AT1G79770

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015897
Physical Location & Seq
Forward (+)
30014233 .. 30015392
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79770.1

Sequence Viewer

Length: 504 bp
ATGGCAGCAAACGGGAGAAGGAAGAGCGTGAGCGGAAGCTTGGTGAAGCCGCCCCCGCCAAAGGTAGGGAAAAAGTCACTGCATAGGTCCCTGTCAGACATATCGCTGGATTATCACAGAGAAGAAGAGAAAGGACTGGGGACGATAGTGGAGGTAGAGAAGGCAAAGTGCGAGTGCTGCGGGATGAGGGAGGAGTGCACGATGGAGTACATAGAGAGGGTGAGGGAGAAGTTCTTTGGGAAGTGGATATGCGGACTGTGCTCAGAGGCGGTGAAGGAGGAGAGGGATAAGAGGGAAGAGGAAGGGCTAGAAGGGGCCTTGAAGGAGCACATGAGCGCCTGCCTCAGGTTCAACAAGCTCGGGAGGGAGTATCCGGCTCTCTTCCAAGCTGATGCCATGAGAGATATGCTCCGGAGAAGCACGAGGGGTCAGTCTATTATCCCTAAGCCCGCCATTTCCCGTACTTCAAGCTGTATTCCTGCCATCACCAGGGACCTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

167

Amino Acids

18.91

Weight (kDa)

8.92

Isoelectric Point (pI)

62.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 52 - 142 1.1e-36 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79770
fragaria_vesca FvH4_6g32260
malus_domestica MD09G1205300.v1.1 MD17G1185200.v1.1
prunus_persica Prupe.3G060600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0140141
rosa_laevigata RLG00000019855
rosa_multiflora Rmu_sc0003244.1_g000018
rosa_roxburghii Rroxscaffold_2G00105010
rosa_rugosa Rorug02G0361400
rosa_samantha Rh2AG412100 Rh2BG422500 Rh2CG398200 Rh2DG431800
rosa_wichuraiana Rw2G033770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 411
AciI CCGC 7 cut(s) 33, 50, 56, 180, 252, 269, 450
AfaI GTAC 2 cut(s) 209, 463
AfiI CCNNNNNNNGG 4 cut(s) 61, 65, 345, 489
AgsI TTSAA 3 cut(s) 322, 352, 468
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 4 cut(s) 39, 358, 389, 471
AluI AGCT 4 cut(s) 39, 358, 389, 471
Alw21I GWGCWC 3 cut(s) 200, 263, 330
Alw44I GTGCAC 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 359
Aor13HI TCCGGA 1 cut(s) 411
AoxI GGCC 1 cut(s) 315
ApaLI GTGCAC 1 cut(s) 196
ApeKI GCWGC 2 cut(s) 5, 177
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 3 cut(s) 87, 315, 493
AsuHPI GGTGA 4 cut(s) 55, 232, 283, 478
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 2 cut(s) 87, 493
AxyI CCTNAGG 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 200
BauI CACGAG 1 cut(s) 421
Bbv12I GWGCWC 3 cut(s) 200, 263, 330
BbvI GCAGC 2 cut(s) 17, 164
BccI CCATC 2 cut(s) 196, 491
BciT130I CCWGG 1 cut(s) 490
BciVI GTATCC 1 cut(s) 381
BfaI CTAG 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 339
BfuI GTATCC 1 cut(s) 381
BisI GCNGC 3 cut(s) 6, 50, 178
BlsI GCNGC 3 cut(s) 7, 51, 179
Bme1390I CCNGG 1 cut(s) 490
Bme18I GGWCC 2 cut(s) 87, 493
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 3 cut(s) 87, 315, 493
BmiI GGNNCC 3 cut(s) 89, 316, 494
BmrFI CCNGG 1 cut(s) 490
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 382
BmuI ACTGGG 1 cut(s) 146
BplI GAGNNNNNCTC 2 cut(s) 393, 425
Bpu10I CCTNAGC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 411
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 65, 345, 489
Bse1I ACTGG 1 cut(s) 141
Bse21I CCTNAGG 1 cut(s) 344
BseAI TCCGGA 1 cut(s) 411
BseBI CCWGG 1 cut(s) 490
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 4 cut(s) 61, 65, 345, 489
BseMII CTCAG 2 cut(s) 276, 358
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 2 cut(s) 206, 293
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 2 cut(s) 17, 164
BshFI GGCC 1 cut(s) 317
BsiHKAI GWGCWC 3 cut(s) 200, 263, 330
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 2 cut(s) 374, 412
BslFI GGGAC 2 cut(s) 73, 154
BslI CCNNNNNNNGG 4 cut(s) 61, 65, 345, 489
BsmFI GGGAC 2 cut(s) 73, 154
BsnI GGCC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 3 cut(s) 200, 263, 330
Bsp13I TCCGGA 1 cut(s) 411
BspACI CCGC 7 cut(s) 33, 50, 56, 180, 252, 269, 450
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 2 cut(s) 275, 357
BspEI TCCGGA 1 cut(s) 411
BspLI GGNNCC 3 cut(s) 89, 316, 494
BspQI GCTCTTC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 33
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 489
BssSI CACGAG 1 cut(s) 421
Bst2BI CACGAG 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 490
Bst4CI ACNGT 1 cut(s) 258
Bst6I CTCTTC 4 cut(s) 17, 120, 291, 386
BstC8I GCNNGC 2 cut(s) 340, 450
BstDEI CTNAG 3 cut(s) 262, 344, 444
BstENI CCTNNNNNAGG 1 cut(s) 343
BstF5I GGATG 1 cut(s) 189
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 1 cut(s) 338
BstMWI GCNNNNNNNGC 3 cut(s) 55, 177, 258
BstNI CCWGG 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 488
BstSLI GKGCMC 1 cut(s) 200
BstV1I GCAGC 2 cut(s) 17, 164
Bsu36I CCTNAGG 1 cut(s) 344
BsuI GTATCC 1 cut(s) 381
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 2 cut(s) 340, 450
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 3 cut(s) 87, 315, 493
Csp6I GTAC 2 cut(s) 208, 462
CviAII CATG 2 cut(s) 331, 397
CviJI RGCY 9 cut(s) 39, 49, 307, 317, 358, 377, 389, 448, 471
CviKI_1 RGCY 9 cut(s) 39, 49, 307, 317, 358, 377, 389, 448, 471
CviQI GTAC 2 cut(s) 208, 462
DdeI CTNAG 3 cut(s) 262, 344, 444
Eam1104I CTCTTC 4 cut(s) 17, 120, 291, 386
EarI CTCTTC 4 cut(s) 17, 120, 291, 386
Eco47I GGWCC 2 cut(s) 87, 493
Eco81I CCTNAGG 1 cut(s) 344
Eco88I CYCGRG 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 343
EcoO109I RGGNCCY 3 cut(s) 87, 315, 493
EcoRII CCWGG 1 cut(s) 488
FaeI CATG 2 cut(s) 334, 400
FaiI YATR 7 cut(s) 84, 101, 212, 250, 332, 398, 407
FaqI GGGAC 2 cut(s) 73, 154
FatI CATG 2 cut(s) 330, 396
FauI CCCGC 3 cut(s) 63, 173, 457
Fnu4HI GCNGC 3 cut(s) 6, 50, 178
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 3 cut(s) 6, 50, 178
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 337
GluI GCNGC 3 cut(s) 6, 50, 178
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 1 cut(s) 317
HapII CCGG 2 cut(s) 374, 412
HhaI GCGC 1 cut(s) 338
Hin1II CATG 2 cut(s) 334, 400
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 37
HpaII CCGG 2 cut(s) 374, 412
HphI GGTGA 4 cut(s) 55, 232, 283, 478
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 2 cut(s) 97, 265
Hpy188III TCNNGA 2 cut(s) 361, 412
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 6 cut(s) 12, 154, 268, 296, 305, 316
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 82, 198
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 177, 258
HpyF3I CTNAG 3 cut(s) 262, 344, 444
Hsp92II CATG 2 cut(s) 334, 400
HspAI GCGC 1 cut(s) 336
Kpn2I TCCGGA 1 cut(s) 411
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 2 cut(s) 325, 414
LpnPI CCDG 9 cut(s) 92, 104, 122, 331, 352, 387, 425, 475, 492
Lsp1109I GCAGC 2 cut(s) 17, 164
LweI GCATC 1 cut(s) 382
MaeI CTAG 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 75
MbiI CCGCTC 1 cut(s) 33
MboII GAAGA 5 cut(s) 34, 134, 137, 308, 373
MhlI GDGCHC 3 cut(s) 200, 263, 330
MluCI AATT 1 cut(s) 499
MroI TCCGGA 1 cut(s) 411
MseI TTAA 2 cut(s) 498, 502
MspI CCGG 2 cut(s) 374, 412
MspR9I CCNGG 1 cut(s) 490
MvaI CCWGG 1 cut(s) 490
MwoI GCNNNNNNNGC 3 cut(s) 55, 177, 258
NlaIII CATG 2 cut(s) 334, 400
NlaIV GGNNCC 3 cut(s) 89, 316, 494
NmuCI GTSAC 1 cut(s) 75
PacI TTAATTAA 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 17
PkrI GCNGC 3 cut(s) 7, 51, 179
PpuMI RGGWCCY 2 cut(s) 87, 493
Psp5II RGGWCCY 2 cut(s) 87, 493
Psp6I CCWGG 1 cut(s) 488
PspGI CCWGG 1 cut(s) 488
PspN4I GGNNCC 3 cut(s) 89, 316, 494
PspPI GGNCC 3 cut(s) 87, 315, 493
PspPPI RGGWCCY 2 cut(s) 87, 493
RsaI GTAC 2 cut(s) 209, 463
RsaNI GTAC 2 cut(s) 208, 462
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 498, 502
SatI GCNGC 3 cut(s) 6, 50, 178
Sau96I GGNCC 3 cut(s) 87, 315, 493
ScrFI CCNGG 1 cut(s) 490
SduI GDGCHC 3 cut(s) 200, 263, 330
SetI ASST 9 cut(s) 41, 66, 89, 156, 350, 360, 391, 473, 498
SfaNI GCATC 1 cut(s) 382
SinI GGWCC 2 cut(s) 87, 493
Sse9I AATT 1 cut(s) 499
SsiI CCGC 7 cut(s) 33, 50, 56, 180, 252, 269, 450
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 488
TaaI ACNGT 1 cut(s) 258
TasI AATT 1 cut(s) 499
TatI WGTACW 1 cut(s) 207
TauI GCSGC 1 cut(s) 52
Tru1I TTAA 2 cut(s) 498, 502
Tru9I TTAA 2 cut(s) 498, 502
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 1 cut(s) 75
TseI GCWGC 2 cut(s) 5, 177
Tsp45I GTSAC 1 cut(s) 75
TspRI CASTG 1 cut(s) 84
VneI GTGCAC 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 87, 493
XagI CCTNNNNNAGG 1 cut(s) 343
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.