut(s)	91, 346, 682, 1666, 2293, 2473, 2510, 3535
BstMAI	GTCTC	3 cut(s)	44, 2583, 2919
BstMBI	GATC	8 cut(s)	88, 343, 679, 1663, 2290, 2470, 2507, 3532
BstNI	CCWGG	2 cut(s)	1835, 2363
BstNSI	RCATGY	3 cut(s)	759, 1598, 2687
BstPAI	GACNNNNGTC	1 cut(s)	2595
BstPI	GGTNACC	1 cut(s)	2744
BstSCI	CCNGG	6 cut(s)	1833, 2054, 2055, 2361, 2553, 2864
BstSFI	CTRYAG	9 cut(s)	1245, 1886, 2031, 2076, 2211, 2250, 3308, 3338, 3473
BstSLI	GKGCMC	1 cut(s)	1108
BstUI	CGCG	1 cut(s)	2707
BstV2I	GAAGAC	1 cut(s)	313
BstX2I	RGATCY	2 cut(s)	343, 679
BstYI	RGATCY	2 cut(s)	343, 679
BsuI	GTATCC	2 cut(s)	2062, 2398
BsuRI	GGCC	8 cut(s)	176, 470, 1624, 1833, 2015, 2177, 2804, 2869
BtgI	CCRYGG	4 cut(s)	39, 193, 1971, 2274
BtgZI	GCGATG	2 cut(s)	839, 2999
BtsI	GCAGTG	3 cut(s)	710, 906, 1372
BtsIMutI	CAGTG	7 cut(s)	91, 162, 464, 710, 906, 1372, 2330
BveI	ACCTGC	1 cut(s)	2708
Cac8I	GCNNGC	8 cut(s)	279, 757, 761, 1671, 2574, 2733, 2798, 2802
CaiI	CAGNNNCTG	2 cut(s)	32, 1331
CciI	TCATGA	1 cut(s)	1308
Cfr13I	GGNCC	6 cut(s)	96, 469, 865, 2014, 2803, 2867
Cfr9I	CCCGGG	1 cut(s)	2055
CspCI	CAANNNNNGTGG	2 cut(s)	2319, 2354
DpnI	GATC	8 cut(s)	90, 345, 681, 1665, 2292, 2472, 2509, 3534
DpnII	GATC	8 cut(s)	88, 343, 679, 1663, 2290, 2470, 2507, 3532
DraI	TTTAAA	1 cut(s)	370
EaeI	YGGCCR	2 cut(s)	174, 1831
Eam1104I	CTCTTC	8 cut(s)	552, 985, 1034, 1122, 1275, 2064, 2136, 2908
EarI	CTCTTC	8 cut(s)	552, 985, 1034, 1122, 1275, 2064, 2136, 2908
Ecl136II	GAGCTC	2 cut(s)	272, 1777
Eco130I	CCWWGG	6 cut(s)	39, 193, 629, 1632, 2274, 2337
Eco24I	GRGCYC	4 cut(s)	39, 274, 1779, 2118
Eco47I	GGWCC	2 cut(s)	96, 865
Eco53kI	GAGCTC	2 cut(s)	272, 1777
Eco57I	CTGAAG	5 cut(s)	307, 2088, 2256, 2430, 2733
Eco88I	CYCGRG	3 cut(s)	944, 2055, 2097
Eco91I	GGTNACC	1 cut(s)	2744
EcoICRI	GAGCTC	2 cut(s)	272, 1777
EcoO109I	RGGNCCY	1 cut(s)	2014
EcoO65I	GGTNACC	1 cut(s)	2744
EcoRI	GAATTC	2 cut(s)	121, 2356
EcoRII	CCWGG	2 cut(s)	1833, 2361
EcoT14I	CCWWGG	6 cut(s)	39, 193, 629, 1632, 2274, 2337
EcoT38I	GRGCYC	4 cut(s)	39, 274, 1779, 2118
ErhI	CCWWGG	6 cut(s)	39, 193, 629, 1632, 2274, 2337
FalI	AAGNNNNNCTT	2 cut(s)	790, 822
FaqI	GGGAC	5 cut(s)	281, 434, 611, 1918, 3577
FauI	CCCGC	3 cut(s)	306, 826, 2712
FauNDI	CATATG	1 cut(s)	725
FbaI	TGATCA	2 cut(s)	1663, 2470
FriOI	GRGCYC	4 cut(s)	39, 274, 1779, 2118
FspBI	CTAG	6 cut(s)	630, 1235, 1388, 1701, 1746, 2450
GsaI	CCCAGC	3 cut(s)	1940, 2809, 3079
GsuI	CTGGAG	3 cut(s)	39, 2403, 2614
HaeIII	GGCC	8 cut(s)	176, 470, 1624, 1833, 2015, 2177, 2804, 2869
HapII	CCGG	4 cut(s)	1913, 2056, 2555, 2865
HincII	GTYRAC	1 cut(s)	1549
HindII	GTYRAC	1 cut(s)	1549
HindIII	AAGCTT	4 cut(s)	606, 905, 1528, 2412
HpaII	CCGG	4 cut(s)	1913, 2056, 2555, 2865
HphI	GGTGA	3 cut(s)	632, 1063, 2738
Hpy166II	GTNNAC	4 cut(s)	464, 1549, 1587, 2315
Hpy8I	GTNNAC	4 cut(s)	464, 1549, 1587, 2315
Hpy99I	CGWCG	1 cut(s)	3382
HpyAV	CCTTC	6 cut(s)	357, 683, 693, 1620, 2231, 3059
HpyCH4III	ACNGT	9 cut(s)	293, 317, 589, 741, 1260, 1972, 2334, 3108, 3568
HpyCH4IV	ACGT	2 cut(s)	138, 1189
HpySE526I	ACGT	2 cut(s)	138, 1189
Kpn2I	TCCGGA	1 cut(s)	1912
Ksp22I	TGATCA	2 cut(s)	1663, 2470
Kzo9I	GATC	8 cut(s)	88, 343, 679, 1663, 2290, 2470, 2507, 3532
LguI	GCTCTTC	1 cut(s)	1122
LmnI	GCTCC	6 cut(s)	242, 823, 1081, 1782, 2113, 2944
MaeI	CTAG	6 cut(s)	630, 1235, 1388, 1701, 1746, 2450
MaeII	ACGT	2 cut(s)	138, 1189
MaeIII	GTNAC	4 cut(s)	1456, 2300, 2655, 2744
MalI	GATC	8 cut(s)	90, 345, 681, 1665, 2292, 2472, 2509, 3534
MboI	GATC	8 cut(s)	88, 343, 679, 1663, 2290, 2470, 2507, 3532
MfeI	CAATTG	3 cut(s)	687, 1364, 3401
MflI	RGATCY	2 cut(s)	343, 679
MhlI	GDGCHC	6 cut(s)	39, 239, 274, 1108, 1779, 2118
MlsI	TGGCCA	1 cut(s)	1833
MluNI	TGGCCA	1 cut(s)	1833
MmeI	TCCRAC	4 cut(s)	822, 2953, 3196, 3481
Mox20I	TGGCCA	1 cut(s)	1833
MroI	TCCGGA	1 cut(s)	1912
MroXI	GAANNNNTTC	1 cut(s)	2245
MscI	TGGCCA	1 cut(s)	1833
MseI	TTAA	7 cut(s)	369, 792, 1077, 1155, 1169, 1653, 2604
MslI	CAYNNNNRTG	2 cut(s)	1437, 1439
Msp20I	TGGCCA	1 cut(s)	1833
MspA1I	CMGCKG	2 cut(s)	301, 2522
MspI	CCGG	4 cut(s)	1913, 2056, 2555, 2865
MspR9I	CCNGG	6 cut(s)	1835, 2056, 2057, 2363, 2555, 2866
MunI	CAATTG	3 cut(s)	687, 1364, 3401
Mva1269I	GAATGC	2 cut(s)	1072, 1507
MvaI	CCWGG	2 cut(s)	1835, 2363
MvnI	CGCG	1 cut(s)	2707
NciI	CCSGG	4 cut(s)	2056, 2057, 2555, 2866
NcoI	CCATGG	3 cut(s)	39, 193, 2274
NdeI	CATATG	1 cut(s)	725
NdeII	GATC	8 cut(s)	88, 343, 679, 1663, 2290, 2470, 2507, 3532
NlaIV	GGNNCC	6 cut(s)	45, 681, 1105, 1561, 2016, 2115
NmeAIII	GCCGAG	3 cut(s)	95, 202, 1570
NmuCI	GTSAC	2 cut(s)	2300, 2744
NspI	RCATGY	3 cut(s)	759, 1598, 2687
NspV	TTCGAA	2 cut(s)	339, 391
PaeI	GCATGC	1 cut(s)	759
PagI	TCATGA	1 cut(s)	1308
PciSI	GCTCTTC	1 cut(s)	1122
PcsI	WCGNNNNNNNCGW	1 cut(s)	1597
PctI	GAATGC	2 cut(s)	1072, 1507
PdmI	GAANNNNTTC	1 cut(s)	2245
PflFI	GACNNNGTC	1 cut(s)	1861
PflMI	CCANNNNNTGG	2 cut(s)	689, 2501
PshAI	GACNNNNGTC	1 cut(s)	2595
PshBI	ATTAAT	2 cut(s)	792, 2604
Psp124BI	GAGCTC	2 cut(s)	274, 1779
Psp1406I	AACGTT	1 cut(s)	1189
Psp6I	CCWGG	2 cut(s)	1833, 2361
PspEI	GGTNACC	1 cut(s)	2744
PspFI	CCCAGC	3 cut(s)	1936, 2805, 3075
PspGI	CCWGG	2 cut(s)	1833, 2361
PspN4I	GGNNCC	6 cut(s)	45, 681, 1105, 1561, 2016, 2115
PspPI	GGNCC	6 cut(s)	96, 469, 865, 2014, 2803, 2867
PstI	CTGCAG	3 cut(s)	1249, 2080, 3342
PstNI	CAGNNNCTG	2 cut(s)	32, 1331
PsuI	RGATCY	2 cut(s)	343, 679
PsyI	GACNNNGTC	1 cut(s)	1861
PvuII	CAGCTG	1 cut(s)	2522
RseI	CAYNNNNRTG	2 cut(s)	1437, 1439
SacI	GAGCTC	2 cut(s)	274, 1779
SapI	GCTCTTC	1 cut(s)	1122
SaqAI	TTAA	7 cut(s)	369, 792, 1077, 1155, 1169, 1653, 2604
Sau3AI	GATC	8 cut(s)	88, 343, 679, 1663, 2290, 2470, 2507, 3532
Sau96I	GGNCC	6 cut(s)	96, 469, 865, 2014, 2803, 2867
ScaI	AGTACT	3 cut(s)	443, 1383, 3264
ScrFI	CCNGG	6 cut(s)	1835, 2056, 2057, 2363, 2555, 2866
SduI	GDGCHC	6 cut(s)	39, 239, 274, 1108, 1779, 2118
SfcI	CTRYAG	9 cut(s)	1245, 1886, 2031, 2076, 2211, 2250, 3308, 3338, 3473
SfuI	TTCGAA	2 cut(s)	339, 391
SinI	GGWCC	2 cut(s)	96, 865
SmaI	CCCGGG	1 cut(s)	2057
SmiMI	CAYNNNNRTG	2 cut(s)	1437, 1439
SmlI	CTYRAG	2 cut(s)	2997, 3258
SmoI	CTYRAG	2 cut(s)	2997, 3258
SphI	GCATGC	1 cut(s)	759
SsiI	CCGC	7 cut(s)	299, 833, 1112, 2570, 2705, 2889, 3398
SspI	AATATT	3 cut(s)	1032, 3023, 3137
SspMI	CTAG	6 cut(s)	630, 1235, 1388, 1701, 1746, 2450
SstI	GAGCTC	2 cut(s)	274, 1779
StyD4I	CCNGG	6 cut(s)	1833, 2054, 2055, 2361, 2553, 2864
StyI	CCWWGG	6 cut(s)	39, 193, 629, 1632, 2274, 2337
TaaI	ACNGT	9 cut(s)	293, 317, 589, 741, 1260, 1972, 2334, 3108, 3568
TaiI	ACGT	2 cut(s)	141, 1192
TaqI	TCGA	4 cut(s)	87, 339, 391, 2293
TaqII	GACCGA	1 cut(s)	1032
TatI	WGTACW	7 cut(s)	441, 1096, 1381, 1754, 2429, 2881, 3262
TauI	GCSGC	3 cut(s)	1115, 2572, 2891
Tru1I	TTAA	7 cut(s)	369, 792, 1077, 1155, 1169, 1653, 2604
Tru9I	TTAA	7 cut(s)	369, 792, 1077, 1155, 1169, 1653, 2604
TscAI	CASTG	7 cut(s)	98, 162, 471, 717, 906, 1379, 2337
TseFI	GTSAC	2 cut(s)	2300, 2744
Tsp45I	GTSAC	2 cut(s)	2300, 2744
TspGWI	ACGGA	2 cut(s)	174, 3366
TspMI	CCCGGG	1 cut(s)	2055
TspRI	CASTG	7 cut(s)	98, 162, 471, 717, 906, 1379, 2337
Tth111I	GACNNNGTC	1 cut(s)	1861
Van91I	CCANNNNNTGG	2 cut(s)	689, 2501
VpaK11BI	GGWCC	2 cut(s)	96, 865
VspI	ATTAAT	2 cut(s)	792, 2604
XbaI	TCTAGA	3 cut(s)	1387, 1700, 1745
XceI	RCATGY	3 cut(s)	759, 1598, 2687
XmaI	CCCGGG	1 cut(s)	2055
XmaJI	CCTAGG	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	2245
XspI	CTAG	6 cut(s)	630, 1235, 1388, 1701, 1746, 2450
ZrmI	AGTACT	3 cut(s)	443, 1383, 3264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.