Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011884

Physical Location & Seq

Genomic Coordinates Reverse (-)

11411868 .. 11414097

Gene Structure 2230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1123400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGTTGGAAAAACAAGGAGGCACTAGAGATGATGAATTCATGTCCAACTATCTTTGTAATTCTCATGTATTTAGTCATCTTGAGCTCTGGGGGTGTTCATGTGCTATCTGTTCGTACACTTTCGACTGATCCTTGCAACCCCAAAGCCCAACAGGACCCGCAAAATCTCATTTCTGACCAGCTAACCGTACTCATCAATGGCTACTCCGAGTCTCGCATCCCTCTCCTTCAATCCATCGTCTCCACGTATGCGGCCTCGTCTTTGGTTTCATACATTCTTGTGCTTTGGGGAAACCCTTCCACCCCATCCCAGACCTTGTCCCAACTGGCTCGCAATCTCACAGACTCCTCCTTTGGATTCGGTGGCATCTCTGTAATCCGCCAAGCATCTGACAGCCTCAATAATCGGTTCCTCCCCAGGCCCGAAATTAAGACCCGAGCAGTCTTGGTCTGTGATGATGATGTTGAAGTTGACCCGAAATCCTTCGAATTTGCATTTAAAATGTGGGGATCAAACCCGGATCGGCTGGTTGGGTTCTTTGTCAGGTCACATGACATAGATTTGTCAAGGAAAGAGTGGATCTACACTGTTCATCCAGACAAGTACTCTATCATGCTCACCAAGTTTATGCTTTTGAAAAGCGAGTATTTGTTTCGGTACAGCTGTGCAGGAGGACCGGTGATGGCCAGCATGAGGAAGATCGTGGATAGGATGCAAAACTGCGAGGACATATTGATGAATTTTGTGGCAGCGGATGAGGTTAATGCAGGGCCTATATTGGTCGGAGCTGAAAGGGTTAGGGATTGGGGGGATGCGCGCAATGATCATGATGATGGTGATGCACGACGAGGATTGATTGGGGAGGTTGCACAGGTGGGATTGAGTAGTAGGAAAACAAAGCATAGGAAGAGGAGAGGGGAGTGTATAGAAGGGCTGTGTCAAAAAGGAGGGAAATTGGTGTTTTGTGATCAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006029 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015012 GO:0016020 GO:0016740 GO:0016757 GO:0019538 GO:0030166 GO:0030201 GO:0030307 GO:0034645 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0065007 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

327

Amino Acids

36.46

Weight (kDa)

7.56

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	62 - 315	5.4e-67	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80290 AT1G80290
fragaria_vesca	FvH4_2g36410 FvH4_2g36410
malus_domestica	MD08G1123400.v1.1 MD15G1102400.v1.1
prunus_persica	Prupe.1G455400_v2.0.a1
pyrus_communis	pycom08g10260
rosa_chinensis	RchiOBHm_Chr6g0305491
rosa_laevigata	RLG00000010887
rosa_multiflora	Rmu_co8349055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162760
rosa_rugosa	Rorug06G0340500 Rorug06G0340600.1
rosa_samantha	Rh6AG452700 Rh6BG449100 Rh6CG466400 Rh6DG453100
rosa_wichuraiana	Rw6G039450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	820
AciI	CCGC	4 cut(s)	161, 254, 382, 755
AclWI	GGATC	4 cut(s)	125, 520, 531, 590
AcoI	YGGCCR	1 cut(s)	687
AcsI	RAATTY	3 cut(s)	37, 491, 742
AfaI	GTAC	4 cut(s)	118, 192, 608, 662
AfiI	CCNNNNNNNGG	1 cut(s)	696
AgeI	ACCGGT	1 cut(s)	679
AgsI	TTSAA	3 cut(s)	233, 470, 640
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	4 cut(s)	87, 184, 666, 791
AluI	AGCT	4 cut(s)	87, 184, 666, 791
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	2 cut(s)	219, 247
AlwI	GGATC	4 cut(s)	125, 520, 531, 590
Ama87I	CYCGRG	1 cut(s)	438
AoxI	GGCC	4 cut(s)	255, 422, 687, 773
ApeKI	GCWGC	1 cut(s)	752
ApoI	RAATTY	3 cut(s)	37, 491, 742
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AsiGI	ACCGGT	1 cut(s)	679
Asp700I	GAANNNNTTC	2 cut(s)	298, 485
AspLEI	GCGC	2 cut(s)	820, 822
AspS9I	GGNCC	4 cut(s)	157, 423, 677, 773
AsuC2I	CCSGG	1 cut(s)	521
AsuHPI	GGTGA	3 cut(s)	613, 694, 851
AsuII	TTCGAA	1 cut(s)	489
AvaI	CYCGRG	1 cut(s)	438
AvaII	GGWCC	2 cut(s)	157, 677
BaeI	ACNNNNGTAYC	2 cut(s)	652, 685
BalI	TGGCCA	1 cut(s)	689
BanII	GRGCYC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	764
BccI	CCATC	4 cut(s)	245, 316, 679, 830
BciT130I	CCWGG	1 cut(s)	421
BclI	TGATCA	2 cut(s)	826, 970
BcnI	CCSGG	1 cut(s)	521
BcoDI	GTCTC	2 cut(s)	219, 247
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	2 cut(s)	255, 753
BlsI	GCNGC	2 cut(s)	256, 754
BmcAI	AGTACT	1 cut(s)	608
Bme1390I	CCNGG	2 cut(s)	421, 521
Bme18I	GGWCC	2 cut(s)	157, 677
BmeT110I	CYCGRG	1 cut(s)	438
BmgT120I	GGNCC	4 cut(s)	157, 423, 677, 773
BmiI	GGNNCC	2 cut(s)	159, 413
BmrFI	CCNGG	2 cut(s)	421, 521
BmsI	GCATC	6 cut(s)	228, 378, 398, 705, 805, 832
Bpu14I	TTCGAA	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	419
BsaWI	WCCGGW	1 cut(s)	679
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	696
Bse118I	RCCGGY	1 cut(s)	679
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	829
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	6 cut(s)	219, 308, 595, 720, 763, 820
BseLI	CCNNNNNNNGG	1 cut(s)	696
BseMI	GCAATG	1 cut(s)	829
BseNI	ACTGG	1 cut(s)	333
BsePI	GCGCGC	1 cut(s)	818
BseRI	GAGGAG	2 cut(s)	340, 928
BseXI	GCAGC	1 cut(s)	764
BsgI	GTGCAG	1 cut(s)	690
Bsh1236I	CGCG	1 cut(s)	820
BshFI	GGCC	4 cut(s)	257, 424, 689, 775
BshTI	ACCGGT	1 cut(s)	679
BsiHKAI	GWGCWC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	521, 680
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	696
BsmAI	GTCTC	2 cut(s)	219, 247
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	4 cut(s)	257, 424, 689, 775
BsoBI	CYCGRG	1 cut(s)	438
Bsp119I	TTCGAA	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	7 cut(s)	130, 512, 523, 582, 702, 826, 970
BspACI	CCGC	4 cut(s)	161, 254, 382, 755
BspANI	GGCC	4 cut(s)	257, 424, 689, 775
BspFNI	CGCG	1 cut(s)	820
BspHI	TCATGA	1 cut(s)	829
BspLI	GGNNCC	2 cut(s)	159, 413
BspPI	GGATC	4 cut(s)	125, 520, 531, 590
BspT104I	TTCGAA	1 cut(s)	489
BsrDI	GCAATG	1 cut(s)	829
BsrFI	RCCGGY	1 cut(s)	679
BsrI	ACTGG	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	679
BssECI	CCNNGG	1 cut(s)	419
BssHII	GCGCGC	1 cut(s)	818
BssMI	GATC	7 cut(s)	130, 512, 523, 582, 702, 826, 970
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	2 cut(s)	190, 592
Bst6I	CTCTTC	1 cut(s)	905
BstBAI	YACGTR	1 cut(s)	249
BstBI	TTCGAA	1 cut(s)	489
BstC8I	GCNNGC	3 cut(s)	334, 691, 820
BstF5I	GGATG	6 cut(s)	219, 308, 595, 720, 763, 820
BstFNI	CGCG	1 cut(s)	820
BstHHI	GCGC	2 cut(s)	820, 822
BstKTI	GATC	7 cut(s)	133, 515, 526, 585, 705, 829, 973
BstMAI	GTCTC	2 cut(s)	219, 247
BstMBI	GATC	7 cut(s)	130, 512, 523, 582, 702, 826, 970
BstNI	CCWGG	1 cut(s)	421
BstSCI	CCNGG	2 cut(s)	419, 519
BstUI	CGCG	1 cut(s)	820
BstV1I	GCAGC	1 cut(s)	764
BstX2I	RGATCY	1 cut(s)	582
BstYI	RGATCY	1 cut(s)	582
BsuRI	GGCC	4 cut(s)	257, 424, 689, 775
BtsCI	GGATG	6 cut(s)	219, 308, 595, 720, 763, 820
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	3 cut(s)	334, 691, 820
CciI	TCATGA	1 cut(s)	829
CfoI	GCGC	2 cut(s)	820, 822
Cfr10I	RCCGGY	1 cut(s)	679
Cfr13I	GGNCC	4 cut(s)	157, 423, 677, 773
Csp6I	GTAC	4 cut(s)	117, 191, 607, 661
CspAI	ACCGGT	1 cut(s)	679
CviAII	CATG	7 cut(s)	42, 67, 101, 554, 616, 694, 830
CviQI	GTAC	4 cut(s)	117, 191, 607, 661
DpnI	GATC	7 cut(s)	132, 514, 525, 584, 704, 828, 972
DpnII	GATC	7 cut(s)	130, 512, 523, 582, 702, 826, 970
DraI	TTTAAA	1 cut(s)	502
EaeI	YGGCCR	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	905
EarI	CTCTTC	1 cut(s)	905
EciI	GGCGGA	1 cut(s)	371
Ecl136II	GAGCTC	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	157, 677
Eco53kI	GAGCTC	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	87
EcoO109I	RGGNCCY	2 cut(s)	157, 773
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	419
EcoT38I	GRGCYC	1 cut(s)	89
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	7 cut(s)	45, 70, 104, 557, 619, 697, 833
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	7 cut(s)	41, 66, 100, 553, 615, 693, 829
FauI	CCCGC	1 cut(s)	168
FbaI	TGATCA	2 cut(s)	826, 970
Fnu4HI	GCNGC	2 cut(s)	255, 753
FokI	GGATG	6 cut(s)	206, 295, 582, 727, 770, 827
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	255, 753
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	2 cut(s)	819, 821
GluI	GCNGC	2 cut(s)	255, 753
HaeIII	GGCC	4 cut(s)	257, 424, 689, 775
HapII	CCGG	2 cut(s)	521, 680
HhaI	GCGC	2 cut(s)	820, 822
Hin1II	CATG	7 cut(s)	45, 70, 104, 557, 619, 697, 833
Hin6I	GCGC	2 cut(s)	818, 820
HinP1I	GCGC	2 cut(s)	818, 820
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	3 cut(s)	212, 347, 360
HpaII	CCGG	2 cut(s)	521, 680
HphI	GGTGA	3 cut(s)	613, 694, 851
Hpy166II	GTNNAC	2 cut(s)	119, 475
Hpy188I	TCNGA	4 cut(s)	178, 211, 394, 788
Hpy188III	TCNNGA	3 cut(s)	82, 599, 830
Hpy8I	GTNNAC	2 cut(s)	119, 475
Hpy99I	CGWCG	1 cut(s)	852
HpyAV	CCTTC	4 cut(s)	239, 309, 496, 926
HpyCH4III	ACNGT	2 cut(s)	190, 592
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	7 cut(s)	138, 497, 671, 718, 770, 845, 872
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	7 cut(s)	45, 70, 104, 557, 619, 697, 833
HspAI	GCGC	2 cut(s)	818, 820
Ksp22I	TGATCA	2 cut(s)	826, 970
Kzo9I	GATC	7 cut(s)	130, 512, 523, 582, 702, 826, 970
LmnI	GCTCC	1 cut(s)	788
Lsp1109I	GCAGC	1 cut(s)	764
LweI	GCATC	6 cut(s)	228, 378, 398, 705, 805, 832
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	549
MalI	GATC	7 cut(s)	132, 514, 525, 584, 704, 828, 972
MboI	GATC	7 cut(s)	130, 512, 523, 582, 702, 826, 970
MboII	GAAGA	2 cut(s)	712, 922
MflI	RGATCY	1 cut(s)	582
MhlI	GDGCHC	1 cut(s)	89
MlsI	TGGCCA	1 cut(s)	689
MluCI	AATT	6 cut(s)	37, 60, 429, 491, 742, 956
MluNI	TGGCCA	1 cut(s)	689
MlyI	GAGTC	2 cut(s)	221, 341
MmeI	TCCRAC	2 cut(s)	71, 766
Mox20I	TGGCCA	1 cut(s)	689
MroXI	GAANNNNTTC	2 cut(s)	298, 485
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	3 cut(s)	432, 501, 765
MslI	CAYNNNNRTG	3 cut(s)	281, 737, 834
Msp20I	TGGCCA	1 cut(s)	689
MspA1I	CMGCKG	2 cut(s)	666, 755
MspI	CCGG	2 cut(s)	521, 680
MspR9I	CCNGG	2 cut(s)	421, 521
MvaI	CCWGG	1 cut(s)	421
MvnI	CGCG	1 cut(s)	820
NciI	CCSGG	1 cut(s)	521
NdeII	GATC	7 cut(s)	130, 512, 523, 582, 702, 826, 970
NlaIII	CATG	7 cut(s)	45, 70, 104, 557, 619, 697, 833
NlaIV	GGNNCC	2 cut(s)	159, 413
NmuCI	GTSAC	1 cut(s)	549
NspV	TTCGAA	1 cut(s)	489
PagI	TCATGA	1 cut(s)	829
PauI	GCGCGC	1 cut(s)	818
PdmI	GAANNNNTTC	2 cut(s)	298, 485
PfeI	GAWTC	1 cut(s)	360
PflFI	GACNNNGTC	1 cut(s)	319
PinAI	ACCGGT	1 cut(s)	679
PkrI	GCNGC	2 cut(s)	256, 754
PleI	GAGTC	2 cut(s)	220, 341
PpsI	GAGTC	2 cut(s)	220, 341
Ppu21I	YACGTR	1 cut(s)	249
PpuMI	RGGWCCY	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	159, 413
PspPI	GGNCC	4 cut(s)	157, 423, 677, 773
PspPPI	RGGWCCY	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	582
PsyI	GACNNNGTC	1 cut(s)	319
PteI	GCGCGC	1 cut(s)	818
PvuII	CAGCTG	1 cut(s)	666
RsaI	GTAC	4 cut(s)	118, 192, 608, 662
RsaNI	GTAC	4 cut(s)	117, 191, 607, 661
RseI	CAYNNNNRTG	3 cut(s)	281, 737, 834
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	432, 501, 765
SatI	GCNGC	2 cut(s)	255, 753
Sau3AI	GATC	7 cut(s)	130, 512, 523, 582, 702, 826, 970
Sau96I	GGNCC	4 cut(s)	157, 423, 677, 773
ScaI	AGTACT	1 cut(s)	608
SchI	GAGTC	2 cut(s)	221, 341
ScrFI	CCNGG	2 cut(s)	421, 521
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	6 cut(s)	228, 378, 398, 705, 805, 832
SfuI	TTCGAA	1 cut(s)	489
SinI	GGWCC	2 cut(s)	157, 677
SmiMI	CAYNNNNRTG	3 cut(s)	281, 737, 834
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	6 cut(s)	37, 60, 429, 491, 742, 956
SsiI	CCGC	4 cut(s)	161, 254, 382, 755
SspMI	CTAG	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	419, 519
TaaI	ACNGT	2 cut(s)	190, 592
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	2 cut(s)	125, 489
TasI	AATT	6 cut(s)	37, 60, 429, 491, 742, 956
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	3 cut(s)	432, 501, 765
Tru9I	TTAA	3 cut(s)	432, 501, 765
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	549
TseI	GCWGC	1 cut(s)	752
Tsp45I	GTSAC	1 cut(s)	549
TspDTI	ATGAA	6 cut(s)	30, 50, 89, 261, 584, 755
TspRI	CASTG	1 cut(s)	595
Tth111I	GACNNNGTC	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	157, 677
XapI	RAATTY	3 cut(s)	37, 491, 742
XmnI	GAANNNNTTC	2 cut(s)	298, 485
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.