Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011884

Physical Location & Seq

Genomic Coordinates Reverse (-)

38238184 .. 38240847

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G455400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAGTCAGAAAACAAAAGGGTACCTAGAGATGTATTCACTGCCAACAAATTTTGTAATTCTCATGTTCTTATTCTTCTTCTACTTTGGGGATGTTCTTGTGCTATCTCTCCGTACGCTTTCCATGGATCCTTGCAACCCCACAGCCCAACAGGAACCACAAACTCTCATCTCGGACCAACTAACAGTCCTAATCAATGGTTACTCCGAGTCTCGCATCCCTCTCCTCCAATCCATCATTGCCTCATATGCAGCCTCATCTTTGGTCTCCTCCATTCTTGTACTCTGGGGAAACCCTTCCACCCCATCCCAAACCTTGGCACAACTGGCCCACAATCTCACACAATCCTCATTTGGGTTCAATGGCATTTCTGTAATCCGCCAAACATCAGACAGCCTCAATAATCGGTTCCTCCCCAGACCCTCAATTAAGACCCGAGCAGTCTTGATCTGTGATGATGATGTTGAAGTTGACCCTAAATCCTTCGAATTTGCTTTTAAAATGTGGGGATCAAACCCAGACCGTCTGGTTGGGTTCTTTGTCAGGTCACATGACATAGATTTATCAAAGAAAGAGTGGATTTACACCATTCATCCAGACAAGTACTCAATCATGCTCACAAAGTTTATGCTTTTGAAAAGCGAGTATTTGTTTCGGTACAGCTGTGCAGGAGGACCGGTCATGGCACACATGAGGAGGATCGTGGATAAGATGAATAATTGCGAGGACATATTGATGAATTTTGTGGTGGCGGATGAGGTTAATTCAGGGCCTATATTGGTGGGGGCTGAGAGGGTTAGGGATTGGGGGGATGCACGCAATGATCATGATGATGATGATGGTAATGGACGGCACAGATTGATTGGGGAGGTGGCACAGGTGGGTTTGAGTAGTAGGAAAGGAAAGCATAGGAAGAGGAGAGGGGAGTGTATAGGCGAGTTTCATAGGGTGTTGGGGAGAATGCCTTTGAGGTTTAGTTATGGGAAAGTAGTCAACTCTGTTGGTGAACAAGGGCTGTGTCAAAAAGGGGGGAAATTGGTGTTTTGTGATCAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006029 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015012 GO:0016020 GO:0016740 GO:0016757 GO:0019538 GO:0030166 GO:0030201 GO:0030307 GO:0034645 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0065007 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

353

Amino Acids

39.7

Weight (kDa)

8.4

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80290 AT1G80290
fragaria_vesca	FvH4_2g36410 FvH4_2g36410
malus_domestica	MD08G1123400.v1.1 MD15G1102400.v1.1
prunus_persica	Prupe.1G455400_v2.0.a1
pyrus_communis	pycom08g10260
rosa_chinensis	RchiOBHm_Chr6g0305491
rosa_laevigata	RLG00000010887
rosa_multiflora	Rmu_co8349055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162760
rosa_rugosa	Rorug06G0340500 Rorug06G0340600.1
rosa_samantha	Rh6AG452700 Rh6BG449100 Rh6CG466400 Rh6DG453100
rosa_wichuraiana	Rw6G039450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	21
AccB7I	CCANNNNNTGG	1 cut(s)	316
AciI	CCGC	2 cut(s)	379, 752
AclWI	GGATC	4 cut(s)	122, 135, 517, 707
AcsI	RAATTY	3 cut(s)	49, 488, 739
AfaI	GTAC	5 cut(s)	23, 115, 282, 605, 659
AfiI	CCNNNNNNNGG	2 cut(s)	316, 354
AgeI	ACCGGT	1 cut(s)	676
AgsI	TTSAA	3 cut(s)	361, 467, 637
AluBI	AGCT	1 cut(s)	663
AluI	AGCT	1 cut(s)	663
Alw26I	GTCTC	2 cut(s)	216, 271
AlwI	GGATC	4 cut(s)	122, 135, 517, 707
Ama87I	CYCGRG	1 cut(s)	435
AoxI	GGCC	2 cut(s)	327, 770
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	3 cut(s)	49, 488, 739
AsiGI	ACCGGT	1 cut(s)	676
Asp700I	GAANNNNTTC	1 cut(s)	295
Asp718I	GGTACC	1 cut(s)	21
AspS9I	GGNCC	4 cut(s)	175, 328, 674, 770
AsuHPI	GGTGA	1 cut(s)	1016
AsuII	TTCGAA	1 cut(s)	486
AvaI	CYCGRG	1 cut(s)	435
AvaII	GGWCC	2 cut(s)	175, 674
BaeI	ACNNNNGTAYC	2 cut(s)	649, 682
BamHI	GGATCC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	3 cut(s)	242, 313, 833
BceAI	ACGGC	1 cut(s)	866
BclI	TGATCA	2 cut(s)	823, 1048
BcoDI	GTCTC	2 cut(s)	216, 271
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
BmcAI	AGTACT	1 cut(s)	605
Bme18I	GGWCC	2 cut(s)	175, 674
BmeT110I	CYCGRG	1 cut(s)	435
BmgT120I	GGNCC	4 cut(s)	175, 328, 674, 770
BmiI	GGNNCC	4 cut(s)	23, 129, 156, 410
BmsI	GCATC	2 cut(s)	225, 802
Bpu14I	TTCGAA	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	123, 315
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	2 cut(s)	663, 693
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 354
Bse118I	RCCGGY	1 cut(s)	676
Bse1I	ACTGG	1 cut(s)	330
Bse3DI	GCAATG	2 cut(s)	237, 826
BseDI	CCNNGG	2 cut(s)	123, 315
BseGI	GGATG	6 cut(s)	97, 216, 305, 592, 760, 817
BseLI	CCNNNNNNNGG	2 cut(s)	316, 354
BseMI	GCAATG	2 cut(s)	237, 826
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	1 cut(s)	330
BseRI	GAGGAG	4 cut(s)	215, 259, 709, 931
BseXI	GCAGC	1 cut(s)	263
BsgI	GTGCAG	1 cut(s)	687
BshFI	GGCC	2 cut(s)	329, 772
BshNI	GGYRCC	1 cut(s)	21
BshTI	ACCGGT	1 cut(s)	676
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	677
BsiWI	CGTACG	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	316, 354
BsmAI	GTCTC	2 cut(s)	216, 271
BsmI	GAATGC	1 cut(s)	966
BsnI	GGCC	2 cut(s)	329, 772
Bso31I	GGTCTC	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	435
Bsp119I	TTCGAA	1 cut(s)	486
Bsp143I	GATC	6 cut(s)	127, 447, 509, 699, 823, 1048
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	2 cut(s)	379, 752
BspANI	GGCC	2 cut(s)	329, 772
BspCNI	CTCAG	1 cut(s)	781
BspHI	TCATGA	1 cut(s)	826
BspLI	GGNNCC	4 cut(s)	23, 129, 156, 410
BspPI	GGATC	4 cut(s)	122, 135, 517, 707
BspT104I	TTCGAA	1 cut(s)	486
BspT107I	GGYRCC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	271
BsrDI	GCAATG	2 cut(s)	237, 826
BsrFI	RCCGGY	1 cut(s)	676
BsrI	ACTGG	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	676
BssECI	CCNNGG	2 cut(s)	123, 315
BssMI	GATC	6 cut(s)	127, 447, 509, 699, 823, 1048
BssT1I	CCWWGG	2 cut(s)	123, 315
Bst4CI	ACNGT	2 cut(s)	187, 524
Bst6I	CTCTTC	1 cut(s)	908
BstBI	TTCGAA	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	817
BstDEI	CTNAG	1 cut(s)	789
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	6 cut(s)	97, 216, 305, 592, 760, 817
BstKTI	GATC	6 cut(s)	130, 450, 512, 702, 826, 1051
BstMAI	GTCTC	2 cut(s)	216, 271
BstMBI	GATC	6 cut(s)	127, 447, 509, 699, 823, 1048
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 326
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	329, 772
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	6 cut(s)	97, 216, 305, 592, 760, 817
BtsI	GCAGTG	1 cut(s)	38
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	817
CciI	TCATGA	1 cut(s)	826
Cfr10I	RCCGGY	1 cut(s)	676
Cfr13I	GGNCC	4 cut(s)	175, 328, 674, 770
Csp6I	GTAC	5 cut(s)	22, 114, 281, 604, 658
CspAI	ACCGGT	1 cut(s)	676
CviAII	CATG	7 cut(s)	64, 124, 551, 613, 682, 691, 827
CviJI	RGCY	8 cut(s)	146, 254, 329, 396, 663, 772, 788, 1015
CviKI_1	RGCY	8 cut(s)	146, 254, 329, 396, 663, 772, 788, 1015
CviQI	GTAC	5 cut(s)	22, 114, 281, 604, 658
DdeI	CTNAG	1 cut(s)	789
DpnI	GATC	6 cut(s)	129, 449, 511, 701, 825, 1050
DpnII	GATC	6 cut(s)	127, 447, 509, 699, 823, 1048
DraI	TTTAAA	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	908
EarI	CTCTTC	1 cut(s)	908
EciI	GGCGGA	2 cut(s)	368, 767
Eco130I	CCWWGG	2 cut(s)	123, 315
Eco31I	GGTCTC	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	175, 674
Eco88I	CYCGRG	1 cut(s)	435
EcoO109I	RGGNCCY	1 cut(s)	770
EcoT14I	CCWWGG	2 cut(s)	123, 315
ErhI	CCWWGG	2 cut(s)	123, 315
FaeI	CATG	7 cut(s)	67, 127, 554, 616, 685, 694, 830
FatI	CATG	7 cut(s)	63, 123, 550, 612, 681, 690, 826
FauNDI	CATATG	1 cut(s)	247
FbaI	TGATCA	2 cut(s)	823, 1048
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	6 cut(s)	104, 203, 292, 579, 767, 824
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	329, 772
HapII	CCGG	1 cut(s)	677
Hin1II	CATG	7 cut(s)	67, 127, 554, 616, 685, 694, 830
HincII	GTYRAC	2 cut(s)	472, 994
HindII	GTYRAC	2 cut(s)	472, 994
HinfI	GANTC	2 cut(s)	4, 209
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	1 cut(s)	1016
Hpy166II	GTNNAC	3 cut(s)	472, 994, 1007
Hpy188I	TCNGA	4 cut(s)	9, 175, 208, 391
Hpy188III	TCNNGA	3 cut(s)	445, 596, 827
Hpy8I	GTNNAC	3 cut(s)	472, 994, 1007
HpyAV	CCTTC	2 cut(s)	306, 493
HpyCH4III	ACNGT	2 cut(s)	187, 524
HpyCH4V	TGCA	4 cut(s)	135, 251, 668, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 326
HpyF3I	CTNAG	1 cut(s)	789
Hsp92II	CATG	7 cut(s)	67, 127, 554, 616, 685, 694, 830
KpnI	GGTACC	1 cut(s)	25
Ksp22I	TGATCA	2 cut(s)	823, 1048
Kzo9I	GATC	6 cut(s)	127, 447, 509, 699, 823, 1048
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	2 cut(s)	225, 802
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	200, 546
MalI	GATC	6 cut(s)	129, 449, 511, 701, 825, 1050
MboI	GATC	6 cut(s)	127, 447, 509, 699, 823, 1048
MboII	GAAGA	3 cut(s)	67, 70, 925
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	8 cut(s)	49, 57, 426, 488, 718, 739, 763, 1034
MlyI	GAGTC	2 cut(s)	13, 218
MroXI	GAANNNNTTC	1 cut(s)	295
MseI	TTAA	3 cut(s)	429, 498, 762
MslI	CAYNNNNRTG	2 cut(s)	734, 831
MspA1I	CMGCKG	1 cut(s)	663
MspI	CCGG	1 cut(s)	677
Mva1269I	GAATGC	1 cut(s)	966
MwoI	GCNNNNNNNGC	2 cut(s)	248, 326
NcoI	CCATGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	6 cut(s)	127, 447, 509, 699, 823, 1048
NlaIII	CATG	7 cut(s)	67, 127, 554, 616, 685, 694, 830
NlaIV	GGNNCC	4 cut(s)	23, 129, 156, 410
NmuCI	GTSAC	1 cut(s)	546
NspV	TTCGAA	1 cut(s)	486
PagI	TCATGA	1 cut(s)	826
PctI	GAATGC	1 cut(s)	966
PdmI	GAANNNNTTC	1 cut(s)	295
Pfl23II	CGTACG	1 cut(s)	113
PflMI	CCANNNNNTGG	1 cut(s)	316
PinAI	ACCGGT	1 cut(s)	676
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	2 cut(s)	12, 217
PpsI	GAGTC	2 cut(s)	12, 217
PspLI	CGTACG	1 cut(s)	113
PspN4I	GGNNCC	4 cut(s)	23, 129, 156, 410
PspPI	GGNCC	4 cut(s)	175, 328, 674, 770
PsuI	RGATCY	1 cut(s)	127
PvuII	CAGCTG	1 cut(s)	663
RsaI	GTAC	5 cut(s)	23, 115, 282, 605, 659
RsaNI	GTAC	5 cut(s)	22, 114, 281, 604, 658
RseI	CAYNNNNRTG	2 cut(s)	734, 831
SaqAI	TTAA	3 cut(s)	429, 498, 762
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	6 cut(s)	127, 447, 509, 699, 823, 1048
Sau96I	GGNCC	4 cut(s)	175, 328, 674, 770
ScaI	AGTACT	1 cut(s)	605
SchI	GAGTC	2 cut(s)	13, 218
SetI	ASST	8 cut(s)	27, 317, 548, 665, 762, 873, 882, 974
SfaNI	GCATC	2 cut(s)	225, 802
SfuI	TTCGAA	1 cut(s)	486
SinI	GGWCC	2 cut(s)	175, 674
SmiMI	CAYNNNNRTG	2 cut(s)	734, 831
Sse9I	AATT	8 cut(s)	49, 57, 426, 488, 718, 739, 763, 1034
SsiI	CCGC	2 cut(s)	379, 752
SspMI	CTAG	1 cut(s)	26
StyI	CCWWGG	2 cut(s)	123, 315
TaaI	ACNGT	2 cut(s)	187, 524
TaqI	TCGA	1 cut(s)	486
TasI	AATT	8 cut(s)	49, 57, 426, 488, 718, 739, 763, 1034
TatI	WGTACW	2 cut(s)	280, 603
Tru1I	TTAA	3 cut(s)	429, 498, 762
Tru9I	TTAA	3 cut(s)	429, 498, 762
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	4 cut(s)	581, 728, 752, 932
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	45
Van91I	CCANNNNNTGG	1 cut(s)	316
VpaK11BI	GGWCC	2 cut(s)	175, 674
XapI	RAATTY	3 cut(s)	49, 488, 739
XmnI	GAANNNNTTC	1 cut(s)	295
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.