Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014510

Physical Location & Seq

Genomic Coordinates Forward (+)

30133718 .. 30134937

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTGGGGTTGGGTGTGGACCGGCTTCAAGCCGACATCAACCGGCTCCTAGCCTCTCTTTTCCACCAGGGAGTGCTGGACGAGCAGTTCTTGCAGCTTCAGCAGCTTCAAGATGAGACTTCACCAAACTTTGTGTATGATGTCATTAATATCTACTTTGATGAATCCGAGAAGTTACTCCGCAACCTTAGATTATTGTTGATGGATAGAGAATTCTCGGACTATAAGAAAATAGGATTACACCTGAATCAGCTGGTGGGAAGCAGTTCAAGCATTGGTGCTCGTAGGGTTCGTAACGTCTGCGTTGCCTTTCGTTCTGCTTCCGAGCTTAGCAACCGCCCAGGGTGCTTGAGAGGACTGGAGGTAGTAGAGCATGAGTATCATTACCTCAAGAACATGATGCATGAACTCTTCCAGCTGGAGCAGCAGAGAATATTAGCTGCAGGAGTCAGATATCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0016310 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044237 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

154

Amino Acids

17.85

Weight (kDa)

6.2

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	31 - 114	4.6e-06	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80100 AT1G80100 AT1G80100
fragaria_vesca	FvH4_6g29740
malus_domestica	MD17G1211900.v1.1
prunus_persica	Prupe.3G087100_v2.0.a1 Prupe.3G087100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0135431
rosa_laevigata	RLG00000019464
rosa_roxburghii	Rroxscaffold_2G00109250 Rroxscaffold_2G00116740
rosa_rugosa	Rorug02G0324700
rosa_samantha	Rh2AG370100 Rh2BG382000 Rh2CG360700 Rh2DG398300
rosa_wichuraiana	Rw2G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	181, 337
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	29, 110, 270
AjnI	CCWGG	2 cut(s)	66, 340
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
AluBI	AGCT	6 cut(s)	97, 106, 253, 328, 418, 440
AluI	AGCT	6 cut(s)	97, 106, 253, 328, 418, 440
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	110
ApeKI	GCWGC	4 cut(s)	94, 103, 424, 440
ApoI	RAATTY	1 cut(s)	212
AseI	ATTAAT	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	4 cut(s)	106, 115, 427, 436
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	68, 342
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	441
BisI	GCNGC	4 cut(s)	95, 104, 425, 441
BlpI	GCTNAGC	1 cut(s)	329
BlsI	GCNGC	4 cut(s)	96, 105, 426, 442
Bme1390I	CCNGG	2 cut(s)	68, 342
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	47
BmrFI	CCNGG	2 cut(s)	68, 342
BmsI	GCATC	1 cut(s)	390
BpmI	CTGGAG	2 cut(s)	380, 440
Bpu1102I	GCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	2 cut(s)	370, 374
BsaJI	CCNNGG	3 cut(s)	67, 340, 341
Bse118I	RCCGGY	2 cut(s)	21, 42
Bse1I	ACTGG	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	68, 342
BseDI	CCNNGG	3 cut(s)	67, 340, 341
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	4 cut(s)	106, 115, 427, 436
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	22, 43
BsmAI	GTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp1720I	GCTNAGC	1 cut(s)	329
BspACI	CCGC	2 cut(s)	181, 337
BspLI	GGNNCC	1 cut(s)	47
BspMAI	CTGCAG	1 cut(s)	445
BsrFI	RCCGGY	2 cut(s)	21, 42
BsrI	ACTGG	1 cut(s)	363
BssAI	RCCGGY	2 cut(s)	21, 42
BssECI	CCNNGG	3 cut(s)	67, 340, 341
Bst2UI	CCWGG	2 cut(s)	68, 342
Bst6I	CTCTTC	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	188, 329
BstMAI	GTCTC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 91, 100, 103, 270, 345, 424
BstNI	CCWGG	2 cut(s)	68, 342
BstSCI	CCNGG	2 cut(s)	66, 340
BstSFI	CTRYAG	1 cut(s)	441
BstV1I	GCAGC	4 cut(s)	106, 115, 427, 436
Cfr10I	RCCGGY	2 cut(s)	21, 42
Cfr13I	GGNCC	1 cut(s)	19
CviAII	CATG	3 cut(s)	374, 397, 404
DdeI	CTNAG	2 cut(s)	188, 329
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco32I	GATATC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	66, 340
EcoRV	GATATC	1 cut(s)	455
EcoT22I	ATGCAT	1 cut(s)	405
FaeI	CATG	3 cut(s)	377, 400, 407
FaiI	YATR	5 cut(s)	138, 225, 375, 398, 405
FatI	CATG	3 cut(s)	373, 396, 403
Fnu4HI	GCNGC	4 cut(s)	95, 104, 425, 441
Fsp4HI	GCNGC	4 cut(s)	95, 104, 425, 441
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	4 cut(s)	95, 104, 425, 441
GsuI	CTGGAG	2 cut(s)	380, 440
HapII	CCGG	2 cut(s)	22, 43
Hin1II	CATG	3 cut(s)	377, 400, 407
HinfI	GANTC	3 cut(s)	164, 247, 447
HpaII	CCGG	2 cut(s)	22, 43
HphI	GGTGA	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	4 cut(s)	169, 220, 325, 452
Hpy188III	TCNNGA	2 cut(s)	110, 391
Hpy8I	GTNNAC	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	94, 403, 443
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 91, 100, 103, 270, 345, 424
HpyF3I	CTNAG	2 cut(s)	188, 329
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	377, 400, 407
LmnI	GCTCC	2 cut(s)	51, 421
Lsp1109I	GCAGC	4 cut(s)	106, 115, 427, 436
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	174, 293
MboII	GAAGA	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	1 cut(s)	456
MnlI	CCTC	4 cut(s)	64, 347, 355, 398
Mph1103I	ATGCAT	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	265
MseI	TTAA	1 cut(s)	147
MspA1I	CMGCKG	2 cut(s)	253, 418
MspI	CCGG	2 cut(s)	22, 43
MspR9I	CCNGG	2 cut(s)	68, 342
MvaI	CCWGG	2 cut(s)	68, 342
MwoI	GCNNNNNNNGC	7 cut(s)	82, 91, 100, 103, 270, 345, 424
NlaIII	CATG	3 cut(s)	377, 400, 407
NlaIV	GGNNCC	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	405
PasI	CCCWGGG	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	164, 247
PkrI	GCNGC	4 cut(s)	96, 105, 426, 442
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PshBI	ATTAAT	1 cut(s)	147
Psp6I	CCWGG	2 cut(s)	66, 340
PspGI	CCWGG	2 cut(s)	66, 340
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	19
PstI	CTGCAG	1 cut(s)	445
PvuII	CAGCTG	2 cut(s)	253, 418
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	4 cut(s)	95, 104, 425, 441
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	68, 342
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	390
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	2 cut(s)	349, 389
SmoI	CTYRAG	2 cut(s)	349, 389
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	2 cut(s)	181, 337
SspI	AATATT	1 cut(s)	435
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	66, 340
TaiI	ACGT	1 cut(s)	300
TasI	AATT	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	164, 247
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseI	GCWGC	4 cut(s)	94, 103, 424, 440
TspDTI	ATGAA	2 cut(s)	177, 420
VpaK11BI	GGWCC	1 cut(s)	19
VspI	ATTAAT	1 cut(s)	147
XapI	RAATTY	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.