AT1G80290

glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011884
Physical Location & Seq
Forward (+)
30187920 .. 30189823
1904 bp
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UTR
Exon/CDS
Intron
AT1G80290.1

Sequence Viewer

Length: 990 bp
ATGGGAGTCAAATCGGTGAGGTTCTCTATCTGGTTCCTTTTCGTTGTTACGGATCTCGTGTTTTGTCGCACGCTCTCAGGGGATCCAGATCCATGTGATGCAACGAACCAGAGAGAATTTCAAAAACTCAGATCGGATCAGATCACCGTTCTAATCAATGGTTACTCAGAATACCGGATTCCTCTTCTGCAAACCATCGTGGCCTCTTATTCTTCATCCTCGATCGTATCCTCCATCTTAGTCCTATGGGGTAACCCTAGCACACCTGATCAACTACTTGACCAGTTGTATCAGAATCTGACTCAGTATTCGCCTGGTTCTGCTTCCATCTCTCTAATTCAGCAATCTTCGAGCAGCCTCAACGCTAGATTCCTCCCTCGTTCCTCTGTAGACACTCGTGCTGTTTTGATATGTGATGATGACGTCGAGATTGACCAGAGATCGTTGGAGTTTGCGTTTTCAGTGTGGAAGTCGAATCCTGATCGCCTTGTAGGAACGTTTGTGAGGTCACACGGTTTCGATTTGCAGGGGAAAGAGTGGATATACACTGTTCATCCAGATAAATACTCGATTGTGTTGACCAAGTTCATGATGATGAAACAGGATTATCTGTTTGAGTATAGCTGCAAGGGAGGTGTGGAGATGGAGGAGATGAGGATGATTGTGGACCAAATGCGTAACTGCGAGGATATACTGATGAATTTTGTAGCTGCAGATAGGTTAAGGGCAGGGCCAATCATGGTTGGAGCTGAGAGAGTTAGGGATTGGGGAGATGCGCGTAACGAAGAAGTAGAAGAGAGAGTAAGAGACGTGGGATTGAGCAGTAGAAGAGTGGAACATAGGAAGAGAAGAGGGAATTGCATTAGGGAGTTTCATAGAGTTATGGGGAAGATGCCATTGATGTATAGTTATGGTAAAGTTGTCAACTCTGTTGGGGAACAAGGATTGTGTCGTAAAGCCGGCAAACTTGTCTTTTGTGATCGAGATTGA

Protein Analysis

329

Amino Acids

37.7

Weight (kDa)

6.9

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_64 PF09258 48 - 310 1.7e-80 Glycosyl transferase family 64 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011884)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80290 AT1G80290
fragaria_vesca FvH4_2g36410 FvH4_2g36410
malus_domestica MD08G1123400.v1.1 MD15G1102400.v1.1
prunus_persica Prupe.1G455400_v2.0.a1
pyrus_communis pycom08g10260
rosa_chinensis RchiOBHm_Chr6g0305491
rosa_laevigata RLG00000010887
rosa_multiflora Rmu_co8349055.1_g000001
rosa_roxburghii Rroxscaffold_7G00162760
rosa_rugosa Rorug06G0340500 Rorug06G0340600.1
rosa_samantha Rh6AG452700 Rh6BG449100 Rh6CG466400 Rh6DG453100
rosa_wichuraiana Rw6G039450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 426
AccI GTMKAC 1 cut(s) 390
AccII CGCG 1 cut(s) 778
AclI AACGTT 1 cut(s) 497
AclWI GGATC 5 cut(s) 60, 77, 83, 90, 144
AcsI RAATTY 2 cut(s) 116, 700
AcyI GRCGYC 1 cut(s) 423
AgsI TTSAA 1 cut(s) 122
AjiI CACGTC 1 cut(s) 811
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 3 cut(s) 624, 710, 749
AluI AGCT 3 cut(s) 624, 710, 749
Alw26I GTCTC 1 cut(s) 801
AlwI GGATC 5 cut(s) 60, 77, 83, 90, 144
AlwNI CAGNNNCTG 1 cut(s) 298
AoxI GGCC 2 cut(s) 201, 731
ApeKI GCWGC 3 cut(s) 354, 624, 710
ApoI RAATTY 2 cut(s) 116, 700
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
AspLEI GCGC 1 cut(s) 778
AspS9I GGNCC 2 cut(s) 667, 731
AsuHPI GGTGA 2 cut(s) 28, 136
AvaII GGWCC 1 cut(s) 667
BamHI GGATCC 1 cut(s) 82
BauI CACGAG 2 cut(s) 56, 396
BbvI GCAGC 3 cut(s) 366, 611, 697
BccI CCATC 4 cut(s) 203, 242, 335, 637
BciT130I CCWGG 1 cut(s) 315
BciVI GTATCC 1 cut(s) 238
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 801
BfaI CTAG 2 cut(s) 258, 366
BfmI CTRYAG 2 cut(s) 387, 711
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 3 cut(s) 355, 625, 711
BlsI GCNGC 3 cut(s) 356, 626, 712
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 1 cut(s) 667
BmgBI CACGTC 1 cut(s) 811
BmgT120I GGNCC 2 cut(s) 667, 731
BmiI GGNNCC 2 cut(s) 35, 84
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 3 cut(s) 88, 763, 882
BsaBI GATNNNNATC 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bse118I RCCGGY 1 cut(s) 959
Bse1I ACTGG 1 cut(s) 283
Bse8I GATNNNNATC 1 cut(s) 87
BseBI CCWGG 1 cut(s) 315
BseGI GGATG 3 cut(s) 215, 553, 663
BseJI GATNNNNATC 1 cut(s) 87
BseMII CTCAG 5 cut(s) 90, 142, 180, 317, 741
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 662
BseXI GCAGC 3 cut(s) 366, 611, 697
Bsh1236I CGCG 1 cut(s) 778
Bsh1285I CGRYCG 1 cut(s) 225
BshFI GGCC 2 cut(s) 203, 733
BsiEI CGRYCG 1 cut(s) 225
BsiSI CCGG 2 cut(s) 175, 960
BsmAI GTCTC 1 cut(s) 801
BsmBI CGTCTC 1 cut(s) 801
BsnI GGCC 2 cut(s) 203, 733
BspANI GGCC 2 cut(s) 203, 733
BspCNI CTCAG 5 cut(s) 89, 141, 179, 316, 742
BspFNI CGCG 1 cut(s) 778
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 2 cut(s) 35, 84
BspMAI CTGCAG 1 cut(s) 715
BspPI GGATC 5 cut(s) 60, 77, 83, 90, 144
BsrFI RCCGGY 1 cut(s) 959
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 959
BssNI GRCGYC 1 cut(s) 423
BssSI CACGAG 2 cut(s) 56, 396
Bst2BI CACGAG 2 cut(s) 56, 396
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 3 cut(s) 148, 515, 550
Bst6I CTCTTC 5 cut(s) 189, 789, 823, 839, 844
BstACI GRCGYC 1 cut(s) 423
BstC8I GCNNGC 2 cut(s) 71, 961
BstDEI CTNAG 6 cut(s) 76, 128, 166, 238, 303, 750
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 3 cut(s) 215, 553, 663
BstFNI CGCG 1 cut(s) 778
BstHHI GCGC 1 cut(s) 778
BstMAI GTCTC 1 cut(s) 801
BstMCI CGRYCG 1 cut(s) 225
BstNI CCWGG 1 cut(s) 315
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 2 cut(s) 387, 711
BstUI CGCG 1 cut(s) 778
BstV1I GCAGC 3 cut(s) 366, 611, 697
BstX2I RGATCY 3 cut(s) 52, 82, 88
BstYI RGATCY 3 cut(s) 52, 82, 88
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 2 cut(s) 203, 733
BtrI CACGTC 1 cut(s) 811
BtsCI GGATG 3 cut(s) 215, 553, 663
BtsIMutI CAGTG 2 cut(s) 468, 546
Cac8I GCNNGC 2 cut(s) 71, 961
CaiI CAGNNNCTG 1 cut(s) 298
CciI TCATGA 1 cut(s) 588
CfoI GCGC 1 cut(s) 778
Cfr10I RCCGGY 1 cut(s) 959
Cfr13I GGNCC 2 cut(s) 667, 731
CviAII CATG 3 cut(s) 93, 589, 739
CviJI RGCY 7 cut(s) 203, 357, 624, 710, 733, 749, 959
CviKI_1 RGCY 7 cut(s) 203, 357, 624, 710, 733, 749, 959
DdeI CTNAG 6 cut(s) 76, 128, 166, 238, 303, 750
Eam1104I CTCTTC 5 cut(s) 189, 789, 823, 839, 844
EarI CTCTTC 5 cut(s) 189, 789, 823, 839, 844
Eco47I GGWCC 1 cut(s) 667
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 313
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 3 cut(s) 96, 592, 742
FatI CATG 3 cut(s) 92, 588, 738
FbaI TGATCA 1 cut(s) 268
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 3 cut(s) 355, 625, 711
FokI GGATG 3 cut(s) 202, 540, 670
Fsp4HI GCNGC 3 cut(s) 355, 625, 711
FspBI CTAG 2 cut(s) 258, 366
GlaI GCGC 1 cut(s) 777
GluI GCNGC 3 cut(s) 355, 625, 711
HaeIII GGCC 2 cut(s) 203, 733
HapII CCGG 2 cut(s) 175, 960
HhaI GCGC 1 cut(s) 778
Hin1I GRCGYC 1 cut(s) 423
Hin1II CATG 3 cut(s) 96, 592, 742
Hin6I GCGC 1 cut(s) 776
HinP1I GCGC 1 cut(s) 776
HincII GTYRAC 2 cut(s) 579, 925
HindII GTYRAC 2 cut(s) 579, 925
HinfI GANTC 6 cut(s) 6, 178, 295, 301, 369, 475
HpaII CCGG 2 cut(s) 175, 960
HphI GGTGA 2 cut(s) 28, 136
Hpy166II GTNNAC 4 cut(s) 391, 579, 667, 925
Hpy188I TCNGA 6 cut(s) 131, 136, 141, 169, 294, 300
Hpy188III TCNNGA 6 cut(s) 86, 427, 479, 557, 589, 983
Hpy8I GTNNAC 4 cut(s) 391, 579, 667, 925
Hpy99I CGWCG 1 cut(s) 428
HpyCH4III ACNGT 3 cut(s) 148, 515, 550
HpyCH4IV ACGT 3 cut(s) 423, 497, 810
HpyCH4V TGCA 6 cut(s) 101, 190, 526, 627, 713, 861
HpyF3I CTNAG 6 cut(s) 76, 128, 166, 238, 303, 750
HpySE526I ACGT 3 cut(s) 423, 497, 810
Hsp92I GRCGYC 1 cut(s) 423
Hsp92II CATG 3 cut(s) 96, 592, 742
HspAI GCGC 1 cut(s) 776
KroI GCCGGC 1 cut(s) 959
KroNI GCCGGC 1 cut(s) 961
Ksp22I TGATCA 1 cut(s) 268
LmnI GCTCC 1 cut(s) 746
Lsp1109I GCAGC 3 cut(s) 366, 611, 697
LweI GCATC 3 cut(s) 88, 763, 882
MaeI CTAG 2 cut(s) 258, 366
MaeII ACGT 3 cut(s) 423, 497, 810
MaeIII GTNAC 6 cut(s) 46, 161, 251, 507, 677, 779
MboII GAAGA 9 cut(s) 176, 204, 339, 797, 806, 840, 856, 861, 901
MflI RGATCY 3 cut(s) 52, 82, 88
MluCI AATT 4 cut(s) 116, 336, 700, 856
MlyI GAGTC 2 cut(s) 15, 295
MmeI TCCRAC 2 cut(s) 426, 724
MroNI GCCGGC 1 cut(s) 959
MseI TTAA 1 cut(s) 722
MslI CAYNNNNRTG 1 cut(s) 593
MspI CCGG 2 cut(s) 175, 960
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 778
NaeI GCCGGC 1 cut(s) 961
NgoMIV GCCGGC 1 cut(s) 959
NlaIII CATG 3 cut(s) 96, 592, 742
NlaIV GGNNCC 2 cut(s) 35, 84
NmuCI GTSAC 1 cut(s) 507
PagI TCATGA 1 cut(s) 588
PdiI GCCGGC 1 cut(s) 961
PfeI GAWTC 4 cut(s) 178, 295, 369, 475
PkrI GCNGC 3 cut(s) 356, 626, 712
Ple19I CGATCG 1 cut(s) 225
PleI GAGTC 2 cut(s) 14, 295
PpsI GAGTC 2 cut(s) 14, 295
Psp1406I AACGTT 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 313
PspEI GGTNACC 1 cut(s) 251
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 35, 84
PspPI GGNCC 2 cut(s) 667, 731
PstI CTGCAG 1 cut(s) 715
PstNI CAGNNNCTG 1 cut(s) 298
PsuI RGATCY 3 cut(s) 52, 82, 88
PvuI CGATCG 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 593
SaqAI TTAA 1 cut(s) 722
SatI GCNGC 3 cut(s) 355, 625, 711
Sau96I GGNCC 2 cut(s) 667, 731
SchI GAGTC 2 cut(s) 15, 295
ScrFI CCNGG 1 cut(s) 315
SfaNI GCATC 3 cut(s) 88, 763, 882
SfcI CTRYAG 2 cut(s) 387, 711
SinI GGWCC 1 cut(s) 667
SmiMI CAYNNNNRTG 1 cut(s) 593
Sse9I AATT 4 cut(s) 116, 336, 700, 856
SspMI CTAG 2 cut(s) 258, 366
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 3 cut(s) 148, 515, 550
TaiI ACGT 3 cut(s) 426, 500, 813
TaqI TCGA 7 cut(s) 221, 350, 426, 473, 519, 569, 982
TasI AATT 4 cut(s) 116, 336, 700, 856
TfiI GAWTC 4 cut(s) 178, 295, 369, 475
Tru1I TTAA 1 cut(s) 722
Tru9I TTAA 1 cut(s) 722
TscAI CASTG 2 cut(s) 468, 553
TseFI GTSAC 1 cut(s) 507
TseI GCWGC 3 cut(s) 354, 624, 710
Tsp45I GTSAC 1 cut(s) 507
TspDTI ATGAA 6 cut(s) 204, 542, 577, 611, 713, 863
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 2 cut(s) 468, 553
VpaK11BI GGWCC 1 cut(s) 667
XapI RAATTY 2 cut(s) 116, 700
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 2 cut(s) 258, 366
ZraI GACGTC 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.