Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011884

Physical Location & Seq

Genomic Coordinates Reverse (-)

5078498 .. 5079526

Gene Structure 1029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAAATCATTGCAAACGACCTTTGTGATTTTCAGCTTCTTATTCTTCTTCTACTCTCTGGATGTTCTTGTGCTTTCTTCCGGTACAATTTCCTCCGATCCTTGTGATCCTACAGCTCAGCAGGACCCAAGAACTCTCCGCTCGGACCAACTAACAGTCCTCATCAATGGCTACTCTGAGTCACGCATCCCTCTCCTCCAATCTATTGTCACCACATATGCAGCCTCCTCTTTGGTGTCATCAATTCTTGTACTTTGGGGAAACCCTTCAACCCCATCCCAAACCTTGGCCCAGCTTGCCCACAATCTCACACATTCCTCGTTTGGCTTTAATAGCATCTCCTTAATCCGCCAATCATCAAACAGTCTCAATAACCGGTTCCTCCCCAGACCCTCAATTAAGACCCGAGCTGTGTTGGTGTGTGATGATGACGTTGAAGTCGATTCCAAATCCTTCGAATTTGCATTTAGAATGTGGGGATCAAACCCTGATCGTCTCGTTGGGTTCTTTGTCAGATCACATGACATAGACTTATCGAAGAAAGAGTGGATTTATACTATGCATCCAGACAAGTACTCAATCATGCTCACTAAGTTTATGATTTTGAAAAGTAGGTATTTGTTTCAGTACAGCTGTGCAAGAGGGCCTGTGATGGCCAACATGAGGAAGATCGTGGATAAGATGCATAATTGCGAGGACATATTAATGAATTTTGTGGTCGCGGATGAGGCAAATGCAGGACCTATATTAGTGGGTGCCAAGAGGGTCAGGGATTGGGGGGATGCACGCAATGATCATGATCATATGGATGGTCAAGGACGGCGAGGATTGATTGGGGAGGTTGCACAGGTGGGTTTGAGTAGTAGGAAAGAGAAGCATAGGAAGAGAAGAGGGGAGTGTATAGGTGAGTTTCATAGGGTGTTGGGGAGAATGCCTCTGAGGTATAGTTATGGGAAGGTTGTCAATTCTGTTGGTGAACAAGGGCTGTGTCAAAAAGGAGGGAAATTGGTGCTGTGTGATCAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006029 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015012 GO:0016020 GO:0016740 GO:0016757 GO:0019538 GO:0030166 GO:0030201 GO:0030307 GO:0034645 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0065007 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

343

Amino Acids

38.53

Weight (kDa)

9.21

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	51 - 323	8.5e-76	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80290 AT1G80290
fragaria_vesca	FvH4_2g36410 FvH4_2g36410
malus_domestica	MD08G1123400.v1.1 MD15G1102400.v1.1
prunus_persica	Prupe.1G455400_v2.0.a1
pyrus_communis	pycom08g10260
rosa_chinensis	RchiOBHm_Chr6g0305491
rosa_laevigata	RLG00000010887
rosa_multiflora	Rmu_co8349055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162760
rosa_rugosa	Rorug06G0340500 Rorug06G0340600.1
rosa_samantha	Rh6AG452700 Rh6BG449100 Rh6CG466400 Rh6DG453100
rosa_wichuraiana	Rw6G039450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	437
AccB1I	GGYRCC	1 cut(s)	755
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	141
AccII	CGCG	1 cut(s)	722
AciI	CCGC	3 cut(s)	139, 349, 722
AclWI	GGATC	3 cut(s)	92, 101, 487
AcoI	YGGCCR	1 cut(s)	654
AcsI	RAATTY	2 cut(s)	458, 709
AfaI	GTAC	4 cut(s)	85, 252, 575, 629
AfiI	CCNNNNNNNGG	2 cut(s)	286, 663
AgeI	ACCGGT	1 cut(s)	375
AgsI	TTSAA	3 cut(s)	270, 437, 607
AluBI	AGCT	5 cut(s)	36, 116, 295, 410, 633
AluI	AGCT	5 cut(s)	36, 116, 295, 410, 633
Alw26I	GTCTC	2 cut(s)	371, 500
AlwI	GGATC	3 cut(s)	92, 101, 487
Ama87I	CYCGRG	1 cut(s)	405
AoxI	GGCC	3 cut(s)	288, 644, 654
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	2 cut(s)	458, 709
AseI	ATTAAT	1 cut(s)	704
AsiGI	ACCGGT	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	265
AspS9I	GGNCC	5 cut(s)	124, 145, 289, 644, 740
AsuHPI	GGTGA	3 cut(s)	202, 917, 986
AsuII	TTCGAA	1 cut(s)	456
AvaI	CYCGRG	1 cut(s)	405
AvaII	GGWCC	3 cut(s)	124, 145, 740
BalI	TGGCCA	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	755
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	3 cut(s)	283, 646, 803
BceAI	ACGGC	1 cut(s)	836
BclI	TGATCA	3 cut(s)	793, 799, 1018
BcoDI	GTCTC	2 cut(s)	371, 500
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	222
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	575
Bme18I	GGWCC	3 cut(s)	124, 145, 740
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	5 cut(s)	124, 145, 289, 644, 740
BmiI	GGNNCC	3 cut(s)	126, 380, 757
BmsI	GCATC	5 cut(s)	195, 345, 571, 672, 772
BplI	GAGNNNNNCTC	2 cut(s)	919, 951
Bpu1102I	GCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	456
BsaBI	GATNNNNATC	1 cut(s)	798
BsaJI	CCNNGG	1 cut(s)	285
BsaWI	WCCGGW	2 cut(s)	80, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 663
Bse118I	RCCGGY	1 cut(s)	375
Bse3DI	GCAATG	2 cut(s)	8, 796
Bse8I	GATNNNNATC	1 cut(s)	798
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	7 cut(s)	67, 186, 275, 562, 730, 787, 814
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	2 cut(s)	286, 663
BseMI	GCAATG	2 cut(s)	8, 796
BseMII	CTCAG	3 cut(s)	131, 168, 929
BseRI	GAGGAG	2 cut(s)	185, 217
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	722
BshFI	GGCC	3 cut(s)	290, 646, 656
BshNI	GGYRCC	1 cut(s)	755
BshTI	ACCGGT	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	2 cut(s)	81, 376
BslI	CCNNNNNNNGG	2 cut(s)	286, 663
BsmAI	GTCTC	2 cut(s)	371, 500
BsmBI	CGTCTC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	936
BsnI	GGCC	3 cut(s)	290, 646, 656
BsoBI	CYCGRG	1 cut(s)	405
Bsp119I	TTCGAA	1 cut(s)	456
Bsp143I	GATC	9 cut(s)	97, 106, 479, 490, 515, 669, 793, 799, 1018
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	3 cut(s)	139, 349, 722
BspANI	GGCC	3 cut(s)	290, 646, 656
BspCNI	CTCAG	3 cut(s)	130, 169, 930
BspFNI	CGCG	1 cut(s)	722
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	3 cut(s)	126, 380, 757
BspPI	GGATC	3 cut(s)	92, 101, 487
BspT104I	TTCGAA	1 cut(s)	456
BspT107I	GGYRCC	1 cut(s)	755
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	2 cut(s)	8, 796
BsrFI	RCCGGY	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	9 cut(s)	97, 106, 479, 490, 515, 669, 793, 799, 1018
BssT1I	CCWWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	157, 365
Bst6I	CTCTTC	2 cut(s)	878, 883
BstBI	TTCGAA	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	297, 787
BstDEI	CTNAG	4 cut(s)	117, 177, 591, 938
BstF5I	GGATG	7 cut(s)	67, 186, 275, 562, 730, 787, 814
BstFNI	CGCG	1 cut(s)	722
BstKTI	GATC	9 cut(s)	100, 109, 482, 493, 518, 672, 796, 802, 1021
BstMAI	GTCTC	2 cut(s)	371, 500
BstMBI	GATC	9 cut(s)	97, 106, 479, 490, 515, 669, 793, 799, 1018
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 333, 728
BstSFI	CTRYAG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	722
BstV1I	GCAGC	1 cut(s)	233
BsuRI	GGCC	3 cut(s)	290, 646, 656
BtsCI	GGATG	7 cut(s)	67, 186, 275, 562, 730, 787, 814
Cac8I	GCNNGC	2 cut(s)	297, 787
CciI	TCATGA	1 cut(s)	796
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	5 cut(s)	124, 145, 289, 644, 740
Csp6I	GTAC	4 cut(s)	84, 251, 574, 628
CspAI	ACCGGT	1 cut(s)	375
CviAII	CATG	4 cut(s)	521, 583, 661, 797
CviQI	GTAC	4 cut(s)	84, 251, 574, 628
DdeI	CTNAG	4 cut(s)	117, 177, 591, 938
DpnI	GATC	9 cut(s)	99, 108, 481, 492, 517, 671, 795, 801, 1020
DpnII	GATC	9 cut(s)	97, 106, 479, 490, 515, 669, 793, 799, 1018
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	1 cut(s)	654
Eam1104I	CTCTTC	2 cut(s)	878, 883
EarI	CTCTTC	2 cut(s)	878, 883
EciI	GGCGGA	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	285
Eco47I	GGWCC	3 cut(s)	124, 145, 740
Eco88I	CYCGRG	1 cut(s)	405
EcoO109I	RGGNCCY	3 cut(s)	124, 644, 740
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	2 cut(s)	564, 687
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	4 cut(s)	524, 586, 664, 800
FatI	CATG	4 cut(s)	520, 582, 660, 796
FauNDI	CATATG	2 cut(s)	217, 804
FbaI	TGATCA	3 cut(s)	793, 799, 1018
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	7 cut(s)	74, 173, 262, 549, 737, 794, 821
Fsp4HI	GCNGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	222
GsaI	CCCAGC	1 cut(s)	295
HaeIII	GGCC	3 cut(s)	290, 646, 656
HapII	CCGG	2 cut(s)	81, 376
Hin1II	CATG	4 cut(s)	524, 586, 664, 800
HinfI	GANTC	2 cut(s)	179, 443
HpaII	CCGG	2 cut(s)	81, 376
HphI	GGTGA	3 cut(s)	202, 917, 986
Hpy166II	GTNNAC	1 cut(s)	977
Hpy188I	TCNGA	5 cut(s)	97, 145, 178, 515, 939
Hpy188III	TCNNGA	3 cut(s)	59, 566, 797
Hpy8I	GTNNAC	1 cut(s)	977
HpyAV	CCTTC	3 cut(s)	276, 463, 949
HpyCH4III	ACNGT	2 cut(s)	157, 365
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	9 cut(s)	13, 221, 464, 562, 638, 685, 737, 785, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 333, 728
HpyF3I	CTNAG	4 cut(s)	117, 177, 591, 938
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	4 cut(s)	524, 586, 664, 800
Ksp22I	TGATCA	3 cut(s)	793, 799, 1018
Kzo9I	GATC	9 cut(s)	97, 106, 479, 490, 515, 669, 793, 799, 1018
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	5 cut(s)	195, 345, 571, 672, 772
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	180, 208
MalI	GATC	9 cut(s)	99, 108, 481, 492, 517, 671, 795, 801, 1020
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	9 cut(s)	97, 106, 479, 490, 515, 669, 793, 799, 1018
MboII	GAAGA	7 cut(s)	37, 40, 69, 550, 679, 895, 900
MlsI	TGGCCA	1 cut(s)	656
MluCI	AATT	8 cut(s)	87, 243, 396, 458, 688, 709, 964, 1004
MluNI	TGGCCA	1 cut(s)	656
MlyI	GAGTC	1 cut(s)	188
Mox20I	TGGCCA	1 cut(s)	656
Mph1103I	ATGCAT	2 cut(s)	564, 687
MroXI	GAANNNNTTC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	656
MseI	TTAA	4 cut(s)	330, 344, 399, 704
MslI	CAYNNNNRTG	2 cut(s)	704, 807
Msp20I	TGGCCA	1 cut(s)	656
MspA1I	CMGCKG	1 cut(s)	633
MspI	CCGG	2 cut(s)	81, 376
Mva1269I	GAATGC	1 cut(s)	936
MvnI	CGCG	1 cut(s)	722
MwoI	GCNNNNNNNGC	3 cut(s)	296, 333, 728
NdeI	CATATG	2 cut(s)	217, 804
NdeII	GATC	9 cut(s)	97, 106, 479, 490, 515, 669, 793, 799, 1018
NlaIII	CATG	4 cut(s)	524, 586, 664, 800
NlaIV	GGNNCC	3 cut(s)	126, 380, 757
NmuCI	GTSAC	2 cut(s)	180, 208
NsiI	ATGCAT	2 cut(s)	564, 687
NspV	TTCGAA	1 cut(s)	456
PagI	TCATGA	1 cut(s)	796
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PctI	GAATGC	1 cut(s)	936
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	443
PflMI	CCANNNNNTGG	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	375
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PpuMI	RGGWCCY	2 cut(s)	124, 740
PshBI	ATTAAT	1 cut(s)	704
Psp5II	RGGWCCY	2 cut(s)	124, 740
PspFI	CCCAGC	1 cut(s)	291
PspN4I	GGNNCC	3 cut(s)	126, 380, 757
PspPI	GGNCC	5 cut(s)	124, 145, 289, 644, 740
PspPPI	RGGWCCY	2 cut(s)	124, 740
PvuII	CAGCTG	1 cut(s)	633
RsaI	GTAC	4 cut(s)	85, 252, 575, 629
RsaNI	GTAC	4 cut(s)	84, 251, 574, 628
RseI	CAYNNNNRTG	2 cut(s)	704, 807
SaqAI	TTAA	4 cut(s)	330, 344, 399, 704
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	9 cut(s)	97, 106, 479, 490, 515, 669, 793, 799, 1018
Sau96I	GGNCC	5 cut(s)	124, 145, 289, 644, 740
ScaI	AGTACT	1 cut(s)	575
SchI	GAGTC	1 cut(s)	188
SfaNI	GCATC	5 cut(s)	195, 345, 571, 672, 772
SfcI	CTRYAG	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	456
SinI	GGWCC	3 cut(s)	124, 145, 740
SmiMI	CAYNNNNRTG	2 cut(s)	704, 807
Sse9I	AATT	8 cut(s)	87, 243, 396, 458, 688, 709, 964, 1004
SsiI	CCGC	3 cut(s)	139, 349, 722
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	157, 365
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	441, 456, 536
TasI	AATT	8 cut(s)	87, 243, 396, 458, 688, 709, 964, 1004
TatI	WGTACW	3 cut(s)	250, 573, 627
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	4 cut(s)	330, 344, 399, 704
Tru9I	TTAA	4 cut(s)	330, 344, 399, 704
TseFI	GTSAC	2 cut(s)	180, 208
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	2 cut(s)	180, 208
TspDTI	ATGAA	3 cut(s)	17, 722, 902
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	3 cut(s)	124, 145, 740
VspI	ATTAAT	1 cut(s)	704
XapI	RAATTY	2 cut(s)	458, 709
XmnI	GAANNNNTTC	1 cut(s)	265
ZrmI	AGTACT	1 cut(s)	575
Zsp2I	ATGCAT	2 cut(s)	564, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.