Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012459

Physical Location & Seq

Genomic Coordinates Forward (+)

8198196 .. 8200386

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G143000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1704 bp

ATGGCAGTTCTTGTAAATTCAGTGTATCCTATTGCACACCCATCACCAGAAAGTACTAGAAACAGTTGTAGGTTCTTTTCCCACATCAGGAATCTCCAACCACTTTCGCTCAGCAAGGGATTTTCTAGAGTTTTGGCAACTACCCAGATCACCATTTCTCCAAAGGACACTGTTTTCACCTTACCCAACTGGAGGGCTGCCAAGAATAACAGAAGAAGTAGGGAAGTCAGACTAATTGATGCCTTTCTGCACTTAGAGTCTATGGTAGGGAAGGGCCAAAAGCCTGATGTGGCTCAAGCAACTCAGCTCTTATATGACCTTTGCAAGGCAAATAAGATGAGAAAAGCTGTCAGGGTGATTGAAATGATGGTTTCTGCAGGCATTATACCTGATGCAGCTTCTTATACATTCTTGGTGAATTATTTGTGTAAAAGAGGTAATATTGGGTATGCAATGCAGTTGGTTGAAAAAATGGAGGAGTATGGCTATCCAACCAATACCATTACCTATAATTCGCTTGTTAGAGGGCTTTGTGTGCGTGGAAACTTGAACCAAAGCTTGCAGCTTTTGGATAGACTGATACAGAAGGGGCTGGTCCCAAATGTTTATACCTACTCCTTCTTGCTTGAAGCTGCTTATAAGGAAAGAGGGGTCAATGAAGCCATGAAGCTCCTGCAAGAGATAATTGCTAAAGGTGGAAAGCCTAATTTGGTCAGTTACAATGTTTTGTTAACTGGGTTGTGCAAGGAAGGTAGGACTGACGAGGCTTTGCGGTTCTTCAGGAATTTGCCTTCGATGGGGTTTGATCCGAATGTTGTGAGTTATAACATTGTACTGAGGAGCTTGTGTTATGACGGTAGGTGGGAAGAGGCAAATGAGCTTCTGTCTGAGATGGAAGGTGAGGATCGGTCTCCTTCCATAGTTACATATAATATCTTAATTGGTTCACTTGCACTTCATGGTAGAACTGAACATGCTCTTGAAGTTTTGGATGAAATGGTGAGAGGTCGGTTCAAGCCTACTGCTGCCAGCTACAATCCCATAATTGCTCATCTCTGCAAAGAGAGGAAGGTGGATAGTGTGATTAAGTGTCTAGACCAAATGATTCATCGGCGATGTAATCCTAATGAGGGAACATTCAATGCTATTGCCGTGCTCTGTGAGGAAGGGATGGTGCAAGAGGCATTCTCTATAATTCAGAGCCTTGCTAACAAACAAAAGTGCTCCACCAACGAGTTCTACAAAAATGTAATTACAAGCTTGTCTAGGAAAGGGAACACCTTCCCAGCGTTTCAGATTTTATATGAAATGACCAAGCGTGGTTTCACTCCAGATTCTTATACGTATTCATCCTTGATCAGAGGGTTGTGTTTGGAGGGTATGCTAGATGAGGCCATGGAGATTTTCAAGGTAATGGAAGAAAACAACATTAGGCCTGATACCGACAATTTCAATGCCCTTGTACTTGGCTTCTGCAAATCTCGAAGAACAGATTTGTCCTTGCAGGTTTTCGAGATGATGATCGAGAAAGGGCGTATGCCTAATGAAATGACCTATACCATTCTCGTGGAAGGGATTGCACATGAAGGAGAACTGGAGCTGGCAGCCAAAGTTTTGAAAGAGTTGCACCTGAGACATGTTATGAGTCCGAATACAGTGGAAAGACTTGTTATGCAGTATGACTTTGAGGATTTACCAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

568

Amino Acids

64.31

Weight (kDa)

8.11

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79080
fragaria_vesca	FvH4_3g15990
malus_domestica	MD05G1216400.v1.1 MD10G1198700.v1.1
prunus_persica	Prupe.4G143000_v2.0.a1
pyrus_communis	pycom05g19870 pycom10g17140
rosa_chinensis	RchiOBHm_Chr5g0026921
rosa_laevigata	RLG00000032970
rosa_multiflora	Rmu_co8463079.1_g000001 Rmu_sc0004223.1_g000006 Rmu_sc0008732.1_g000003
rosa_roxburghii	Rroxscaffold_1G00052550
rosa_rugosa	Rorug05G0095900
rosa_samantha	Rh5AG189500 Rh5BG187100 Rh5CG206800 Rh5DG188800
rosa_wichuraiana	Rw5G017240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	639, 825
Acc36I	ACCTGC	1 cut(s)	1495
AciI	CCGC	1 cut(s)	772
AclWI	GGATC	2 cut(s)	800, 912
AcsI	RAATTY	2 cut(s)	16, 784
AcuI	CTGAAG	1 cut(s)	763
AfaI	GTAC	3 cut(s)	55, 834, 1464
AfiI	CCNNNNNNNGG	5 cut(s)	87, 192, 325, 797, 1130
AflIII	ACRYGT	1 cut(s)	1636
AjuI	GAANNNNNNNTTGG	2 cut(s)	1307, 1339
Alw21I	GWGCWC	2 cut(s)	1158, 1226
Alw26I	GTCTC	2 cut(s)	915, 1627
AlwI	GGATC	2 cut(s)	800, 912
AoxI	GGCC	3 cut(s)	274, 1392, 1433
ApeKI	GCWGC	6 cut(s)	197, 395, 562, 632, 1025, 1604
ApoI	RAATTY	2 cut(s)	16, 784
Asp700I	GAANNNNTTC	1 cut(s)	1280
AspS9I	GGNCC	2 cut(s)	274, 595
AsuHPI	GGTGA	7 cut(s)	36, 142, 169, 367, 427, 911, 1012
AvaII	GGWCC	1 cut(s)	595
BauI	CACGAG	1 cut(s)	1565
Bbv12I	GWGCWC	2 cut(s)	1158, 1226
BbvI	GCAGC	6 cut(s)	184, 407, 574, 619, 1012, 1616
BccI	CCATC	5 cut(s)	49, 361, 790, 886, 1165
BceAI	ACGGC	1 cut(s)	1136
BciVI	GTATCC	1 cut(s)	36
BclI	TGATCA	1 cut(s)	1356
BcoDI	GTCTC	2 cut(s)	915, 1627
BfaI	CTAG	5 cut(s)	57, 126, 1094, 1266, 1385
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	1495
BfuI	GTATCC	1 cut(s)	36
BisI	GCNGC	6 cut(s)	198, 396, 563, 633, 1026, 1605
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	6 cut(s)	199, 397, 564, 634, 1027, 1606
BmcAI	AGTACT	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	595
BmgT120I	GGNCC	2 cut(s)	274, 595
BmiI	GGNNCC	1 cut(s)	597
BmrI	ACTGGG	1 cut(s)	744
BmsI	GCATC	2 cut(s)	229, 382
BmuI	ACTGGG	1 cut(s)	744
BplI	GAGNNNNNCTC	2 cut(s)	1172, 1204
BpmI	CTGGAG	3 cut(s)	211, 1314, 1616
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	1344
BsaBI	GATNNNNATC	1 cut(s)	1520
BsaI	GGTCTC	1 cut(s)	915
BsaJI	CCNNGG	1 cut(s)	1395
BsaXI	ACNNNNNCTCC	4 cut(s)	142, 172, 832, 862
Bsc4I	CCNNNNNNNGG	5 cut(s)	87, 192, 325, 797, 1130
Bse1I	ACTGG	4 cut(s)	194, 739, 1599, 1697
Bse3DI	GCAATG	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	1520
BseDI	CCNNGG	1 cut(s)	1395
BseGI	GGATG	3 cut(s)	997, 1176, 1349
BseJI	GATNNNNATC	1 cut(s)	1520
BseLI	CCNNNNNNNGG	5 cut(s)	87, 192, 325, 797, 1130
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	5 cut(s)	124, 317, 827, 879, 1622
BseNI	ACTGG	4 cut(s)	194, 739, 1599, 1697
BseRI	GAGGAG	2 cut(s)	491, 853
BseXI	GCAGC	6 cut(s)	184, 407, 574, 619, 1012, 1616
BseYI	CCCAGC	1 cut(s)	1285
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	276, 1394, 1435
BsiHKAI	GWGCWC	2 cut(s)	1158, 1226
BslFI	GGGAC	1 cut(s)	581
BslI	CCNNNNNNNGG	5 cut(s)	87, 192, 325, 797, 1130
BsmAI	GTCTC	2 cut(s)	915, 1627
BsmFI	GGGAC	1 cut(s)	581
BsmI	GAATGC	1 cut(s)	1184
BsnI	GGCC	3 cut(s)	276, 1394, 1435
Bso31I	GGTCTC	1 cut(s)	915
Bsp1286I	GDGCHC	2 cut(s)	1158, 1226
Bsp143I	GATC	5 cut(s)	147, 805, 904, 1356, 1521
Bsp1720I	GCTNAGC	1 cut(s)	110
Bsp19I	CCATGG	1 cut(s)	1395
BspACI	CCGC	1 cut(s)	772
BspANI	GGCC	3 cut(s)	276, 1394, 1435
BspCNI	CTCAG	5 cut(s)	123, 316, 828, 880, 1623
BspLI	GGNNCC	1 cut(s)	597
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	1495
BspPI	GGATC	2 cut(s)	800, 912
BspTNI	GGTCTC	1 cut(s)	915
BsrDI	GCAATG	1 cut(s)	459
BsrI	ACTGG	4 cut(s)	194, 739, 1599, 1697
BssECI	CCNNGG	1 cut(s)	1395
BssMI	GATC	5 cut(s)	147, 805, 904, 1356, 1521
BssSI	CACGAG	1 cut(s)	1565
BssT1I	CCWWGG	1 cut(s)	1395
Bst2BI	CACGAG	1 cut(s)	1565
Bst4CI	ACNGT	4 cut(s)	65, 172, 857, 1657
Bst6I	CTCTTC	1 cut(s)	861
BstBAI	YACGTR	1 cut(s)	1344
BstC8I	GCNNGC	4 cut(s)	379, 560, 1030, 1602
BstDEI	CTNAG	6 cut(s)	110, 253, 303, 836, 888, 1631
BstDSI	CCRYGG	1 cut(s)	1395
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	3 cut(s)	997, 1176, 1349
BstKTI	GATC	5 cut(s)	150, 808, 907, 1359, 1524
BstMAI	GTCTC	2 cut(s)	915, 1627
BstMBI	GATC	5 cut(s)	147, 805, 904, 1356, 1521
BstMWI	GCNNNNNNNGC	1 cut(s)	535
BstNSI	RCATGY	2 cut(s)	977, 1640
BstSFI	CTRYAG	1 cut(s)	375
BstSNI	TACGTA	1 cut(s)	1344
BstV1I	GCAGC	6 cut(s)	184, 407, 574, 619, 1012, 1616
BstXI	CCANNNNNNTGG	1 cut(s)	1567
BsuI	GTATCC	1 cut(s)	36
BsuRI	GGCC	3 cut(s)	276, 1394, 1435
BtgI	CCRYGG	1 cut(s)	1395
BtgZI	GCGATG	1 cut(s)	1129
BtsCI	GGATG	3 cut(s)	997, 1176, 1349
BtsIMutI	CAGTG	3 cut(s)	27, 168, 1662
BveI	ACCTGC	1 cut(s)	1495
Cac8I	GCNNGC	4 cut(s)	379, 560, 1030, 1602
Cfr13I	GGNCC	2 cut(s)	274, 595
Csp6I	GTAC	3 cut(s)	54, 833, 1463
CviAII	CATG	6 cut(s)	664, 959, 974, 1396, 1583, 1637
CviQI	GTAC	3 cut(s)	54, 833, 1463
DdeI	CTNAG	6 cut(s)	110, 253, 303, 836, 888, 1631
DpnI	GATC	5 cut(s)	149, 807, 906, 1358, 1523
DpnII	GATC	5 cut(s)	147, 805, 904, 1356, 1521
Eam1104I	CTCTTC	1 cut(s)	861
EarI	CTCTTC	1 cut(s)	861
Eco105I	TACGTA	1 cut(s)	1344
Eco130I	CCWWGG	1 cut(s)	1395
Eco147I	AGGCCT	1 cut(s)	1435
Eco31I	GGTCTC	1 cut(s)	915
Eco47I	GGWCC	1 cut(s)	595
Eco57I	CTGAAG	1 cut(s)	763
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	1395
ErhI	CCWWGG	1 cut(s)	1395
FaeI	CATG	6 cut(s)	667, 962, 977, 1399, 1586, 1640
FaqI	GGGAC	1 cut(s)	581
FatI	CATG	6 cut(s)	663, 958, 973, 1395, 1582, 1636
FbaI	TGATCA	1 cut(s)	1356
Fnu4HI	GCNGC	6 cut(s)	198, 396, 563, 633, 1026, 1605
FokI	GGATG	3 cut(s)	1004, 1183, 1336
Fsp4HI	GCNGC	6 cut(s)	198, 396, 563, 633, 1026, 1605
FspBI	CTAG	5 cut(s)	57, 126, 1094, 1266, 1385
GluI	GCNGC	6 cut(s)	198, 396, 563, 633, 1026, 1605
GsaI	CCCAGC	1 cut(s)	1289
GsuI	CTGGAG	3 cut(s)	211, 1314, 1616
HaeIII	GGCC	3 cut(s)	276, 1394, 1435
Hin1II	CATG	6 cut(s)	667, 962, 977, 1399, 1586, 1640
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HindIII	AAGCTT	2 cut(s)	556, 1258
HinfI	GANTC	5 cut(s)	91, 257, 1105, 1334, 1645
HpaI	GTTAAC	1 cut(s)	732
HphI	GGTGA	7 cut(s)	36, 142, 169, 367, 427, 911, 1012
Hpy166II	GTNNAC	2 cut(s)	732, 947
Hpy188I	TCNGA	7 cut(s)	230, 810, 889, 1200, 1296, 1361, 1650
Hpy188III	TCNNGA	9 cut(s)	88, 126, 781, 980, 1094, 1331, 1482, 1513, 1525
Hpy8I	GTNNAC	2 cut(s)	732, 947
HpyCH4III	ACNGT	4 cut(s)	65, 172, 857, 1657
HpyCH4IV	ACGT	1 cut(s)	1343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	535
HpyF3I	CTNAG	6 cut(s)	110, 253, 303, 836, 888, 1631
HpySE526I	ACGT	1 cut(s)	1343
Hsp92II	CATG	6 cut(s)	667, 962, 977, 1399, 1586, 1640
Ksp22I	TGATCA	1 cut(s)	1356
KspAI	GTTAAC	1 cut(s)	732
Kzo9I	GATC	5 cut(s)	147, 805, 904, 1356, 1521
LmnI	GCTCC	4 cut(s)	675, 840, 1229, 1597
Lsp1109I	GCAGC	6 cut(s)	184, 407, 574, 619, 1012, 1616
LweI	GCATC	2 cut(s)	229, 382
MaeI	CTAG	5 cut(s)	57, 126, 1094, 1266, 1385
MaeII	ACGT	1 cut(s)	1343
MaeIII	GTNAC	2 cut(s)	716, 922
MalI	GATC	5 cut(s)	149, 807, 906, 1358, 1523
MboI	GATC	5 cut(s)	147, 805, 904, 1356, 1521
MboII	GAAGA	5 cut(s)	225, 769, 878, 1430, 1497
MhlI	GDGCHC	2 cut(s)	1158, 1226
MlyI	GAGTC	2 cut(s)	266, 1654
MmeI	TCCRAC	2 cut(s)	121, 515
MroXI	GAANNNNTTC	1 cut(s)	1280
MseI	TTAA	3 cut(s)	731, 938, 1086
MslI	CAYNNNNRTG	1 cut(s)	1565
Mva1269I	GAATGC	1 cut(s)	1184
MwoI	GCNNNNNNNGC	1 cut(s)	535
NcoI	CCATGG	1 cut(s)	1395
NdeII	GATC	5 cut(s)	147, 805, 904, 1356, 1521
NlaIII	CATG	6 cut(s)	667, 962, 977, 1399, 1586, 1640
NlaIV	GGNNCC	1 cut(s)	597
NspI	RCATGY	2 cut(s)	977, 1640
PceI	AGGCCT	1 cut(s)	1435
PciI	ACATGT	1 cut(s)	1636
PctI	GAATGC	1 cut(s)	1184
PdmI	GAANNNNTTC	1 cut(s)	1280
PfeI	GAWTC	3 cut(s)	91, 1105, 1334
PkrI	GCNGC	6 cut(s)	199, 397, 564, 634, 1027, 1606
PleI	GAGTC	2 cut(s)	265, 1653
PpsI	GAGTC	2 cut(s)	265, 1653
Ppu21I	YACGTR	1 cut(s)	1344
PscI	ACATGT	1 cut(s)	1636
PsiI	TTATAA	2 cut(s)	639, 825
PspFI	CCCAGC	1 cut(s)	1285
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	2 cut(s)	274, 595
PstI	CTGCAG	1 cut(s)	379
RsaI	GTAC	3 cut(s)	55, 834, 1464
RsaNI	GTAC	3 cut(s)	54, 833, 1463
RseI	CAYNNNNRTG	1 cut(s)	1565
SaqAI	TTAA	3 cut(s)	731, 938, 1086
SatI	GCNGC	6 cut(s)	198, 396, 563, 633, 1026, 1605
Sau3AI	GATC	5 cut(s)	147, 805, 904, 1356, 1521
Sau96I	GGNCC	2 cut(s)	274, 595
ScaI	AGTACT	1 cut(s)	55
SchI	GAGTC	2 cut(s)	266, 1654
SduI	GDGCHC	2 cut(s)	1158, 1226
SfaNI	GCATC	2 cut(s)	229, 382
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	1565
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
SnaBI	TACGTA	1 cut(s)	1344
SseBI	AGGCCT	1 cut(s)	1435
SsiI	CCGC	1 cut(s)	772
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	5 cut(s)	57, 126, 1094, 1266, 1385
StuI	AGGCCT	1 cut(s)	1435
StyI	CCWWGG	1 cut(s)	1395
TaaI	ACNGT	4 cut(s)	65, 172, 857, 1657
TaiI	ACGT	1 cut(s)	1346
TaqI	TCGA	4 cut(s)	794, 1483, 1512, 1524
TaqII	GACCGA	1 cut(s)	897
TatI	WGTACW	3 cut(s)	53, 832, 1462
TfiI	GAWTC	3 cut(s)	91, 1105, 1334
Tru1I	TTAA	3 cut(s)	731, 938, 1086
Tru9I	TTAA	3 cut(s)	731, 938, 1086
TscAI	CASTG	3 cut(s)	27, 175, 1662
TseI	GCWGC	6 cut(s)	197, 395, 562, 632, 1025, 1604
TspDTI	ATGAA	9 cut(s)	672, 680, 947, 1008, 1097, 1320, 1338, 1560, 1599
TspRI	CASTG	3 cut(s)	27, 175, 1662
VpaK11BI	GGWCC	1 cut(s)	595
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	2 cut(s)	16, 784
XbaI	TCTAGA	2 cut(s)	125, 1093
XceI	RCATGY	2 cut(s)	977, 1640
XmnI	GAANNNNTTC	1 cut(s)	1280
XspI	CTAG	5 cut(s)	57, 126, 1094, 1266, 1385
ZrmI	AGTACT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.