Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014510

Physical Location & Seq

Genomic Coordinates Reverse (-)

33402952 .. 33407354

Gene Structure 4403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTTGGGGTTGGGTGTTGATCGGTTGCGAGCCGATATGAATCGGTTGCTCGCAATGCTCTTTCATCAGGGAGTATTGGATGAGCAATTCTTGCAACTGCAGCAGCTTCAAGACGAGAGCTCCCCAAACTTTGTTTCTGAAGTTGTCAACATCTACTTCCAAGAGTCGGAGAAGCTCTTAAGAAATCTCAGAGCGCTTCTGATGGATAGGGAGTTCTCGGACTACAAGAAAATGGGAATCCATTTGAATCAGTTCATCGGAAGCAGCTCAAGCATTGGTGCCAAGAGACTCAGAAACGTCTGCGTTGCTTTTCGAGCCGCTTCTGAACAACACAACCGTGCTGGGTGCTTGAGAGCTTTAGAGCTGCTGGAACATGACTATTGCTACCTCAAGAATAAACTGCACGAGTTATTCCAGACGCTGCACCAAAGAGGTAATATCATGCAGCAACCCTTCCGCTCCATCTCGGCGGGTCTAGAATGTGACCTTGAAGTTGGTCAAATGAGATCCTTTGCGTCCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0016310 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044237 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

174

Amino Acids

20.05

Weight (kDa)

6.59

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	47 - 126	1.7e-07	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80100 AT1G80100 AT1G80100
fragaria_vesca	FvH4_6g29740
malus_domestica	MD17G1211900.v1.1
prunus_persica	Prupe.3G087100_v2.0.a1 Prupe.3G087100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0135431
rosa_laevigata	RLG00000019464
rosa_roxburghii	Rroxscaffold_2G00109250 Rroxscaffold_2G00116740
rosa_rugosa	Rorug02G0324700
rosa_samantha	Rh2AG370100 Rh2BG382000 Rh2CG360700 Rh2DG398300
rosa_wichuraiana	Rw2G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	459
AciI	CCGC	3 cut(s)	318, 457, 470
AclWI	GGATC	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	159
AfeI	AGCGCT	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	110, 247, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AleI	CACNNNNGTG	1 cut(s)	336
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	6 cut(s)	106, 120, 175, 267, 356, 364
AluI	AGCT	6 cut(s)	106, 120, 175, 267, 356, 364
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	501
AlwNI	CAGNNNCTG	1 cut(s)	421
Aor51HI	AGCGCT	1 cut(s)	195
ApeKI	GCWGC	6 cut(s)	100, 103, 264, 364, 421, 445
Asp700I	GAANNNNTTC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	122
BauI	CACGAG	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	6 cut(s)	112, 115, 276, 351, 408, 457
BccI	CCATC	2 cut(s)	196, 470
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	197
BfrI	CTTAAG	1 cut(s)	178
BisI	GCNGC	7 cut(s)	101, 104, 265, 318, 365, 422, 446
BlsI	GCNGC	7 cut(s)	102, 105, 266, 319, 366, 423, 447
BmiI	GGNNCC	1 cut(s)	280
BpuEI	CTTGAG	3 cut(s)	253, 370, 374
BsaBI	GATNNNNATC	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	39
BseGI	GGATG	1 cut(s)	85
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	202, 304
BseXI	GCAGC	6 cut(s)	112, 115, 276, 351, 408, 457
BseYI	CCCAGC	1 cut(s)	341
BsgI	GTGCAG	2 cut(s)	386, 407
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	19, 506
BspACI	CCGC	3 cut(s)	318, 457, 470
BspCNI	CTCAG	2 cut(s)	201, 303
BspLI	GGNNCC	1 cut(s)	280
BspMAI	CTGCAG	1 cut(s)	102
BspPI	GGATC	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	459
BsrDI	GCAATG	1 cut(s)	60
BssMI	GATC	2 cut(s)	19, 506
BssSI	CACGAG	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	404
Bst4CI	ACNGT	1 cut(s)	338
BstAFI	CTTAAG	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	30, 51
BstDEI	CTNAG	2 cut(s)	188, 290
BstF5I	GGATG	1 cut(s)	85
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	2 cut(s)	22, 509
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	2 cut(s)	19, 506
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 91, 100, 270, 314
BstSFI	CTRYAG	1 cut(s)	98
BstV1I	GCAGC	6 cut(s)	112, 115, 276, 351, 408, 457
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	2 cut(s)	30, 51
CaiI	CAGNNNCTG	1 cut(s)	421
CfoI	GCGC	1 cut(s)	196
CseI	GACGC	2 cut(s)	427, 504
CviAII	CATG	2 cut(s)	374, 442
CviJI	RGCY	8 cut(s)	32, 106, 120, 175, 267, 317, 356, 364
CviKI_1	RGCY	8 cut(s)	32, 106, 120, 175, 267, 317, 356, 364
DdeI	CTNAG	2 cut(s)	188, 290
DpnI	GATC	2 cut(s)	21, 508
DpnII	GATC	2 cut(s)	19, 506
Ecl136II	GAGCTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	122
Eco47III	AGCGCT	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	2 cut(s)	377, 445
FaiI	YATR	3 cut(s)	38, 375, 443
FatI	CATG	2 cut(s)	373, 441
FauI	CCCGC	1 cut(s)	463
Fnu4HI	GCNGC	7 cut(s)	101, 104, 265, 318, 365, 422, 446
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	7 cut(s)	101, 104, 265, 318, 365, 422, 446
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	7 cut(s)	101, 104, 265, 318, 365, 422, 446
GsaI	CCCAGC	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	197
HgaI	GACGC	2 cut(s)	427, 504
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	377, 445
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	5 cut(s)	40, 164, 237, 247, 288
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	9 cut(s)	139, 169, 191, 201, 220, 260, 293, 325, 520
Hpy188III	TCNNGA	4 cut(s)	110, 391, 415, 476
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	5 cut(s)	94, 100, 403, 424, 445
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 91, 100, 270, 314
HpyF3I	CTNAG	2 cut(s)	188, 290
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	377, 445
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	19, 506
LmnI	GCTCC	2 cut(s)	125, 464
LpnPI	CCDG	4 cut(s)	53, 327, 353, 428
Lsp1109I	GCAGC	6 cut(s)	112, 115, 276, 351, 408, 457
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	2 cut(s)	21, 508
MbiI	CCGCTC	1 cut(s)	459
MboI	GATC	2 cut(s)	19, 506
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	2 cut(s)	173, 282
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	2 cut(s)	398, 425
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	336
MspCI	CTTAAG	1 cut(s)	178
MwoI	GCNNNNNNNGC	5 cut(s)	55, 91, 100, 270, 314
NdeII	GATC	2 cut(s)	19, 506
NlaIII	CATG	2 cut(s)	377, 445
NlaIV	GGNNCC	1 cut(s)	280
NmeAIII	GCCGAG	1 cut(s)	446
NmuCI	GTSAC	1 cut(s)	482
OliI	CACNNNNGTG	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	3 cut(s)	40, 237, 247
PkrI	GCNGC	7 cut(s)	102, 105, 266, 319, 366, 423, 447
PleI	GAGTC	2 cut(s)	172, 282
PpsI	GAGTC	2 cut(s)	172, 282
Psp124BI	GAGCTC	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	7 cut(s)	101, 104, 265, 318, 365, 422, 446
Sau3AI	GATC	2 cut(s)	19, 506
SchI	GAGTC	2 cut(s)	173, 282
SduI	GDGCHC	1 cut(s)	122
SfcI	CTRYAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	4 cut(s)	178, 268, 349, 389
SmoI	CTYRAG	4 cut(s)	178, 268, 349, 389
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	3 cut(s)	318, 457, 470
SspMI	CTAG	1 cut(s)	476
SstI	GAGCTC	1 cut(s)	122
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	313
TasI	AATT	1 cut(s)	86
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	3 cut(s)	40, 237, 247
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	6 cut(s)	100, 103, 264, 364, 421, 445
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	53, 53, 244
Vha464I	CTTAAG	1 cut(s)	178
XbaI	TCTAGA	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.