Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011884

Physical Location & Seq

Genomic Coordinates Reverse (-)

7247480 .. 7249020

Gene Structure 1541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1102400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGAATTCGTTGCCAACTACCATTGTGATTCTCATATTTTTATTCATTTTCTGCTCTGTGGGTGTTCATGTGTTATCTCTTCGTACACTTCCGATCGATCCTTGCAACCCTACAGCGCAACAAGACCCGCGAACTCTCATCTCGGACCAGCTAACTGTACTCATCAATGGCTACTCTGAGTCTCGCATCCCACTCCTACAATCCATTGTCACCACATATGCAGCCTCTTCTTTGGTTTCATCCATTCTCGTGCTCTGGGGAAACCCTTCCACCCTGTCCCAGACCTTGTCCCAACTGGCTCGCAATCTCACGGATTCATCCTTTGGATTCAGTGGCATCTCTGTAATCCGCCAAGCATCGGACAGCCTCAATAACCGGTTCCTCCCCAGACCCGAAATTAAGACCCGAGCAGTTTTGGTCTGTGATGATGATGTTGAAGTTGACCCCAAATCCTTCGAATTTGCGTTTAGAATGTGGGGATCAAACCCAGATCGTCTGGTTGGGTTCTTTGTCAGGTCACACGACATAGATTTGTCAAGGAAAGAGTGGATCTACACCATTCATCCAGACAAGTACTCTATCATGCTCACCAAGTTTATGCTTTTGAAAAGCCAGTATTTCTATCGGTACAGCTGCGCAGGACGGGTGATGGCCAGCATGAGGAAGATTGTGGATAAGGCGCAGAACTGTGAGGACTTATTGATGAATTTTGTGGTGGCTGATGAGGTTAATGCAGGGCCTATATTGGTAGGAGCCAAGAGGGTTAGGGATTGGGGAGATGCACGTAATGATCACGATGATGGTGATGGTGATGCACGACGAGGATTGACTGGGGAGGTTGCACAGGTGGGTTTGAGCAGTAGGAAAACGAAGCATAGGACGAGGAGAGGGGAGTGTATAAGTGAGTTTCATAGGGTGCTGGGGAGAATGCCTTTGAGGTTCAGTTATGGGAAGGTAGTCAACTCTGTCGGTGAACAAGGGTTGTGTCAAAAAGGAGGGAAATTGGTGTTTTGTGATCAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006029 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015012 GO:0016020 GO:0016740 GO:0016757 GO:0019538 GO:0030166 GO:0030201 GO:0030307 GO:0034645 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0065007 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

342

Amino Acids

38.2

Weight (kDa)

8.88

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	51 - 321	2.6e-73	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80290 AT1G80290
fragaria_vesca	FvH4_2g36410 FvH4_2g36410
malus_domestica	MD08G1123400.v1.1 MD15G1102400.v1.1
prunus_persica	Prupe.1G455400_v2.0.a1
pyrus_communis	pycom08g10260
rosa_chinensis	RchiOBHm_Chr6g0305491
rosa_laevigata	RLG00000010887
rosa_multiflora	Rmu_co8349055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162760
rosa_rugosa	Rorug06G0340500 Rorug06G0340600.1
rosa_samantha	Rh6AG452700 Rh6BG449100 Rh6CG466400 Rh6DG453100
rosa_wichuraiana	Rw6G039450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	637
AccII	CGCG	1 cut(s)	130
AciI	CCGC	2 cut(s)	128, 349
AclWI	GGATC	3 cut(s)	92, 487, 557
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	3 cut(s)	4, 458, 706
AfaI	GTAC	4 cut(s)	85, 159, 575, 629
AfiI	CCNNNNNNNGG	2 cut(s)	358, 660
AgeI	ACCGGT	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	437, 607
AluBI	AGCT	2 cut(s)	151, 633
AluI	AGCT	2 cut(s)	151, 633
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	3 cut(s)	92, 487, 557
Ama87I	CYCGRG	1 cut(s)	405
AoxI	GGCC	2 cut(s)	651, 737
ApeKI	GCWGC	2 cut(s)	221, 633
ApoI	RAATTY	3 cut(s)	4, 458, 706
AsiGI	ACCGGT	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	265
AspLEI	GCGC	3 cut(s)	118, 638, 682
AspS9I	GGNCC	2 cut(s)	145, 737
AsuHPI	GGTGA	6 cut(s)	202, 580, 658, 815, 821, 983
AsuII	TTCGAA	1 cut(s)	456
AvaI	CYCGRG	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	653
BauI	CACGAG	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	233, 620
BccI	CCATC	3 cut(s)	643, 794, 800
BclI	TGATCA	2 cut(s)	790, 1015
BcoDI	GTCTC	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	2 cut(s)	222, 634
BlsI	GCNGC	2 cut(s)	223, 635
BmcAI	AGTACT	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	2 cut(s)	145, 737
BmiI	GGNNCC	2 cut(s)	380, 754
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	5 cut(s)	195, 345, 365, 769, 802
BmuI	ACTGGG	1 cut(s)	840
Bpu14I	TTCGAA	1 cut(s)	456
Bsa29I	ATCGAT	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	785
BsaWI	WCCGGW	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 660
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	3 cut(s)	300, 613, 835
BseCI	ATCGAT	1 cut(s)	96
BseGI	GGATG	4 cut(s)	186, 239, 317, 562
BseLI	CCNNNNNNNGG	2 cut(s)	358, 660
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	3 cut(s)	300, 613, 835
BseRI	GAGGAG	1 cut(s)	898
BseXI	GCAGC	2 cut(s)	233, 620
BseYI	CCCAGC	1 cut(s)	919
Bsh1236I	CGCG	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	653, 739
BshTI	ACCGGT	1 cut(s)	375
BshVI	ATCGAT	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	376
BslFI	GGGAC	2 cut(s)	262, 274
BslI	CCNNNNNNNGG	2 cut(s)	358, 660
BsmAI	GTCTC	1 cut(s)	186
BsmFI	GGGAC	2 cut(s)	262, 274
BsmI	GAATGC	1 cut(s)	933
BsnI	GGCC	2 cut(s)	653, 739
BsoBI	CYCGRG	1 cut(s)	405
Bsp119I	TTCGAA	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	7 cut(s)	93, 97, 479, 490, 549, 790, 1015
BspACI	CCGC	2 cut(s)	128, 349
BspANI	GGCC	2 cut(s)	653, 739
BspCNI	CTCAG	1 cut(s)	169
BspDI	ATCGAT	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	380, 754
BspPI	GGATC	3 cut(s)	92, 487, 557
BspT104I	TTCGAA	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	375
BsrI	ACTGG	3 cut(s)	300, 613, 835
BssAI	RCCGGY	1 cut(s)	375
BssMI	GATC	7 cut(s)	93, 97, 479, 490, 549, 790, 1015
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	157, 689
Bst6I	CTCTTC	2 cut(s)	84, 232
BstBAI	YACGTR	1 cut(s)	785
BstBI	TTCGAA	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	301, 655
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	4 cut(s)	186, 239, 317, 562
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	3 cut(s)	118, 638, 682
BstKTI	GATC	7 cut(s)	96, 100, 482, 493, 552, 793, 1018
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	7 cut(s)	93, 97, 479, 490, 549, 790, 1015
BstMCI	CGRYCG	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	111
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	2 cut(s)	233, 620
BstX2I	RGATCY	1 cut(s)	549
BstYI	RGATCY	1 cut(s)	549
Bsu15I	ATCGAT	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	653, 739
BsuTUI	ATCGAT	1 cut(s)	96
BtsCI	GGATG	4 cut(s)	186, 239, 317, 562
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	301, 655
CfoI	GCGC	3 cut(s)	118, 638, 682
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	2 cut(s)	145, 737
ClaI	ATCGAT	1 cut(s)	96
Csp6I	GTAC	4 cut(s)	84, 158, 574, 628
CspAI	ACCGGT	1 cut(s)	375
CviAII	CATG	3 cut(s)	68, 583, 658
CviQI	GTAC	4 cut(s)	84, 158, 574, 628
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	7 cut(s)	95, 99, 481, 492, 551, 792, 1017
DpnII	GATC	7 cut(s)	93, 97, 479, 490, 549, 790, 1015
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	2 cut(s)	84, 232
EarI	CTCTTC	2 cut(s)	84, 232
EciI	GGCGGA	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	4
FaeI	CATG	3 cut(s)	71, 586, 661
FaqI	GGGAC	2 cut(s)	262, 274
FatI	CATG	3 cut(s)	67, 582, 657
FauI	CCCGC	1 cut(s)	135
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	2 cut(s)	790, 1015
Fnu4HI	GCNGC	2 cut(s)	222, 634
FokI	GGATG	4 cut(s)	173, 226, 304, 549
Fsp4HI	GCNGC	2 cut(s)	222, 634
FspI	TGCGCA	1 cut(s)	637
GlaI	GCGC	3 cut(s)	117, 637, 681
GluI	GCNGC	2 cut(s)	222, 634
GsaI	CCCAGC	1 cut(s)	923
HaeIII	GGCC	2 cut(s)	653, 739
HapII	CCGG	1 cut(s)	376
HhaI	GCGC	3 cut(s)	118, 638, 682
Hin1II	CATG	3 cut(s)	71, 586, 661
Hin6I	GCGC	3 cut(s)	116, 636, 680
HinP1I	GCGC	3 cut(s)	116, 636, 680
HincII	GTYRAC	2 cut(s)	442, 961
HindII	GTYRAC	2 cut(s)	442, 961
HinfI	GANTC	4 cut(s)	28, 179, 314, 327
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	6 cut(s)	202, 580, 658, 815, 821, 983
Hpy166II	GTNNAC	4 cut(s)	86, 442, 961, 974
Hpy188I	TCNGA	4 cut(s)	93, 145, 178, 361
Hpy188III	TCNNGA	2 cut(s)	566, 794
Hpy8I	GTNNAC	4 cut(s)	86, 442, 961, 974
Hpy99I	CGWCG	1 cut(s)	822
HpyAV	CCTTC	3 cut(s)	276, 463, 946
HpyCH4III	ACNGT	2 cut(s)	157, 689
HpyCH4IV	ACGT	1 cut(s)	784
HpyCH4V	TGCA	6 cut(s)	105, 221, 734, 782, 815, 842
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	784
Hsp92II	CATG	3 cut(s)	71, 586, 661
HspAI	GCGC	3 cut(s)	116, 636, 680
Ksp22I	TGATCA	2 cut(s)	790, 1015
Kzo9I	GATC	7 cut(s)	93, 97, 479, 490, 549, 790, 1015
LmnI	GCTCC	1 cut(s)	752
Lsp1109I	GCAGC	2 cut(s)	233, 620
LweI	GCATC	5 cut(s)	195, 345, 365, 769, 802
MaeII	ACGT	1 cut(s)	784
MaeIII	GTNAC	2 cut(s)	208, 516
MalI	GATC	7 cut(s)	95, 99, 481, 492, 551, 792, 1017
MboI	GATC	7 cut(s)	93, 97, 479, 490, 549, 790, 1015
MboII	GAAGA	3 cut(s)	71, 219, 676
MflI	RGATCY	1 cut(s)	549
MhlI	GDGCHC	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	653
MluCI	AATT	5 cut(s)	4, 396, 458, 706, 1001
MluNI	TGGCCA	1 cut(s)	653
MlyI	GAGTC	1 cut(s)	188
Mox20I	TGGCCA	1 cut(s)	653
MroXI	GAANNNNTTC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	653
MseI	TTAA	2 cut(s)	399, 729
MslI	CAYNNNNRTG	2 cut(s)	248, 798
Msp20I	TGGCCA	1 cut(s)	653
MspA1I	CMGCKG	1 cut(s)	633
MspI	CCGG	1 cut(s)	376
Mva1269I	GAATGC	1 cut(s)	933
MvnI	CGCG	1 cut(s)	130
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	7 cut(s)	93, 97, 479, 490, 549, 790, 1015
NlaIII	CATG	3 cut(s)	71, 586, 661
NlaIV	GGNNCC	2 cut(s)	380, 754
NmuCI	GTSAC	2 cut(s)	208, 516
NsbI	TGCGCA	1 cut(s)	637
NspV	TTCGAA	1 cut(s)	456
PctI	GAATGC	1 cut(s)	933
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	3 cut(s)	28, 314, 327
PflFI	GACNNNGTC	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	223, 635
Ple19I	CGATCG	1 cut(s)	96
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	785
PspFI	CCCAGC	1 cut(s)	919
PspN4I	GGNNCC	2 cut(s)	380, 754
PspPI	GGNCC	2 cut(s)	145, 737
PsuI	RGATCY	1 cut(s)	549
PsyI	GACNNNGTC	1 cut(s)	286
PvuI	CGATCG	1 cut(s)	96
PvuII	CAGCTG	1 cut(s)	633
RsaI	GTAC	4 cut(s)	85, 159, 575, 629
RsaNI	GTAC	4 cut(s)	84, 158, 574, 628
RseI	CAYNNNNRTG	2 cut(s)	248, 798
SaqAI	TTAA	2 cut(s)	399, 729
SatI	GCNGC	2 cut(s)	222, 634
Sau3AI	GATC	7 cut(s)	93, 97, 479, 490, 549, 790, 1015
Sau96I	GGNCC	2 cut(s)	145, 737
ScaI	AGTACT	1 cut(s)	575
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	5 cut(s)	195, 345, 365, 769, 802
SfcI	CTRYAG	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	456
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	248, 798
Sse9I	AATT	5 cut(s)	4, 396, 458, 706, 1001
SsiI	CCGC	2 cut(s)	128, 349
TaaI	ACNGT	2 cut(s)	157, 689
TaiI	ACGT	1 cut(s)	787
TaqI	TCGA	2 cut(s)	96, 456
TasI	AATT	5 cut(s)	4, 396, 458, 706, 1001
TatI	WGTACW	2 cut(s)	157, 573
TfiI	GAWTC	3 cut(s)	28, 314, 327
Tru1I	TTAA	2 cut(s)	399, 729
Tru9I	TTAA	2 cut(s)	399, 729
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	2 cut(s)	208, 516
TseI	GCWGC	2 cut(s)	221, 633
Tsp45I	GTSAC	2 cut(s)	208, 516
TspDTI	ATGAA	8 cut(s)	17, 34, 56, 228, 306, 551, 719, 899
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	337
Tth111I	GACNNNGTC	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	3 cut(s)	4, 458, 706
XmnI	GAANNNNTTC	1 cut(s)	265
ZrmI	AGTACT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.