Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014510

Physical Location & Seq

Genomic Coordinates Forward (+)

22979360 .. 22981579

Gene Structure 2220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29740.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTGGGGTTGGGTGTTGATCGGTTGCGAGCCGATATGAATCGGTTGCTCGCAATGCTCTTTCACCAGGGAGTATTGGATGAGCAATTCTTGCAACTGCAGCAGCTTCAAGACGAGAGCTCCCCAAACTTTGTTTCTGAAGTTGTAAACATCTACTTCCAAGAGTCGGAGAAGCTGTTGAGAAATCTCAGAGCACTACTGATGGATAGGGAGTTCTCGGACTACAAGAAAATGGGGATCCATTTGAATCAGTTGATCGGAAGCAGCTCAAGCATTGGTGCCAAGAGACTCAGAAACGTCTGCGTTGCTTTTCGAACCGCTTCTGAACAACACAACCGTGCTGGGTGCTTGAGAGCTTTAGAGCTGCTGGAACATGACTATTGCTACCTCAAGAACAAGCTGCATGAATTGTTCCAGATAGAGCAGCAACGAGTATTGGCAGCTGGGGTTCGATACCCAATACAGCAGATCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0016310 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044237 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

159

Amino Acids

18.32

Weight (kDa)

7.77

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	47 - 109	2.5e-07	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80100 AT1G80100 AT1G80100
fragaria_vesca	FvH4_6g29740
malus_domestica	MD17G1211900.v1.1
prunus_persica	Prupe.3G087100_v2.0.a1 Prupe.3G087100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0135431
rosa_laevigata	RLG00000019464
rosa_roxburghii	Rroxscaffold_2G00109250 Rroxscaffold_2G00116740
rosa_rugosa	Rorug02G0324700
rosa_samantha	Rh2AG370100 Rh2BG382000 Rh2CG360700 Rh2DG398300
rosa_wichuraiana	Rw2G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	2 cut(s)	232, 245
AcuI	CTGAAG	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	110, 247
AjnI	CCWGG	1 cut(s)	66
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AleI	CACNNNNGTG	1 cut(s)	336
AloI	GAACNNNNNNTCC	2 cut(s)	197, 229
AluBI	AGCT	8 cut(s)	106, 120, 175, 267, 356, 364, 400, 443
AluI	AGCT	8 cut(s)	106, 120, 175, 267, 356, 364, 400, 443
Alw21I	GWGCWC	2 cut(s)	122, 196
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	2 cut(s)	232, 245
ApeKI	GCWGC	7 cut(s)	100, 103, 264, 364, 400, 424, 440
Asp700I	GAANNNNTTC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	56
AsuII	TTCGAA	1 cut(s)	313
BamHI	GGATCC	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	122
Bbv12I	GWGCWC	2 cut(s)	122, 196
BbvI	GCAGC	7 cut(s)	112, 115, 276, 351, 387, 436, 452
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	280
BfmI	CTRYAG	1 cut(s)	98
BisI	GCNGC	7 cut(s)	101, 104, 265, 365, 401, 425, 441
BlsI	GCNGC	7 cut(s)	102, 105, 266, 366, 402, 426, 442
Bme1390I	CCNGG	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	239, 280
BmrFI	CCNGG	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	313
BpuEI	CTTGAG	3 cut(s)	253, 370, 374
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	85
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	202, 304
BseXI	GCAGC	7 cut(s)	112, 115, 276, 351, 387, 436, 452
BseYI	CCCAGC	2 cut(s)	341, 443
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	122, 196
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	280
Bsp119I	TTCGAA	1 cut(s)	313
Bsp1286I	GDGCHC	2 cut(s)	122, 196
Bsp143I	GATC	4 cut(s)	19, 237, 255, 468
BspACI	CCGC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	201, 303
BspLI	GGNNCC	2 cut(s)	239, 280
BspMAI	CTGCAG	1 cut(s)	102
BspPI	GGATC	2 cut(s)	232, 245
BspT104I	TTCGAA	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	4 cut(s)	19, 237, 255, 468
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	91
BstBI	TTCGAA	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	30, 51
BstDEI	CTNAG	2 cut(s)	188, 290
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	4 cut(s)	22, 240, 258, 471
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	4 cut(s)	19, 237, 255, 468
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 91, 100, 270
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	98
BstV1I	GCAGC	7 cut(s)	112, 115, 276, 351, 387, 436, 452
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	2 cut(s)	30, 51
CviAII	CATG	2 cut(s)	374, 404
CviJI	RGCY	9 cut(s)	32, 106, 120, 175, 267, 356, 364, 400, 443
CviKI_1	RGCY	9 cut(s)	32, 106, 120, 175, 267, 356, 364, 400, 443
DdeI	CTNAG	2 cut(s)	188, 290
DpnI	GATC	4 cut(s)	21, 239, 257, 470
DpnII	GATC	4 cut(s)	19, 237, 255, 468
Ecl136II	GAGCTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	2 cut(s)	377, 407
FaiI	YATR	3 cut(s)	38, 375, 405
FatI	CATG	2 cut(s)	373, 403
Fnu4HI	GCNGC	7 cut(s)	101, 104, 265, 365, 401, 425, 441
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	7 cut(s)	101, 104, 265, 365, 401, 425, 441
GluI	GCNGC	7 cut(s)	101, 104, 265, 365, 401, 425, 441
GsaI	CCCAGC	2 cut(s)	345, 447
Hin1II	CATG	2 cut(s)	377, 407
HinfI	GANTC	4 cut(s)	40, 164, 247, 288
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	7 cut(s)	139, 169, 191, 220, 260, 293, 325
Hpy188III	TCNNGA	3 cut(s)	110, 391, 415
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	94, 100, 403
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 91, 100, 270
HpyF3I	CTNAG	2 cut(s)	188, 290
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	377, 407
Kzo9I	GATC	4 cut(s)	19, 237, 255, 468
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	6 cut(s)	53, 80, 327, 353, 428, 429
Lsp1109I	GCAGC	7 cut(s)	112, 115, 276, 351, 387, 436, 452
MaeII	ACGT	1 cut(s)	297
MalI	GATC	4 cut(s)	21, 239, 257, 470
MboI	GATC	4 cut(s)	19, 237, 255, 468
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	122, 196
MluCI	AATT	3 cut(s)	86, 407, 472
MlyI	GAGTC	2 cut(s)	173, 282
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	1 cut(s)	398
MroXI	GAANNNNTTC	1 cut(s)	319
MseI	TTAA	1 cut(s)	475
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	4 cut(s)	55, 91, 100, 270
NdeII	GATC	4 cut(s)	19, 237, 255, 468
NlaIII	CATG	2 cut(s)	377, 407
NlaIV	GGNNCC	2 cut(s)	239, 280
NspV	TTCGAA	1 cut(s)	313
OliI	CACNNNNGTG	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	40, 247
PkrI	GCNGC	7 cut(s)	102, 105, 266, 366, 402, 426, 442
PleI	GAGTC	2 cut(s)	172, 282
PpsI	GAGTC	2 cut(s)	172, 282
Psp124BI	GAGCTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	66
PspFI	CCCAGC	2 cut(s)	341, 443
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	239, 280
PstI	CTGCAG	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	475
SatI	GCNGC	7 cut(s)	101, 104, 265, 365, 401, 425, 441
Sau3AI	GATC	4 cut(s)	19, 237, 255, 468
SchI	GAGTC	2 cut(s)	173, 282
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	2 cut(s)	122, 196
SfcI	CTRYAG	1 cut(s)	98
SfuI	TTCGAA	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	3 cut(s)	268, 349, 389
SmoI	CTYRAG	3 cut(s)	268, 349, 389
Sse9I	AATT	3 cut(s)	86, 407, 472
SsiI	CCGC	1 cut(s)	318
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	2 cut(s)	313, 451
TasI	AATT	3 cut(s)	86, 407, 472
TfiI	GAWTC	2 cut(s)	40, 247
Tru1I	TTAA	1 cut(s)	475
Tru9I	TTAA	1 cut(s)	475
TseI	GCWGC	7 cut(s)	100, 103, 264, 364, 400, 424, 440
TspDTI	ATGAA	2 cut(s)	53, 420
XmnI	GAANNNNTTC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.