Prupe.4G136500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013488
Physical Location & Seq
Forward (+)
7565595 .. 7567555
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G136500.1

Sequence Viewer

Length: 750 bp
ATGGCTGCTGACGTGAGCTCTCTGTTTCGGGTTCTAAATGGGTACAGCGACGATCAACATCTGAGTTTGGGGAGTGATTCTAGTGGGGAGAAATCAACGGCCTTGATTACACGAGACTTGCTCGGTGGTGGGTCTTCTTCCAAGCTTGCTAACGAGTCCCAGGAACTGGACCTCGACTTGCAGGTCCCTAATGGCTGGGAAAAGCGCTTGGACTTGAAGTCTGGGAAAGTGTATCTTCAAAGGTGCAGTGCTCCAAATTCACTTTCAATCTCAGATCAGAGGGACCAAACCAATCCAACAGTTCCAAAGATGCAAGATTTAAATTTCCCTCCATCATCATCCTCAAAAATCCCACTAAGTCTCTTTGATGACACAAGCACCAGCCTGGAATTAAAATTAGTTCCCTCATCACCACCCTCATGCAATTACCAGAGCCTATGCACTTTGGATAAAGTAAAATCAGCCCTCGAAAGGGCAGAGAAAGAACCGATTAAGAGGCGATCTTCGTCGATGTGGAAGTCATCGTTGTCATCATCACCATCGTACTCATCGTCGTCATCATCCATCAAAGAAACTCAGGAGGAAGAGAGTGAGGAAAAACTATTTGCATCACCATTTGCAGCAGGGTGTCCTGGTTGCTTATCTTATGTACTGATAATGAGAAATAACCCGAAATGTCCTAGGTGCAATTCTGTTGTCCCATTGCCAATGATGAAGAAACCTCGGCTTGATCTCAACAGATCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

27.19

Weight (kDa)

7.5

Isoelectric Point (pI)

61.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79160
fragaria_vesca FvH4_3g15360
malus_domestica MD05G1223700.v1.1 MD10G1205200.v1.1
prunus_persica Prupe.4G136500_v2.0.a1
pyrus_communis pycom05g20660 pycom10g17570
rosa_chinensis RchiOBHm_Chr5g0025801
rosa_laevigata RLG00000032876
rosa_multiflora Rmu_sc0005610.1_g000005
rosa_roxburghii Rroxscaffold_1G00053400 Rroxscaffold_1G00054340
rosa_rugosa Rorug05G0088600
rosa_samantha Rh5AG180700 Rh5BG179300 Rh5CG197100 Rh5DG179000
rosa_wichuraiana Rw5G016390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 166
AcsI RAATTY 2 cut(s) 256, 322
AfaI GTAC 3 cut(s) 44, 545, 651
AfeI AGCGCT 1 cut(s) 206
AfiI CCNNNNNNNGG 3 cut(s) 166, 471, 472
AgsI TTSAA 3 cut(s) 217, 239, 267
AhdI GACNNNNNGTC 1 cut(s) 217
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 3 cut(s) 159, 384, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 247, 279
AluBI AGCT 2 cut(s) 18, 145
AluI AGCT 2 cut(s) 18, 145
Alw21I GWGCWC 2 cut(s) 20, 253
Alw26I GTCTC 2 cut(s) 108, 365
AlwNI CAGNNNCTG 1 cut(s) 166
Aor51HI AGCGCT 1 cut(s) 206
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 2 cut(s) 5, 620
ApoI RAATTY 2 cut(s) 256, 322
AspA2I CCTAGG 1 cut(s) 680
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 3 cut(s) 169, 184, 283
AsuHPI GGTGA 3 cut(s) 402, 528, 603
AvaII GGWCC 3 cut(s) 169, 184, 283
AvrII CCTAGG 1 cut(s) 680
BanII GRGCYC 1 cut(s) 20
BauI CACGAG 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 20, 253
BbvI GCAGC 1 cut(s) 632
BccI CCATC 3 cut(s) 340, 547, 572
BceAI ACGGC 1 cut(s) 114
BciT130I CCWGG 3 cut(s) 161, 386, 633
BcoDI GTCTC 2 cut(s) 108, 365
BfaI CTAG 2 cut(s) 81, 681
BfoI RGCGCY 1 cut(s) 208
BfuAI ACCTGC 1 cut(s) 172
BisI GCNGC 2 cut(s) 6, 621
BlnI CCTAGG 1 cut(s) 680
BlsI GCNGC 2 cut(s) 7, 622
Bme1390I CCNGG 3 cut(s) 161, 386, 633
Bme18I GGWCC 3 cut(s) 169, 184, 283
BmeRI GACNNNNNGTC 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 3 cut(s) 169, 184, 283
BmiI GGNNCC 2 cut(s) 186, 284
BmrFI CCNGG 3 cut(s) 161, 386, 633
BmsI GCATC 2 cut(s) 300, 617
BpiI GAAGAC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 159, 680, 722
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 471, 472
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 701
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 3 cut(s) 161, 386, 633
BseDI CCNNGG 3 cut(s) 159, 680, 722
BseGI GGATG 2 cut(s) 338, 560
BseJI GATNNNNATC 1 cut(s) 57
BseLI CCNNNNNNNGG 3 cut(s) 166, 471, 472
BseMI GCAATG 1 cut(s) 701
BseMII CTCAG 3 cut(s) 53, 285, 590
BseNI ACTGG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 632
BseYI CCCAGC 1 cut(s) 195
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 1 cut(s) 101
BsiHKAI GWGCWC 2 cut(s) 20, 253
BslFI GGGAC 4 cut(s) 142, 170, 296, 683
BslI CCNNNNNNNGG 3 cut(s) 166, 471, 472
BsmAI GTCTC 2 cut(s) 108, 365
BsmFI GGGAC 4 cut(s) 142, 170, 296, 683
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 20, 253
Bsp143I GATC 5 cut(s) 52, 274, 500, 730, 740
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 3 cut(s) 54, 284, 589
BspLI GGNNCC 2 cut(s) 186, 284
BspMI ACCTGC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 701
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 3 cut(s) 159, 680, 722
BssMI GATC 5 cut(s) 52, 274, 500, 730, 740
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 680
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 3 cut(s) 161, 386, 633
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 579
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 4 cut(s) 62, 271, 356, 576
BstF5I GGATG 2 cut(s) 338, 560
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 5 cut(s) 55, 277, 503, 733, 743
BstMAI GTCTC 2 cut(s) 108, 365
BstMBI GATC 5 cut(s) 52, 274, 500, 730, 740
BstNI CCWGG 3 cut(s) 161, 386, 633
BstSCI CCNGG 3 cut(s) 159, 384, 631
BstV1I GCAGC 1 cut(s) 632
BstV2I GAAGAC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 101
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 2 cut(s) 338, 560
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 253
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 166
CfoI GCGC 1 cut(s) 207
Cfr13I GGNCC 3 cut(s) 169, 184, 283
Csp6I GTAC 3 cut(s) 43, 544, 650
CviAII CATG 1 cut(s) 420
CviJI RGCY 9 cut(s) 5, 18, 101, 145, 195, 384, 435, 464, 727
CviKI_1 RGCY 9 cut(s) 5, 18, 101, 145, 195, 384, 435, 464, 727
CviQI GTAC 3 cut(s) 43, 544, 650
DdeI CTNAG 4 cut(s) 62, 271, 356, 576
DpnI GATC 5 cut(s) 54, 276, 502, 732, 742
DpnII GATC 5 cut(s) 52, 274, 500, 730, 740
DraI TTTAAA 1 cut(s) 321
DrdI GACNNNNNNGTC 1 cut(s) 182
DriI GACNNNNNGTC 1 cut(s) 217
DseDI GACNNNNNNGTC 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 579
Eam1105I GACNNNNNGTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 579
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 680
Eco24I GRGCYC 1 cut(s) 20
Eco47I GGWCC 3 cut(s) 169, 184, 283
Eco47III AGCGCT 1 cut(s) 206
Eco53kI GAGCTC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 18
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 3 cut(s) 159, 384, 631
EcoT14I CCWWGG 1 cut(s) 680
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 680
FaeI CATG 1 cut(s) 423
FaiI YATR 3 cut(s) 421, 439, 648
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FaqI GGGAC 4 cut(s) 142, 170, 296, 683
FatI CATG 1 cut(s) 419
Fnu4HI GCNGC 2 cut(s) 6, 621
FokI GGATG 2 cut(s) 325, 547
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 6, 621
FspBI CTAG 2 cut(s) 81, 681
GlaI GCGC 1 cut(s) 206
GluI GCNGC 2 cut(s) 6, 621
GsaI CCCAGC 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 1 cut(s) 101
HhaI GCGC 1 cut(s) 207
Hin1II CATG 1 cut(s) 423
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 2 cut(s) 77, 155
HphI GGTGA 3 cut(s) 402, 528, 603
Hpy188I TCNGA 3 cut(s) 63, 274, 279
Hpy188III TCNNGA 1 cut(s) 578
Hpy99I CGWCG 3 cut(s) 53, 511, 556
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 8 cut(s) 181, 246, 313, 423, 441, 608, 620, 687
HpyF3I CTNAG 4 cut(s) 62, 271, 356, 576
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 1 cut(s) 423
HspAI GCGC 1 cut(s) 205
Kzo9I GATC 5 cut(s) 52, 274, 500, 730, 740
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 1 cut(s) 632
LweI GCATC 2 cut(s) 300, 617
MaeI CTAG 2 cut(s) 81, 681
MaeII ACGT 1 cut(s) 12
MalI GATC 5 cut(s) 54, 276, 502, 732, 742
MboI GATC 5 cut(s) 52, 274, 500, 730, 740
MboII GAAGA 6 cut(s) 126, 129, 227, 495, 596, 727
MhlI GDGCHC 2 cut(s) 20, 253
MluCI AATT 6 cut(s) 256, 322, 389, 395, 424, 688
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 320
MseI TTAA 3 cut(s) 320, 392, 492
MslI CAYNNNNRTG 1 cut(s) 418
MspR9I CCNGG 3 cut(s) 161, 386, 633
MvaI CCWGG 3 cut(s) 161, 386, 633
NdeII GATC 5 cut(s) 52, 274, 500, 730, 740
NlaIII CATG 1 cut(s) 423
NlaIV GGNNCC 2 cut(s) 186, 284
NmeAIII GCCGAG 1 cut(s) 703
PcsI WCGNNNNNNNCGW 1 cut(s) 548
PfeI GAWTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 166
PkrI GCNGC 2 cut(s) 7, 622
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PpuMI RGGWCCY 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 184
Psp6I CCWGG 3 cut(s) 159, 384, 631
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 3 cut(s) 159, 384, 631
PspN4I GGNNCC 2 cut(s) 186, 284
PspPI GGNCC 3 cut(s) 169, 184, 283
PspPPI RGGWCCY 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 166
RsaI GTAC 3 cut(s) 44, 545, 651
RsaNI GTAC 3 cut(s) 43, 544, 650
RseI CAYNNNNRTG 1 cut(s) 418
SacI GAGCTC 1 cut(s) 20
SaqAI TTAA 3 cut(s) 320, 392, 492
SatI GCNGC 2 cut(s) 6, 621
Sau3AI GATC 5 cut(s) 52, 274, 500, 730, 740
Sau96I GGNCC 3 cut(s) 169, 184, 283
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 3 cut(s) 161, 386, 633
SduI GDGCHC 2 cut(s) 20, 253
SetI ASST 8 cut(s) 15, 20, 147, 174, 186, 245, 686, 724
SfaNI GCATC 2 cut(s) 300, 617
SinI GGWCC 3 cut(s) 169, 184, 283
SmiI ATTTAAAT 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 418
Sse9I AATT 6 cut(s) 256, 322, 389, 395, 424, 688
SspMI CTAG 2 cut(s) 81, 681
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 3 cut(s) 159, 384, 631
StyI CCWWGG 1 cut(s) 680
SwaI ATTTAAAT 1 cut(s) 321
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 1 cut(s) 15
TaqI TCGA 3 cut(s) 174, 468, 509
TasI AATT 6 cut(s) 256, 322, 389, 395, 424, 688
TatI WGTACW 1 cut(s) 649
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 3 cut(s) 320, 392, 492
Tru9I TTAA 3 cut(s) 320, 392, 492
TscAI CASTG 1 cut(s) 253
TseI GCWGC 2 cut(s) 5, 620
TspDTI ATGAA 1 cut(s) 728
TspRI CASTG 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 166
VpaK11BI GGWCC 3 cut(s) 169, 184, 283
XapI RAATTY 2 cut(s) 256, 322
XmaJI CCTAGG 1 cut(s) 680
XspI CTAG 2 cut(s) 81, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.