Rroxscaffold_2G00116740

histidine-containing phosphotransfer protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
43988582 .. 43989804
1223 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00116740.1

Sequence Viewer

Length: 276 bp
ATGGATAGGGAGTTCTCGGACTACAAGAAAATGGGAATCCATTTGAATCAGTTCATCGGAAGCAGCTCAAGCATTGGTGCCAAGAGACTCAGAAACGTCTGCGTTGCTTTTCGAGCCGCTTCTGAACAACACAACCGTGCTGGGTGCTTGAGAGCTTTAGAGCTGCTGGAACATGACTATTGCTACCTCAAGAATAAACTGCACGAGTTATTCCAGATAGAGCAGCAACGAGTGTTGGCAGCTGGGGTTCGTTACCCAATACAGCAGATCAATTAA

Protein Analysis

91

Amino Acids

10.54

Weight (kDa)

9.18

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014510)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AciI CCGC 1 cut(s) 117
AgsI TTSAA 1 cut(s) 46
AleI CACNNNNGTG 1 cut(s) 135
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 4 cut(s) 66, 155, 163, 242
AluI AGCT 4 cut(s) 66, 155, 163, 242
Alw26I GTCTC 1 cut(s) 79
ApeKI GCWGC 4 cut(s) 63, 163, 223, 239
Asp700I GAANNNNTTC 1 cut(s) 50
BanI GGYRCC 1 cut(s) 77
BauI CACGAG 1 cut(s) 203
BbvI GCAGC 4 cut(s) 75, 150, 235, 251
BcoDI GTCTC 1 cut(s) 79
BisI GCNGC 5 cut(s) 64, 117, 164, 224, 240
BlsI GCNGC 5 cut(s) 65, 118, 165, 225, 241
BmiI GGNNCC 1 cut(s) 79
BpuEI CTTGAG 3 cut(s) 52, 169, 173
BseMII CTCAG 1 cut(s) 103
BseXI GCAGC 4 cut(s) 75, 150, 235, 251
BseYI CCCAGC 2 cut(s) 140, 242
BsgI GTGCAG 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 77
BssMI GATC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 203
Bst2BI CACGAG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 89
BstKTI GATC 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 2 cut(s) 69, 113
BstV1I GCAGC 4 cut(s) 75, 150, 235, 251
CviAII CATG 1 cut(s) 173
CviJI RGCY 5 cut(s) 66, 116, 155, 163, 242
CviKI_1 RGCY 5 cut(s) 66, 116, 155, 163, 242
DdeI CTNAG 1 cut(s) 89
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
FaeI CATG 1 cut(s) 176
FaiI YATR 1 cut(s) 174
FatI CATG 1 cut(s) 172
Fnu4HI GCNGC 5 cut(s) 64, 117, 164, 224, 240
Fsp4HI GCNGC 5 cut(s) 64, 117, 164, 224, 240
GluI GCNGC 5 cut(s) 64, 117, 164, 224, 240
GsaI CCCAGC 2 cut(s) 144, 246
Hin1II CATG 1 cut(s) 176
HinfI GANTC 3 cut(s) 36, 46, 87
Hpy188I TCNGA 4 cut(s) 19, 59, 92, 124
Hpy188III TCNNGA 2 cut(s) 190, 214
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 113
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 176
Kzo9I GATC 1 cut(s) 267
LpnPI CCDG 4 cut(s) 126, 152, 227, 228
Lsp1109I GCAGC 4 cut(s) 75, 150, 235, 251
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 251
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MluCI AATT 1 cut(s) 271
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 1 cut(s) 274
MslI CAYNNNNRTG 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 242
MwoI GCNNNNNNNGC 2 cut(s) 69, 113
NdeII GATC 1 cut(s) 267
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 79
OliI CACNNNNGTG 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 36, 46
PkrI GCNGC 5 cut(s) 65, 118, 165, 225, 241
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PspFI CCCAGC 2 cut(s) 140, 242
PspN4I GGNNCC 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 274
SatI GCNGC 5 cut(s) 64, 117, 164, 224, 240
Sau3AI GATC 1 cut(s) 267
SchI GAGTC 1 cut(s) 81
SetI ASST 6 cut(s) 68, 99, 157, 165, 189, 244
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 3 cut(s) 67, 148, 188
SmoI CTYRAG 3 cut(s) 67, 148, 188
Sse9I AATT 1 cut(s) 271
SsiI CCGC 1 cut(s) 117
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 112
TasI AATT 1 cut(s) 271
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 2 cut(s) 36, 46
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TseI GCWGC 4 cut(s) 63, 163, 223, 239
TspDTI ATGAA 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.