Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015897

Physical Location & Seq

Genomic Coordinates Forward (+)

4361852 .. 4363224

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G060600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCACCTAATGGAGAGACAATTGTTGGCTCTAACTACTCAAGGACCAACAACTTCTCCAAGTCCAAGCCACCAAAGCTCTCATTCTCATCCGATAGCCTTAAAAGAACTGTATCTGATATCTCATATGAGCTAAGCAAAGAAGCCGTTGATCAAGATTTGCAATCCCTCCCACCAATTTCAGAGGTTGAAGATGCAAAGTGTGAGTGTTGTGGCATGAGCGAAGAATGCACGCCGGAGTACATAGATCGAGTGAGAGACAAATTCTTGGGGAAGTGGATATGCGGGTTATGCTCTGAAGCAGTGAAAGAGGAGCTGGAGAAAAATGGAGGAGATAAAGAAGAGGCCATGAATGCACATATAAGTGCATGTGTTAGGTTTAACAAGTACAGTAGGCCTTATCCAGTTTTGTTTCAAGCTGAGGCCATGAGGGAGATGTTGAAGAAGAGCAAAATGGAAGGGAGAGGTATGAGGGCCAAGTCGATTAGCCCGAGGGACAAAGGAGGGGCAAAGGGAAAGGGAGGGATTGCTCGGAGTTCGAGTTGCATTCCGGCGATTACGAGGGAAATGAATGATCTCTCCATGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1677

Protein Analysis

197

Amino Acids

21.64

Weight (kDa)

8.06

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79770
fragaria_vesca	FvH4_6g32260
malus_domestica	MD09G1205300.v1.1 MD17G1185200.v1.1
prunus_persica	Prupe.3G060600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0140141
rosa_laevigata	RLG00000019855
rosa_multiflora	Rmu_sc0003244.1_g000018
rosa_roxburghii	Rroxscaffold_2G00105010
rosa_rugosa	Rorug02G0361400
rosa_samantha	Rh2AG412100 Rh2BG422500 Rh2CG398200 Rh2DG431800
rosa_wichuraiana	Rw2G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	2 cut(s)	242, 389
AgsI	TTSAA	3 cut(s)	191, 416, 442
AluBI	AGCT	4 cut(s)	79, 133, 316, 419
AluI	AGCT	4 cut(s)	79, 133, 316, 419
Alw26I	GTCTC	2 cut(s)	11, 252
Ama87I	CYCGRG	1 cut(s)	490
AoxI	GGCC	4 cut(s)	345, 395, 423, 474
ApoI	RAATTY	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	45, 474
AvaI	CYCGRG	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	420
BceAI	ACGGC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	11, 252
BlpI	GCTNAGC	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	45
BmeT110I	CYCGRG	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	45, 474
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu1102I	GCTNAGC	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	491, 582
BsaXI	ACNNNNNCTCC	4 cut(s)	41, 71, 526, 556
Bse1I	ACTGG	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	491, 582
BseGI	GGATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	2 cut(s)	326, 345
BshFI	GGCC	4 cut(s)	347, 397, 425, 476
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	236, 551
BslFI	GGGAC	1 cut(s)	509
BsmAI	GTCTC	2 cut(s)	11, 252
BsmFI	GGGAC	1 cut(s)	509
BsmI	GAATGC	3 cut(s)	233, 358, 546
BsnI	GGCC	4 cut(s)	347, 397, 425, 476
BsoBI	CYCGRG	1 cut(s)	490
Bsp143I	GATC	3 cut(s)	151, 247, 574
Bsp1720I	GCTNAGC	1 cut(s)	134
Bsp19I	CCATGG	1 cut(s)	582
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	4 cut(s)	347, 397, 425, 476
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	6
BspQI	GCTCTTC	1 cut(s)	440
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	404
BssECI	CCNNGG	2 cut(s)	491, 582
BssMI	GATC	3 cut(s)	151, 247, 574
BssT1I	CCWWGG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	112, 392
Bst6I	CTCTTC	2 cut(s)	336, 440
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	2 cut(s)	134, 420
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	3 cut(s)	154, 250, 577
BstMAI	GTCTC	2 cut(s)	11, 252
BstMBI	GATC	3 cut(s)	151, 247, 574
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 228, 291, 353
BstNSI	RCATGY	1 cut(s)	372
BsuRI	GGCC	4 cut(s)	347, 397, 425, 476
BtgI	CCRYGG	1 cut(s)	582
BtsCI	GGATG	1 cut(s)	89
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	45, 474
Csp6I	GTAC	2 cut(s)	241, 388
CviAII	CATG	5 cut(s)	217, 349, 369, 427, 583
CviQI	GTAC	2 cut(s)	241, 388
DdeI	CTNAG	2 cut(s)	134, 420
DpnI	GATC	3 cut(s)	153, 249, 576
DpnII	GATC	3 cut(s)	151, 247, 574
Eam1104I	CTCTTC	2 cut(s)	336, 440
EarI	CTCTTC	2 cut(s)	336, 440
Eco130I	CCWWGG	1 cut(s)	582
Eco147I	AGGCCT	1 cut(s)	397
Eco32I	GATATC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	5 cut(s)	220, 352, 372, 430, 586
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	5 cut(s)	216, 348, 368, 426, 582
FauI	CCCGC	1 cut(s)	278
FauNDI	CATATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	151
FokI	GGATG	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	4 cut(s)	347, 397, 425, 476
HapII	CCGG	2 cut(s)	236, 551
Hin1II	CATG	5 cut(s)	220, 352, 372, 430, 586
HpaII	CCGG	2 cut(s)	236, 551
Hpy188I	TCNGA	5 cut(s)	94, 118, 184, 298, 534
Hpy188III	TCNNGA	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	452
HpyCH4III	ACNGT	2 cut(s)	112, 392
HpyCH4V	TGCA	6 cut(s)	163, 197, 231, 356, 368, 546
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 228, 291, 353
HpyF3I	CTNAG	2 cut(s)	134, 420
Hsp92II	CATG	5 cut(s)	220, 352, 372, 430, 586
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	151, 247, 574
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	4 cut(s)	249, 302, 417, 564
LweI	GCATC	1 cut(s)	184
MalI	GATC	3 cut(s)	153, 249, 576
MboI	GATC	3 cut(s)	151, 247, 574
MboII	GAAGA	5 cut(s)	203, 236, 353, 454, 457
MfeI	CAATTG	1 cut(s)	21
MluCI	AATT	3 cut(s)	21, 177, 263
MseI	TTAA	2 cut(s)	102, 381
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	2 cut(s)	236, 551
MunI	CAATTG	1 cut(s)	21
Mva1269I	GAATGC	3 cut(s)	233, 358, 546
MwoI	GCNNNNNNNGC	4 cut(s)	76, 228, 291, 353
NcoI	CCATGG	1 cut(s)	582
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	3 cut(s)	151, 247, 574
NlaIII	CATG	5 cut(s)	220, 352, 372, 430, 586
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	397
PciSI	GCTCTTC	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PctI	GAATGC	3 cut(s)	233, 358, 546
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	45, 474
RsaI	GTAC	2 cut(s)	242, 389
RsaNI	GTAC	2 cut(s)	241, 388
RseI	CAYNNNNRTG	1 cut(s)	363
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	2 cut(s)	102, 381
Sau3AI	GATC	3 cut(s)	151, 247, 574
Sau96I	GGNCC	2 cut(s)	45, 474
SetI	ASST	8 cut(s)	10, 81, 135, 189, 318, 380, 421, 469
SfaNI	GCATC	1 cut(s)	184
SinI	GGWCC	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	3 cut(s)	21, 177, 263
SseBI	AGGCCT	1 cut(s)	397
SsiI	CCGC	1 cut(s)	285
StuI	AGGCCT	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	2 cut(s)	112, 392
TaqI	TCGA	3 cut(s)	250, 482, 539
TasI	AATT	3 cut(s)	21, 177, 263
TatI	WGTACW	2 cut(s)	240, 387
Tru1I	TTAA	2 cut(s)	102, 381
Tru9I	TTAA	2 cut(s)	102, 381
TscAI	CASTG	1 cut(s)	309
TspDTI	ATGAA	2 cut(s)	365, 584
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.