Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0014510

Physical Location & Seq

Genomic Coordinates Reverse (-)

25911289 .. 25912804

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1211900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTTGGGGTTGGGTGTCGATCAGTTGCGAGCAGACATGAATCGTTTGCTCGCGATGCTCTTTCACCAGGGAGTATTGGATGAGCAATTCTTGCAGCTTCAACAACTCCAGGACGAGAGCTCCCCAAACTTTGTTTCTGAAGTTGTGAACATATATTTTCATGAGTCCGAGAAGCTGTTGAGAAATCTCAGAGGATTGTTGATGGATAGGGAGTTCTCGGACTACAAGAAAATGGGAACACATTTGAATCAGTTTATGGGAAGCAGCTCAAGCATTGGTGCCAAGAGAATCAGAAACGTCTGCGTCGCTTTTCGCGCTGCTTCTGAACACAATAACCGTGCTGGGTGCTTGAGAGCCTTAGAGCTGCTGGAACATGAATATTGTTACCTTAAGAACAAACTACATGAATTATTCCAGATACAGCAGCAACGAGTCTTGGCAGCTGGGGTTAGGTACCCAATGCAAAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0016310 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044237 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

158

Amino Acids

18.19

Weight (kDa)

7.79

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	47 - 127	1.1e-07	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80100 AT1G80100 AT1G80100
fragaria_vesca	FvH4_6g29740
malus_domestica	MD17G1211900.v1.1
prunus_persica	Prupe.3G087100_v2.0.a1 Prupe.3G087100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0135431
rosa_laevigata	RLG00000019464
rosa_roxburghii	Rroxscaffold_2G00109250 Rroxscaffold_2G00116740
rosa_rugosa	Rorug02G0324700
rosa_samantha	Rh2AG370100 Rh2BG382000 Rh2CG360700 Rh2DG398300
rosa_wichuraiana	Rw2G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	2 cut(s)	278, 453
AccII	CGCG	2 cut(s)	53, 315
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	455
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	2 cut(s)	101, 247
AjnI	CCWGG	2 cut(s)	66, 108
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	6 cut(s)	97, 120, 175, 267, 364, 443
AluI	AGCT	6 cut(s)	97, 120, 175, 267, 364, 443
Alw21I	GWGCWC	1 cut(s)	122
ApeKI	GCWGC	6 cut(s)	94, 264, 317, 364, 424, 440
Asp718I	GGTACC	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	56
BanI	GGYRCC	2 cut(s)	278, 453
BanII	GRGCYC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	6 cut(s)	106, 276, 304, 351, 436, 452
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	68, 110
BfrI	CTTAAG	1 cut(s)	389
BisI	GCNGC	6 cut(s)	95, 265, 318, 365, 425, 441
BlsI	GCNGC	6 cut(s)	96, 266, 319, 366, 426, 442
Bme1390I	CCNGG	2 cut(s)	68, 110
BmiI	GGNNCC	2 cut(s)	280, 455
BmrFI	CCNGG	2 cut(s)	68, 110
BmsI	GCATC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	92
BpuEI	CTTGAG	2 cut(s)	253, 370
BsaJI	CCNNGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
BseBI	CCWGG	2 cut(s)	68, 110
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	202
BseXI	GCAGC	6 cut(s)	106, 276, 304, 351, 436, 452
BseYI	CCCAGC	2 cut(s)	341, 443
Bsh1236I	CGCG	2 cut(s)	53, 315
BshNI	GGYRCC	2 cut(s)	278, 453
BsiHKAI	GWGCWC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	19
Bsp68I	TCGCGA	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	201
BspFNI	CGCG	2 cut(s)	53, 315
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	280, 455
BspT107I	GGYRCC	2 cut(s)	278, 453
BspTI	CTTAAG	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	68, 110
Bst4CI	ACNGT	1 cut(s)	338
BstAFI	CTTAAG	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	30, 51
BstDEI	CTNAG	2 cut(s)	188, 358
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	2 cut(s)	53, 315
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 91, 270, 314
BstNI	CCWGG	2 cut(s)	68, 110
BstSCI	CCNGG	2 cut(s)	66, 108
BstUI	CGCG	2 cut(s)	53, 315
BstV1I	GCAGC	6 cut(s)	106, 276, 304, 351, 436, 452
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	85
BtuMI	TCGCGA	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	30, 51
CciI	TCATGA	1 cut(s)	160
CfoI	GCGC	1 cut(s)	317
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	4 cut(s)	37, 161, 374, 404
CviJI	RGCY	7 cut(s)	97, 120, 175, 267, 356, 364, 443
CviKI_1	RGCY	7 cut(s)	97, 120, 175, 267, 356, 364, 443
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	2 cut(s)	188, 358
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	120
EcoRII	CCWGG	2 cut(s)	66, 108
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	4 cut(s)	40, 164, 377, 407
FaiI	YATR	7 cut(s)	38, 152, 154, 162, 257, 375, 405
FatI	CATG	4 cut(s)	36, 160, 373, 403
Fnu4HI	GCNGC	6 cut(s)	95, 265, 318, 365, 425, 441
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	6 cut(s)	95, 265, 318, 365, 425, 441
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	6 cut(s)	95, 265, 318, 365, 425, 441
GsaI	CCCAGC	2 cut(s)	345, 447
GsuI	CTGGAG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	4 cut(s)	40, 164, 377, 407
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HinfI	GANTC	5 cut(s)	40, 164, 247, 288, 432
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	6 cut(s)	139, 169, 191, 220, 293, 325
Hpy188III	TCNNGA	3 cut(s)	52, 161, 415
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	94, 463
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 91, 270, 314
HpyF3I	CTNAG	2 cut(s)	188, 358
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	4 cut(s)	40, 164, 377, 407
HspAI	GCGC	1 cut(s)	315
KpnI	GGTACC	1 cut(s)	457
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	8 cut(s)	53, 80, 95, 122, 327, 353, 428, 429
Lsp1109I	GCAGC	6 cut(s)	106, 276, 304, 351, 436, 452
LweI	GCATC	1 cut(s)	45
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	383
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	3 cut(s)	86, 407, 469
MlyI	GAGTC	2 cut(s)	173, 441
MnlI	CCTC	1 cut(s)	185
MseI	TTAA	2 cut(s)	390, 472
MspA1I	CMGCKG	1 cut(s)	443
MspCI	CTTAAG	1 cut(s)	389
MspR9I	CCNGG	2 cut(s)	68, 110
MvaI	CCWGG	2 cut(s)	68, 110
MvnI	CGCG	2 cut(s)	53, 315
MwoI	GCNNNNNNNGC	4 cut(s)	55, 91, 270, 314
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	4 cut(s)	40, 164, 377, 407
NlaIV	GGNNCC	2 cut(s)	280, 455
NruI	TCGCGA	1 cut(s)	53
PagI	TCATGA	1 cut(s)	160
PfeI	GAWTC	3 cut(s)	40, 247, 288
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	6 cut(s)	96, 266, 319, 366, 426, 442
PleI	GAGTC	2 cut(s)	172, 440
PpsI	GAGTC	2 cut(s)	172, 440
Psp124BI	GAGCTC	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	66, 108
PspFI	CCCAGC	2 cut(s)	341, 443
PspGI	CCWGG	2 cut(s)	66, 108
PspN4I	GGNNCC	2 cut(s)	280, 455
PvuII	CAGCTG	1 cut(s)	443
RruI	TCGCGA	1 cut(s)	53
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	390, 472
SatI	GCNGC	6 cut(s)	95, 265, 318, 365, 425, 441
Sau3AI	GATC	1 cut(s)	19
SchI	GAGTC	2 cut(s)	173, 441
ScrFI	CCNGG	2 cut(s)	68, 110
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	9 cut(s)	99, 122, 177, 269, 300, 366, 390, 445, 455
SfaNI	GCATC	1 cut(s)	45
SmlI	CTYRAG	3 cut(s)	268, 349, 389
SmoI	CTYRAG	3 cut(s)	268, 349, 389
Sse9I	AATT	3 cut(s)	86, 407, 469
SspI	AATATT	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	66, 108
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	18
TasI	AATT	3 cut(s)	86, 407, 469
TfiI	GAWTC	3 cut(s)	40, 247, 288
Tru1I	TTAA	2 cut(s)	390, 472
Tru9I	TTAA	2 cut(s)	390, 472
TseI	GCWGC	6 cut(s)	94, 264, 317, 364, 424, 440
TspDTI	ATGAA	4 cut(s)	53, 149, 390, 420
Vha464I	CTTAAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.