FvH4_3g15360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013488
Physical Location & Seq
Forward (+)
9537715 .. 9539601
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15360.t1

Sequence Viewer

Length: 768 bp
ATGGCTGCTGAGGTTAGCTCTCTGTTTCGGGTCCTCAGTGGCTACAACGATGATCAACAACATCTTAGCATGGGTAGTGAATCCAGTGGTGACAAATCAACGGCTCTGATTACAAGAGACTTGCTTGGTGGCGGGTCTTCTTCTTCTTCCAAGCTTTCAAACGAGTCTCAGGAACTCGACCTCGATTTACAGGTCCCTAATGGCTGGGAAAAGCGCCTAGACTTGAAGTCAGGGAAAGTGTATCTTCAAAGGTCCAGTGCTGTTTCGATCTCGGATCATCAAAGCCACCGCAATCCAACAGTTCCCATGATGCAAGACCTGAACTTGAACTTTCCGCCATCACCATCCTCGAAAACCCCGTTAAAACTCTTTGATGATACGAGCACTAGCCTTGAATTGAAGCTAGTATCCTCATCCTCATCACCACCACCTCAGCAGCCATCTCCTTGCAATTTCCAGAGTCTGTGCACCTTGGACAAAGTAAAGTCTGCACTGGAAAGGGCTGAGAGAGAACCGATCAAGAAGCGCGCCACTTCCTTGTGGAAGTCTTCATTGTCATCCTCGCCATCTTACGCATCCTCTTCGTCTTCCATCAAGGAAACTCAGGAGGAGGACAGTGAATTTTCTTCTCCTTTCGCAGCGGGGTGTCCTGGCTGCTTGTCATATGTTCTGATCATGAGAAATAACCCGAAATGTCCTAGGTGCAATTCAGTGATTCCAATGCCCATGTCAAAGAAATCTCGAATTGATCTCAACAGAACAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

27.8

Weight (kDa)

8.17

Isoelectric Point (pI)

66.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn-ribbon_GIR1 PF24747 214 - 238 5e-07 GIR1-like zinc ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79160
fragaria_vesca FvH4_3g15360
malus_domestica MD05G1223700.v1.1 MD10G1205200.v1.1
prunus_persica Prupe.4G136500_v2.0.a1
pyrus_communis pycom05g20660 pycom10g17570
rosa_chinensis RchiOBHm_Chr5g0025801
rosa_laevigata RLG00000032876
rosa_multiflora Rmu_sc0005610.1_g000005
rosa_roxburghii Rroxscaffold_1G00053400 Rroxscaffold_1G00054340
rosa_rugosa Rorug05G0088600
rosa_samantha Rh5AG180700 Rh5BG179300 Rh5CG197100 Rh5DG179000
rosa_wichuraiana Rw5G016390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 528
AciI CCGC 4 cut(s) 132, 289, 335, 641
AclWI GGATC 1 cut(s) 282
AcsI RAATTY 1 cut(s) 620
AgsI TTSAA 6 cut(s) 159, 226, 248, 328, 395, 400
AhdI GACNNNNNGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 649
AluBI AGCT 3 cut(s) 18, 154, 403
AluI AGCT 3 cut(s) 18, 154, 403
Alw21I GWGCWC 2 cut(s) 386, 470
Alw26I GTCTC 2 cut(s) 111, 171
Alw44I GTGCAC 1 cut(s) 466
AlwI GGATC 1 cut(s) 282
AlwNI CAGNNNCTG 1 cut(s) 463
ApaLI GTGCAC 1 cut(s) 466
ApeKI GCWGC 4 cut(s) 5, 436, 638, 654
ApoI RAATTY 1 cut(s) 620
AspA2I CCTAGG 1 cut(s) 698
AspLEI GCGC 3 cut(s) 216, 528, 530
AspS9I GGNCC 3 cut(s) 31, 193, 252
AsuHPI GGTGA 3 cut(s) 101, 333, 414
AvaII GGWCC 3 cut(s) 31, 193, 252
AvrII CCTAGG 1 cut(s) 698
BaeGI GKGCMC 1 cut(s) 470
BbsI GAAGAC 3 cut(s) 129, 540, 579
Bbv12I GWGCWC 2 cut(s) 386, 470
BbvCI CCTCAGC 2 cut(s) 9, 432
BbvI GCAGC 3 cut(s) 448, 641, 650
BccI CCATC 5 cut(s) 346, 352, 448, 574, 599
BceAI ACGGC 1 cut(s) 117
BcgI CGANNNNNNTGC 2 cut(s) 564, 598
BciT130I CCWGG 1 cut(s) 651
BciVI GTATCC 1 cut(s) 418
BclI TGATCA 2 cut(s) 52, 672
BcoDI GTCTC 2 cut(s) 111, 171
BfaI CTAG 4 cut(s) 218, 387, 404, 699
BfoI RGCGCY 1 cut(s) 217
BfuI GTATCC 1 cut(s) 418
BisI GCNGC 4 cut(s) 6, 437, 639, 655
BlnI CCTAGG 1 cut(s) 698
BlsI GCNGC 4 cut(s) 7, 438, 640, 656
Bme1390I CCNGG 1 cut(s) 651
Bme18I GGWCC 3 cut(s) 31, 193, 252
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgT120I GGNCC 3 cut(s) 31, 193, 252
BmiI GGNNCC 2 cut(s) 32, 195
BmrFI CCNGG 1 cut(s) 651
BmsI GCATC 2 cut(s) 300, 584
BpiI GAAGAC 3 cut(s) 129, 540, 579
BplI GAGNNNNNCTC 1 cut(s) 34
Bpu10I CCTNAGC 2 cut(s) 9, 432
BsaJI CCNNGG 2 cut(s) 471, 698
Bse1I ACTGG 3 cut(s) 84, 255, 498
BseBI CCWGG 1 cut(s) 651
BseDI CCNNGG 2 cut(s) 471, 698
BseGI GGATG 4 cut(s) 344, 413, 557, 575
BseMII CTCAG 5 cut(s) 49, 182, 446, 495, 617
BseNI ACTGG 3 cut(s) 84, 255, 498
BsePI GCGCGC 1 cut(s) 526
BseRI GAGGAG 1 cut(s) 623
BseSI GKGCMC 1 cut(s) 470
BseXI GCAGC 3 cut(s) 448, 641, 650
BseYI CCCAGC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 474
Bsh1236I CGCG 1 cut(s) 528
BsiHKAI GWGCWC 2 cut(s) 386, 470
BslFI GGGAC 1 cut(s) 179
BsmAI GTCTC 2 cut(s) 111, 171
BsmFI GGGAC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 386, 470
Bsp143I GATC 6 cut(s) 52, 267, 274, 516, 672, 748
BspACI CCGC 4 cut(s) 132, 289, 335, 641
BspCNI CTCAG 5 cut(s) 48, 181, 445, 496, 616
BspFNI CGCG 1 cut(s) 528
BspHI TCATGA 1 cut(s) 675
BspLI GGNNCC 2 cut(s) 32, 195
BspPI GGATC 1 cut(s) 282
BsrI ACTGG 3 cut(s) 84, 255, 498
BssECI CCNNGG 2 cut(s) 471, 698
BssHII GCGCGC 1 cut(s) 526
BssMI GATC 6 cut(s) 52, 267, 274, 516, 672, 748
BssT1I CCWWGG 2 cut(s) 471, 698
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 2 cut(s) 301, 617
Bst6I CTCTTC 1 cut(s) 586
BstC8I GCNNGC 1 cut(s) 528
BstDEI CTNAG 7 cut(s) 9, 35, 65, 168, 432, 504, 603
BstF5I GGATG 4 cut(s) 344, 413, 557, 575
BstFNI CGCG 1 cut(s) 528
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 3 cut(s) 216, 528, 530
BstKTI GATC 6 cut(s) 55, 270, 277, 519, 675, 751
BstMAI GTCTC 2 cut(s) 111, 171
BstMBI GATC 6 cut(s) 52, 267, 274, 516, 672, 748
BstNI CCWGG 1 cut(s) 651
BstSCI CCNGG 1 cut(s) 649
BstSLI GKGCMC 1 cut(s) 470
BstUI CGCG 1 cut(s) 528
BstV1I GCAGC 3 cut(s) 448, 641, 650
BstV2I GAAGAC 3 cut(s) 129, 540, 579
BsuI GTATCC 1 cut(s) 418
BtsCI GGATG 4 cut(s) 344, 413, 557, 575
BtsIMutI CAGTG 6 cut(s) 43, 91, 262, 491, 622, 717
Cac8I GCNNGC 1 cut(s) 528
CaiI CAGNNNCTG 1 cut(s) 463
CciI TCATGA 1 cut(s) 675
CfoI GCGC 3 cut(s) 216, 528, 530
Cfr13I GGNCC 3 cut(s) 31, 193, 252
CviAII CATG 4 cut(s) 70, 307, 676, 727
DdeI CTNAG 7 cut(s) 9, 35, 65, 168, 432, 504, 603
DpnI GATC 6 cut(s) 54, 269, 276, 518, 674, 750
DpnII GATC 6 cut(s) 52, 267, 274, 516, 672, 748
DriI GACNNNNNGTC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 586
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 586
EciI GGCGGA 1 cut(s) 324
Eco130I CCWWGG 2 cut(s) 471, 698
Eco47I GGWCC 3 cut(s) 31, 193, 252
EcoO109I RGGNCCY 2 cut(s) 31, 193
EcoRII CCWGG 1 cut(s) 649
EcoT14I CCWWGG 2 cut(s) 471, 698
ErhI CCWWGG 2 cut(s) 471, 698
FaeI CATG 4 cut(s) 73, 310, 679, 730
FaiI YATR 6 cut(s) 71, 308, 664, 666, 677, 728
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FaqI GGGAC 1 cut(s) 179
FatI CATG 4 cut(s) 69, 306, 675, 726
FauI CCCGC 2 cut(s) 125, 634
FauNDI CATATG 1 cut(s) 664
FbaI TGATCA 2 cut(s) 52, 672
Fnu4HI GCNGC 4 cut(s) 6, 437, 639, 655
FokI GGATG 4 cut(s) 331, 400, 544, 562
Fsp4HI GCNGC 4 cut(s) 6, 437, 639, 655
FspBI CTAG 4 cut(s) 218, 387, 404, 699
GlaI GCGC 3 cut(s) 215, 527, 529
GluI GCNGC 4 cut(s) 6, 437, 639, 655
GsaI CCCAGC 1 cut(s) 208
HaeII RGCGCY 1 cut(s) 217
HhaI GCGC 3 cut(s) 216, 528, 530
Hin1II CATG 4 cut(s) 73, 310, 679, 730
Hin6I GCGC 3 cut(s) 214, 526, 528
HinP1I GCGC 3 cut(s) 214, 526, 528
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 4 cut(s) 80, 164, 460, 715
HphI GGTGA 3 cut(s) 101, 333, 414
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 3 cut(s) 108, 274, 672
Hpy188III TCNNGA 6 cut(s) 170, 457, 520, 605, 676, 741
Hpy8I GTNNAC 1 cut(s) 468
HpyCH4III ACNGT 2 cut(s) 301, 617
HpyCH4V TGCA 5 cut(s) 313, 450, 468, 491, 705
HpyF3I CTNAG 7 cut(s) 9, 35, 65, 168, 432, 504, 603
Hsp92II CATG 4 cut(s) 73, 310, 679, 730
HspAI GCGC 3 cut(s) 214, 526, 528
Ksp22I TGATCA 2 cut(s) 52, 672
Kzo9I GATC 6 cut(s) 52, 267, 274, 516, 672, 748
Lsp1109I GCAGC 3 cut(s) 448, 641, 650
LweI GCATC 2 cut(s) 300, 584
MaeI CTAG 4 cut(s) 218, 387, 404, 699
MaeIII GTNAC 1 cut(s) 89
MalI GATC 6 cut(s) 54, 269, 276, 518, 674, 750
MboI GATC 6 cut(s) 52, 267, 274, 516, 672, 748
MboII GAAGA 9 cut(s) 129, 132, 135, 138, 236, 540, 573, 579, 618
MhlI GDGCHC 2 cut(s) 386, 470
MluCI AATT 5 cut(s) 395, 451, 620, 706, 744
MlyI GAGTC 2 cut(s) 173, 469
MmeI TCCRAC 1 cut(s) 320
MseI TTAA 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 641
MspR9I CCNGG 1 cut(s) 651
MvaI CCWGG 1 cut(s) 651
MvnI CGCG 1 cut(s) 528
NdeI CATATG 1 cut(s) 664
NdeII GATC 6 cut(s) 52, 267, 274, 516, 672, 748
NlaIII CATG 4 cut(s) 73, 310, 679, 730
NlaIV GGNNCC 2 cut(s) 32, 195
NmuCI GTSAC 1 cut(s) 89
PagI TCATGA 1 cut(s) 675
PauI GCGCGC 1 cut(s) 526
PcsI WCGNNNNNNNCGW 1 cut(s) 356
PfeI GAWTC 2 cut(s) 80, 715
PkrI GCNGC 4 cut(s) 7, 438, 640, 656
PleI GAGTC 2 cut(s) 172, 468
PpsI GAGTC 2 cut(s) 172, 468
PpuMI RGGWCCY 2 cut(s) 31, 193
Psp5II RGGWCCY 2 cut(s) 31, 193
Psp6I CCWGG 1 cut(s) 649
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 2 cut(s) 32, 195
PspPI GGNCC 3 cut(s) 31, 193, 252
PspPPI RGGWCCY 2 cut(s) 31, 193
PstNI CAGNNNCTG 1 cut(s) 463
PteI GCGCGC 1 cut(s) 526
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 4 cut(s) 6, 437, 639, 655
Sau3AI GATC 6 cut(s) 52, 267, 274, 516, 672, 748
Sau96I GGNCC 3 cut(s) 31, 193, 252
SchI GAGTC 2 cut(s) 173, 469
ScrFI CCNGG 1 cut(s) 651
SduI GDGCHC 2 cut(s) 386, 470
SfaNI GCATC 2 cut(s) 300, 584
SinI GGWCC 3 cut(s) 31, 193, 252
Sse9I AATT 5 cut(s) 395, 451, 620, 706, 744
SsiI CCGC 4 cut(s) 132, 289, 335, 641
SspMI CTAG 4 cut(s) 218, 387, 404, 699
StyD4I CCNGG 1 cut(s) 649
StyI CCWWGG 2 cut(s) 471, 698
TaaI ACNGT 2 cut(s) 301, 617
TaqI TCGA 5 cut(s) 177, 183, 266, 350, 742
TasI AATT 5 cut(s) 395, 451, 620, 706, 744
TfiI GAWTC 2 cut(s) 80, 715
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 6 cut(s) 43, 91, 262, 498, 622, 717
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 4 cut(s) 5, 436, 638, 654
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 540
TspRI CASTG 6 cut(s) 43, 91, 262, 498, 622, 717
VneI GTGCAC 1 cut(s) 466
VpaK11BI GGWCC 3 cut(s) 31, 193, 252
XapI RAATTY 1 cut(s) 620
XmaJI CCTAGG 1 cut(s) 698
XspI CTAG 4 cut(s) 218, 387, 404, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.