AT1G79160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013488
Physical Location & Seq
Reverse (-)
29779517 .. 29780876
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79160.1

Sequence Viewer

Length: 720 bp
ATGATTCTTGATATGGCTGCTGACGTCAGCTCTCTCGTACGGTTACTAAGCGGTTACAAAGATGATCGAGCGGTGGTTAAAGATTCTGCCGGAGCCAAATCCTCGGCGGCGCTGATGACTCGTGACCTTCTTGGAAACGGCAGAGGAGGAGGAGGCGATCGGTCTTTAGAGCTTGACCTCGACCTTCAAGTCCCCACCGGTTATGAAAAACGCCTCGACTTGAAGTCAGGGAAAGTGTATTTGCAACGATGCAATTCAACGAGCTCGTCGTCAATAACAAACGCAGACCAAACCAATCAAACAGTACCAACGTTTCAGGATTTGAATTTTCCTCCTCCGACTTTGAACAATTCTCCTTTGTTGAACCTCTTCGACGATACAACGCCGGAACTGAAGCTACTTCCGTCGTCTCGTTCTTCTCGTCCGAACACTAGTAATTTACAGAGTGTATGCACACTGGACAAGGTGAAATCAGCTCTAGAGAGGGCAGAGAGAGATCCTGCTATGTTCAAGAAACGTCAATCACCGGATGATACGGTTTACGATCATTATAGGACGGAGGCTGTAGCGTCACCGGTGGTTGCCGGATGTCCTGGTTGTTTATCGTACGTGTTGGTGATGATGAATAACCCGAAATGTCCGAGGTGTGATACCATTGTTCCTTTGCCTACAAATCCTATGAAGAAGAAGCCTAAGATTGATCTCAACATATCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.05

Weight (kDa)

8.48

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn-ribbon_GIR1 PF24747 191 - 220 3.4e-06 GIR1-like zinc ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79160
fragaria_vesca FvH4_3g15360
malus_domestica MD05G1223700.v1.1 MD10G1205200.v1.1
prunus_persica Prupe.4G136500_v2.0.a1
pyrus_communis pycom05g20660 pycom10g17570
rosa_chinensis RchiOBHm_Chr5g0025801
rosa_laevigata RLG00000032876
rosa_multiflora Rmu_sc0005610.1_g000005
rosa_roxburghii Rroxscaffold_1G00053400 Rroxscaffold_1G00054340
rosa_rugosa Rorug05G0088600
rosa_samantha Rh5AG180700 Rh5BG179300 Rh5CG197100 Rh5DG179000
rosa_wichuraiana Rw5G016390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AatII GACGTC 1 cut(s) 27
AccBSI CCGCTC 1 cut(s) 71
AciI CCGC 3 cut(s) 51, 71, 107
AclI AACGTT 1 cut(s) 311
AclWI GGATC 1 cut(s) 491
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 413
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 3 cut(s) 39, 306, 608
AflIII ACRYGT 1 cut(s) 609
AgeI ACCGGT 2 cut(s) 197, 574
AgsI TTSAA 7 cut(s) 188, 223, 258, 325, 346, 364, 511
AhdI GACNNNNNGTC 1 cut(s) 223
AhlI ACTAGT 1 cut(s) 431
AjnI CCWGG 1 cut(s) 592
AluBI AGCT 5 cut(s) 30, 172, 264, 397, 476
AluI AGCT 5 cut(s) 30, 172, 264, 397, 476
Alw21I GWGCWC 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 1 cut(s) 491
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 325
AsiGI ACCGGT 2 cut(s) 197, 574
Asp700I GAANNNNTTC 1 cut(s) 368
AspLEI GCGC 1 cut(s) 112
AsuHPI GGTGA 4 cut(s) 478, 516, 564, 628
BaeI ACNNNNGTAYC 2 cut(s) 642, 675
BanII GRGCYC 1 cut(s) 266
BauI CACGAG 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 594
BcoDI GTCTC 1 cut(s) 414
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 2 cut(s) 432, 479
BfmI CTRYAG 1 cut(s) 564
BfoI RGCGCY 1 cut(s) 113
BisI GCNGC 2 cut(s) 18, 108
BlsI GCNGC 2 cut(s) 19, 109
Bme1390I CCNGG 1 cut(s) 594
BmeRI GACNNNNNGTC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 594
BmsI GCATC 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 610
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 102, 641
BsaWI WCCGGW 3 cut(s) 197, 526, 574
Bse118I RCCGGY 2 cut(s) 197, 574
Bse1I ACTGG 1 cut(s) 462
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 2 cut(s) 102, 641
BseGI GGATG 2 cut(s) 535, 593
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 4 cut(s) 159, 162, 165, 324
BseXI GCAGC 1 cut(s) 4
Bsh1285I CGRYCG 1 cut(s) 160
BshTI ACCGGT 2 cut(s) 197, 574
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 266
BsiSI CCGG 6 cut(s) 90, 198, 386, 527, 575, 585
BsiWI CGTACG 2 cut(s) 37, 606
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 414
BsmBI CGTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 5 cut(s) 64, 157, 496, 544, 700
BspACI CCGC 3 cut(s) 51, 71, 107
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 71
BsrFI RCCGGY 2 cut(s) 197, 574
BsrI ACTGG 1 cut(s) 462
BssAI RCCGGY 2 cut(s) 197, 574
BssECI CCNNGG 2 cut(s) 102, 641
BssMI GATC 5 cut(s) 64, 157, 496, 544, 700
BssNI GRCGYC 1 cut(s) 24
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 3 cut(s) 42, 304, 538
Bst6I CTCTTC 1 cut(s) 374
BstACI GRCGYC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 610
BstDEI CTNAG 2 cut(s) 47, 693
BstF5I GGATG 2 cut(s) 535, 593
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 5 cut(s) 67, 160, 499, 547, 703
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 5 cut(s) 64, 157, 496, 544, 700
BstMCI CGRYCG 1 cut(s) 160
BstNI CCWGG 1 cut(s) 594
BstSCI CCNGG 1 cut(s) 592
BstSFI CTRYAG 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BtsCI GGATG 2 cut(s) 535, 593
BtsIMutI CAGTG 1 cut(s) 455
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 2 cut(s) 197, 574
CseI GACGC 1 cut(s) 558
Csp6I GTAC 3 cut(s) 38, 305, 607
CspAI ACCGGT 2 cut(s) 197, 574
CviJI RGCY 9 cut(s) 17, 30, 95, 172, 264, 397, 476, 563, 691
CviKI_1 RGCY 9 cut(s) 17, 30, 95, 172, 264, 397, 476, 563, 691
CviQI GTAC 3 cut(s) 38, 305, 607
DdeI CTNAG 2 cut(s) 47, 693
DpnI GATC 5 cut(s) 66, 159, 498, 546, 702
DpnII GATC 5 cut(s) 64, 157, 496, 544, 700
DrdI GACNNNNNNGTC 1 cut(s) 188
DriI GACNNNNNGTC 1 cut(s) 223
DseDI GACNNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 374
Eam1105I GACNNNNNGTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 264
Eco57I CTGAAG 1 cut(s) 413
EcoICRI GAGCTC 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 592
EcoT38I GRGCYC 1 cut(s) 266
Esp3I CGTCTC 1 cut(s) 414
FaiI YATR 7 cut(s) 14, 204, 451, 506, 552, 680, 710
FaqI GGGAC 1 cut(s) 176
Fnu4HI GCNGC 2 cut(s) 18, 108
FokI GGATG 2 cut(s) 542, 600
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 2 cut(s) 18, 108
FspBI CTAG 2 cut(s) 432, 479
GlaI GCGC 1 cut(s) 111
GluI GCNGC 2 cut(s) 18, 108
HaeII RGCGCY 1 cut(s) 113
HapII CCGG 6 cut(s) 90, 198, 386, 527, 575, 585
HgaI GACGC 1 cut(s) 558
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 24
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 3 cut(s) 4, 83, 118
HpaII CCGG 6 cut(s) 90, 198, 386, 527, 575, 585
HphI GGTGA 4 cut(s) 478, 516, 564, 628
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 4 cut(s) 339, 426, 642, 719
Hpy188III TCNNGA 5 cut(s) 8, 122, 317, 479, 511
Hpy8I GTNNAC 1 cut(s) 541
Hpy99I CGWCG 3 cut(s) 271, 377, 409
HpyAV CCTTC 2 cut(s) 137, 194
HpyCH4III ACNGT 3 cut(s) 42, 304, 538
HpyCH4IV ACGT 4 cut(s) 24, 311, 517, 609
HpyCH4V TGCA 3 cut(s) 244, 252, 453
HpyF3I CTNAG 2 cut(s) 47, 693
HpySE526I ACGT 4 cut(s) 24, 311, 517, 609
Hsp92I GRCGYC 1 cut(s) 24
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 5 cut(s) 64, 157, 496, 544, 700
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 1 cut(s) 239
MaeI CTAG 2 cut(s) 432, 479
MaeII ACGT 4 cut(s) 24, 311, 517, 609
MaeIII GTNAC 4 cut(s) 42, 53, 122, 570
MalI GATC 5 cut(s) 66, 159, 498, 546, 702
MbiI CCGCTC 1 cut(s) 71
MboI GATC 5 cut(s) 64, 157, 496, 544, 700
MboII GAAGA 4 cut(s) 361, 408, 694, 697
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 1 cut(s) 266
MluCI AATT 4 cut(s) 253, 325, 349, 436
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 362
MroXI GAANNNNTTC 1 cut(s) 368
MseI TTAA 1 cut(s) 78
MspI CCGG 6 cut(s) 90, 198, 386, 527, 575, 585
MspR9I CCNGG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 594
NdeII GATC 5 cut(s) 64, 157, 496, 544, 700
NlaIV GGNNCC 1 cut(s) 94
NmeAIII GCCGAG 1 cut(s) 83
NmuCI GTSAC 2 cut(s) 122, 570
PcsI WCGNNNNNNNCGW 2 cut(s) 266, 418
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 2 cut(s) 4, 83
Pfl23II CGTACG 2 cut(s) 37, 606
PinAI ACCGGT 2 cut(s) 197, 574
PkrI GCNGC 2 cut(s) 19, 109
Ple19I CGATCG 1 cut(s) 160
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 610
Psp124BI GAGCTC 1 cut(s) 266
Psp1406I AACGTT 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspLI CGTACG 2 cut(s) 37, 606
PspN4I GGNNCC 1 cut(s) 94
PsrI GAACNNNNNNTAC 2 cut(s) 381, 413
PsuI RGATCY 1 cut(s) 496
PvuI CGATCG 1 cut(s) 160
RsaI GTAC 3 cut(s) 39, 306, 608
RsaNI GTAC 3 cut(s) 38, 305, 607
SacI GAGCTC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 2 cut(s) 18, 108
Sau3AI GATC 5 cut(s) 64, 157, 496, 544, 700
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 594
SduI GDGCHC 1 cut(s) 266
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 1 cut(s) 564
SgrAI CRCCGGYG 1 cut(s) 574
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 4 cut(s) 253, 325, 349, 436
SsiI CCGC 3 cut(s) 51, 71, 107
SspMI CTAG 2 cut(s) 432, 479
SstI GAGCTC 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 592
TaaI ACNGT 3 cut(s) 42, 304, 538
TaiI ACGT 4 cut(s) 27, 314, 520, 612
TaqI TCGA 4 cut(s) 67, 180, 216, 372
TaqII GACCGA 1 cut(s) 150
TasI AATT 4 cut(s) 253, 325, 349, 436
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 2 cut(s) 4, 83
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 462
TseFI GTSAC 2 cut(s) 122, 570
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 2 cut(s) 122, 570
TspDTI ATGAA 3 cut(s) 219, 638, 695
TspGWI ACGGA 2 cut(s) 393, 572
TspRI CASTG 1 cut(s) 462
XapI RAATTY 1 cut(s) 325
XbaI TCTAGA 1 cut(s) 478
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 2 cut(s) 432, 479
ZraI GACGTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.