Rroxscaffold_1G00054340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013488
Physical Location & Seq
Forward (+)
75752291 .. 75754075
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054340.1

Sequence Viewer

Length: 762 bp
ATGGCTGCTGAGGTTAGCTCTCTGTTTCGTGTCCTTAGTGGGTACAACGATGATCAACAACATCTGAGCATGGGTAGTGAATCCAGTGGTGAGAAACCAACGGCTCTGATTACAAGAGACTTGCTTGGTGGTGGGTCTTCTTCTTCTTCCAAGCTTTCAAACGAGTCCCAGGAACTCGACCTCGATTTACAGGTCCCTAATGGCTACGAAAAGCGCCTAGACTTGAAGTCAGGGAAAGTGTATCTTCAAAGGTCCAGTGCTGTTTCAGTACCAGATCATCAAAGCCACACCAATCCCACAGTTCCAAAGATGCAAGACTTGAACTTTCCGCCATCACCATCCTCGAAAACCCCGTTGAATCTCTTTGATGATACGAGTGCTAGCCTTGAATTGAAGCTAGTATCCTCATCCCCGTCGCCACCTCCTCCGCAGCCCTCTTCTTGCAATTTCCAGAGTCTGTGCACTTTGGACAAAGTAAAGTCTGCACTCGAAAGGGCCGAGAGAGAACCTATCAAGAAGCGTGCTACTTCTTTGTTGAAGTCTTCATTGTCATCCTCACCGTCTTACTCATCGTCATCGTCTTCCATCAAGGAAACTCAGGAGGAGGACAGTGAATTTTCATCTCCATTTGCAGCAGGGTGTCCTGGCTGCTTGTCATATGTACTCATAATGAGAAATAACCCGAAATGTCCTAGGTGCAATTCGCTGATTCCATTGCCAATGACAAAGAAAGCTCGGATTGATCTCAACAGAACAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.37

Weight (kDa)

7.57

Isoelectric Point (pI)

64.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn-ribbon_GIR1 PF24747 212 - 237 6.4e-07 GIR1-like zinc ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79160
fragaria_vesca FvH4_3g15360
malus_domestica MD05G1223700.v1.1 MD10G1205200.v1.1
prunus_persica Prupe.4G136500_v2.0.a1
pyrus_communis pycom05g20660 pycom10g17570
rosa_chinensis RchiOBHm_Chr5g0025801
rosa_laevigata RLG00000032876
rosa_multiflora Rmu_sc0005610.1_g000005
rosa_roxburghii Rroxscaffold_1G00053400 Rroxscaffold_1G00054340
rosa_rugosa Rorug05G0088600
rosa_samantha Rh5AG180700 Rh5BG179300 Rh5CG197100 Rh5DG179000
rosa_wichuraiana Rw5G016390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 329, 428
AcsI RAATTY 1 cut(s) 614
AfaI GTAC 3 cut(s) 44, 270, 663
AgsI TTSAA 8 cut(s) 159, 226, 248, 322, 358, 389, 394, 538
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 2 cut(s) 168, 643
AluBI AGCT 4 cut(s) 18, 154, 397, 734
AluI AGCT 4 cut(s) 18, 154, 397, 734
Alw21I GWGCWC 1 cut(s) 464
Alw26I GTCTC 1 cut(s) 111
Alw44I GTGCAC 1 cut(s) 460
AlwNI CAGNNNCTG 1 cut(s) 457
AoxI GGCC 1 cut(s) 495
ApaLI GTGCAC 1 cut(s) 460
ApeKI GCWGC 4 cut(s) 5, 430, 632, 648
ApoI RAATTY 1 cut(s) 614
AspA2I CCTAGG 1 cut(s) 692
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 3 cut(s) 193, 252, 495
AsuHPI GGTGA 3 cut(s) 101, 327, 549
AsuNHI GCTAGC 1 cut(s) 380
AvaII GGWCC 2 cut(s) 193, 252
AvrII CCTAGG 1 cut(s) 692
BaeGI GKGCMC 1 cut(s) 464
BbsI GAAGAC 3 cut(s) 129, 534, 573
Bbv12I GWGCWC 1 cut(s) 464
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 3 cut(s) 442, 635, 644
BccI CCATC 3 cut(s) 340, 346, 593
BceAI ACGGC 1 cut(s) 117
BciT130I CCWGG 2 cut(s) 170, 645
BciVI GTATCC 1 cut(s) 412
BclI TGATCA 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 4 cut(s) 218, 381, 398, 693
BfoI RGCGCY 1 cut(s) 217
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 4 cut(s) 6, 431, 633, 649
BlnI CCTAGG 1 cut(s) 692
BlsI GCNGC 4 cut(s) 7, 432, 634, 650
Bme1390I CCNGG 2 cut(s) 170, 645
Bme18I GGWCC 2 cut(s) 193, 252
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgT120I GGNCC 3 cut(s) 193, 252, 495
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 170, 645
BmsI GCATC 1 cut(s) 300
BmtI GCTAGC 1 cut(s) 384
BpiI GAAGAC 3 cut(s) 129, 534, 573
BplI GAGNNNNNCTC 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 168, 692
Bse1I ACTGG 2 cut(s) 84, 255
Bse3DI GCAATG 1 cut(s) 713
BseBI CCWGG 2 cut(s) 170, 645
BseDI CCNNGG 2 cut(s) 168, 692
BseGI GGATG 3 cut(s) 338, 407, 551
BseMI GCAATG 1 cut(s) 713
BseMII CTCAG 2 cut(s) 56, 611
BseNI ACTGG 2 cut(s) 84, 255
BseRI GAGGAG 2 cut(s) 414, 617
BseSI GKGCMC 1 cut(s) 464
BseXI GCAGC 3 cut(s) 442, 635, 644
BsgI GTGCAG 1 cut(s) 468
BshFI GGCC 1 cut(s) 497
BsiHKAI GWGCWC 1 cut(s) 464
BslFI GGGAC 2 cut(s) 151, 179
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 151, 179
BsnI GGCC 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 464
Bsp143I GATC 3 cut(s) 52, 274, 742
BspACI CCGC 2 cut(s) 329, 428
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 2 cut(s) 57, 610
BspLI GGNNCC 1 cut(s) 195
BspOI GCTAGC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 713
BsrI ACTGG 2 cut(s) 84, 255
BssECI CCNNGG 2 cut(s) 168, 692
BssMI GATC 3 cut(s) 52, 274, 742
BssT1I CCWWGG 1 cut(s) 692
Bst2UI CCWGG 2 cut(s) 170, 645
Bst4CI ACNGT 3 cut(s) 301, 561, 611
Bst6I CTCTTC 1 cut(s) 442
BstC8I GCNNGC 2 cut(s) 382, 522
BstDEI CTNAG 4 cut(s) 9, 35, 65, 597
BstF5I GGATG 3 cut(s) 338, 407, 551
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 3 cut(s) 55, 277, 745
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 3 cut(s) 52, 274, 742
BstNI CCWGG 2 cut(s) 170, 645
BstSCI CCNGG 2 cut(s) 168, 643
BstSLI GKGCMC 1 cut(s) 464
BstV1I GCAGC 3 cut(s) 442, 635, 644
BstV2I GAAGAC 3 cut(s) 129, 534, 573
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 1 cut(s) 497
BtsCI GGATG 3 cut(s) 338, 407, 551
BtsIMutI CAGTG 3 cut(s) 91, 262, 616
Cac8I GCNNGC 2 cut(s) 382, 522
CaiI CAGNNNCTG 1 cut(s) 457
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 3 cut(s) 193, 252, 495
Csp6I GTAC 3 cut(s) 43, 269, 662
CviAII CATG 1 cut(s) 70
CviQI GTAC 3 cut(s) 43, 269, 662
DdeI CTNAG 4 cut(s) 9, 35, 65, 597
DpnI GATC 3 cut(s) 54, 276, 744
DpnII GATC 3 cut(s) 52, 274, 742
DriI GACNNNNNGTC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 442
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 442
EciI GGCGGA 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 692
Eco47I GGWCC 2 cut(s) 193, 252
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 168, 643
EcoT14I CCWWGG 1 cut(s) 692
ErhI CCWWGG 1 cut(s) 692
FaeI CATG 1 cut(s) 73
FaiI YATR 4 cut(s) 71, 658, 660, 668
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FaqI GGGAC 2 cut(s) 151, 179
FatI CATG 1 cut(s) 69
FauNDI CATATG 1 cut(s) 658
FbaI TGATCA 1 cut(s) 52
Fnu4HI GCNGC 4 cut(s) 6, 431, 633, 649
FokI GGATG 3 cut(s) 325, 394, 538
Fsp4HI GCNGC 4 cut(s) 6, 431, 633, 649
FspBI CTAG 4 cut(s) 218, 381, 398, 693
GlaI GCGC 1 cut(s) 215
GluI GCNGC 4 cut(s) 6, 431, 633, 649
HaeII RGCGCY 1 cut(s) 217
HaeIII GGCC 1 cut(s) 497
HhaI GCGC 1 cut(s) 216
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 5 cut(s) 80, 164, 358, 454, 709
HphI GGTGA 3 cut(s) 101, 327, 549
Hpy166II GTNNAC 1 cut(s) 462
Hpy188I TCNGA 3 cut(s) 66, 108, 738
Hpy188III TCNNGA 3 cut(s) 451, 514, 599
Hpy8I GTNNAC 1 cut(s) 462
Hpy99I CGWCG 1 cut(s) 418
HpyCH4III ACNGT 3 cut(s) 301, 561, 611
HpyCH4V TGCA 6 cut(s) 313, 444, 462, 485, 632, 699
HpyF3I CTNAG 4 cut(s) 9, 35, 65, 597
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 3 cut(s) 52, 274, 742
Lsp1109I GCAGC 3 cut(s) 442, 635, 644
LweI GCATC 1 cut(s) 300
MaeI CTAG 4 cut(s) 218, 381, 398, 693
MalI GATC 3 cut(s) 54, 276, 744
MboI GATC 3 cut(s) 52, 274, 742
MboII GAAGA 8 cut(s) 129, 132, 135, 138, 236, 429, 534, 573
MhlI GDGCHC 1 cut(s) 464
MluCI AATT 4 cut(s) 389, 445, 614, 700
MlyI GAGTC 2 cut(s) 173, 463
MspR9I CCNGG 2 cut(s) 170, 645
MvaI CCWGG 2 cut(s) 170, 645
NdeI CATATG 1 cut(s) 658
NdeII GATC 3 cut(s) 52, 274, 742
NheI GCTAGC 1 cut(s) 380
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 195
NmeAIII GCCGAG 1 cut(s) 523
PcsI WCGNNNNNNNCGW 2 cut(s) 350, 495
PfeI GAWTC 3 cut(s) 80, 358, 709
PkrI GCNGC 4 cut(s) 7, 432, 634, 650
PleI GAGTC 2 cut(s) 172, 462
PpsI GAGTC 2 cut(s) 172, 462
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 168, 643
PspGI CCWGG 2 cut(s) 168, 643
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 3 cut(s) 193, 252, 495
PspPPI RGGWCCY 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 457
RsaI GTAC 3 cut(s) 44, 270, 663
RsaNI GTAC 3 cut(s) 43, 269, 662
SatI GCNGC 4 cut(s) 6, 431, 633, 649
Sau3AI GATC 3 cut(s) 52, 274, 742
Sau96I GGNCC 3 cut(s) 193, 252, 495
SchI GAGTC 2 cut(s) 173, 463
ScrFI CCNGG 2 cut(s) 170, 645
SduI GDGCHC 1 cut(s) 464
SfaNI GCATC 1 cut(s) 300
SinI GGWCC 2 cut(s) 193, 252
Sse9I AATT 4 cut(s) 389, 445, 614, 700
SsiI CCGC 2 cut(s) 329, 428
SspMI CTAG 4 cut(s) 218, 381, 398, 693
StyD4I CCNGG 2 cut(s) 168, 643
StyI CCWWGG 1 cut(s) 692
TaaI ACNGT 3 cut(s) 301, 561, 611
TaqI TCGA 4 cut(s) 177, 183, 344, 489
TasI AATT 4 cut(s) 389, 445, 614, 700
TatI WGTACW 1 cut(s) 661
TfiI GAWTC 3 cut(s) 80, 358, 709
TscAI CASTG 3 cut(s) 91, 262, 616
TseI GCWGC 4 cut(s) 5, 430, 632, 648
TspDTI ATGAA 2 cut(s) 534, 609
TspRI CASTG 3 cut(s) 91, 262, 616
VneI GTGCAC 1 cut(s) 460
VpaK11BI GGWCC 2 cut(s) 193, 252
XapI RAATTY 1 cut(s) 614
XmaJI CCTAGG 1 cut(s) 692
XspI CTAG 4 cut(s) 218, 381, 398, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.