Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011884

Physical Location & Seq

Genomic Coordinates Reverse (-)

26669994 .. 26672807

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g36410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAATTGTGTGCGAACAACCTTTGTGATTCTTGGCTTCTTATTCTTCTTCTACTCTTGGGATGTTCTTGTGCTTTGTTCCCGTATCATTTCCTCTGATCACTGTGACCGTACAGCTCAGCAGGACCCAAGAACTCTCCGCTCTGACCAGCTAACGGTCCTCATCAATGGATACTCTGAGTCACGCATCCCTCTCCTTCAATCCATTGTCACTGCATATGCTGCATCCTCTTTGGTGTCATCAATTCTAGTCCTTTGGGGAAACCCTTCAACCCCATCCCAAACCTTGGCCCAACTTGCCAACAATCTCACACATTCCTCATTTGGCTTCAATAGCATCTCCTTAATCTGTCAATCATCAAACAGTCTCAATAACCGGTTCCTCCCCCGACCCTTAATTAAGACCCGAGCTGTGTTGGTGTGTGATGATGATGTTGAGGTTGATCCCAAATCCTTTGAGTTTGCATTTAGAATGTGGGGAGCAAACCCTGATCGTCTCATTGGGTTCTTTGTCAGATCACATGACATAGACTTATCAAAGAAAGAATGGATTTACACTGTGCATCCAGACAAGTATTCAATCATGCTCACTAAGTTTATGATTTTCAAAAGTCAGTACTTGTTTCAGTACAGCTGTGCAGGAGGGACTGTAATGGCCAACATGAGGAAGATTGTGGATAAGATGCATAATTGCGAGGACATATTAATGAACTTTGTGATTGCAGATGAGGTCAATGCCGGACCTATATTGGTTGGCGCTGAGAGGGTCAGGGATTGGGGGGATGCACGCAATGATCATGACAATAGGGATGGTGAAGGACGGCGAGGATTGAATGGGGAGGTTGCGCAAGTGGGTTTAAGTAGTAGGAAAGAGAAGCATAGGAAGAGAAGAGGGGAGTGTATAGGTCAGTTTCATAGGGTGTTGGGGAGAATGCCTCTGAGGTATAGTTATGGAAAGGTTGTCAACTCTGTTGGTGAACAAGGGCTGTGTCAAAAAGGAGGAAAATTGGTGCTTTGTGATCAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006029 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0015012 GO:0016020 GO:0016740 GO:0016757 GO:0019538 GO:0030166 GO:0030201 GO:0030307 GO:0034645 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0065007 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00534 ko01100 map00534 map01100

Pfam Domains

Protein Families

Glyco_transf_64

Protein Analysis

343

Amino Acids

38.64

Weight (kDa)

8.88

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_64	PF09258	51 - 323	4.8e-74	Glycosyl transferase family 64 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011884)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80290 AT1G80290
fragaria_vesca	FvH4_2g36410 FvH4_2g36410
malus_domestica	MD08G1123400.v1.1 MD15G1102400.v1.1
prunus_persica	Prupe.1G455400_v2.0.a1
pyrus_communis	pycom08g10260
rosa_chinensis	RchiOBHm_Chr6g0305491
rosa_laevigata	RLG00000010887
rosa_multiflora	Rmu_co8349055.1_g000001
rosa_roxburghii	Rroxscaffold_7G00162760
rosa_rugosa	Rorug06G0340500 Rorug06G0340600.1
rosa_samantha	Rh6AG452700 Rh6BG449100 Rh6CG466400 Rh6DG453100
rosa_wichuraiana	Rw6G039450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	846
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	141
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	1 cut(s)	437
AcoI	YGGCCR	1 cut(s)	654
AfaI	GTAC	3 cut(s)	112, 617, 629
AfiI	CCNNNNNNNGG	3 cut(s)	154, 286, 663
AgeI	ACCGGT	1 cut(s)	375
AgsI	TTSAA	6 cut(s)	200, 270, 331, 579, 607, 832
AluBI	AGCT	4 cut(s)	116, 151, 410, 633
AluI	AGCT	4 cut(s)	116, 151, 410, 633
Alw26I	GTCTC	2 cut(s)	371, 500
AlwI	GGATC	1 cut(s)	437
Ama87I	CYCGRG	1 cut(s)	405
AoxI	GGCC	2 cut(s)	288, 654
ApeKI	GCWGC	1 cut(s)	221
AseI	ATTAAT	1 cut(s)	704
AsiGI	ACCGGT	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	265
AspLEI	GCGC	2 cut(s)	758, 847
AspS9I	GGNCC	4 cut(s)	124, 157, 289, 740
AsuHPI	GGTGA	2 cut(s)	824, 986
AvaI	CYCGRG	1 cut(s)	405
AvaII	GGWCC	3 cut(s)	124, 157, 740
BalI	TGGCCA	1 cut(s)	656
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	2 cut(s)	283, 803
BceAI	ACGGC	1 cut(s)	836
BciVI	GTATCC	1 cut(s)	164
BclI	TGATCA	3 cut(s)	97, 793, 1018
BcoDI	GTCTC	2 cut(s)	371, 500
BfaI	CTAG	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	759
BfuI	GTATCC	1 cut(s)	164
BisI	GCNGC	1 cut(s)	222
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	617
Bme18I	GGWCC	3 cut(s)	124, 157, 740
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	4 cut(s)	124, 157, 289, 740
BmiI	GGNNCC	2 cut(s)	126, 380
BmsI	GCATC	6 cut(s)	195, 233, 345, 571, 672, 772
BplI	GAGNNNNNCTC	2 cut(s)	919, 951
Bpu1102I	GCTNAGC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	285
BsaWI	WCCGGW	1 cut(s)	375
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 286, 663
Bse118I	RCCGGY	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	796
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	7 cut(s)	67, 186, 224, 275, 562, 787, 814
BseLI	CCNNNNNNNGG	3 cut(s)	154, 286, 663
BseMI	GCAATG	1 cut(s)	796
BseMII	CTCAG	4 cut(s)	131, 168, 750, 929
BseXI	GCAGC	1 cut(s)	208
BsgI	GTGCAG	1 cut(s)	657
BshFI	GGCC	2 cut(s)	290, 656
BshTI	ACCGGT	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	2 cut(s)	376, 738
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	3 cut(s)	154, 286, 663
BsmAI	GTCTC	2 cut(s)	371, 500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	658
BsmI	GAATGC	1 cut(s)	936
BsnI	GGCC	2 cut(s)	290, 656
BsoBI	CYCGRG	1 cut(s)	405
Bsp143I	GATC	6 cut(s)	97, 442, 490, 515, 793, 1018
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	290, 656
BspCNI	CTCAG	4 cut(s)	130, 169, 751, 930
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	2 cut(s)	126, 380
BspPI	GGATC	1 cut(s)	437
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	796
BsrFI	RCCGGY	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	6 cut(s)	97, 442, 490, 515, 793, 1018
BssT1I	CCWWGG	1 cut(s)	285
Bst4CI	ACNGT	6 cut(s)	104, 110, 157, 365, 559, 649
Bst6I	CTCTTC	2 cut(s)	878, 883
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	5 cut(s)	117, 177, 591, 759, 938
BstF5I	GGATG	7 cut(s)	67, 186, 224, 275, 562, 787, 814
BstH2I	RGCGCY	1 cut(s)	759
BstHHI	GCGC	2 cut(s)	758, 847
BstKTI	GATC	6 cut(s)	100, 445, 493, 518, 796, 1021
BstMAI	GTCTC	2 cut(s)	371, 500
BstMBI	GATC	6 cut(s)	97, 442, 490, 515, 793, 1018
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 296, 333
BstV1I	GCAGC	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	290, 656
BtsCI	GGATG	7 cut(s)	67, 186, 224, 275, 562, 787, 814
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	3 cut(s)	100, 210, 555
Cac8I	GCNNGC	1 cut(s)	787
CciI	TCATGA	1 cut(s)	796
CfoI	GCGC	2 cut(s)	758, 847
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	4 cut(s)	124, 157, 289, 740
Csp6I	GTAC	3 cut(s)	111, 616, 628
CspAI	ACCGGT	1 cut(s)	375
CviAII	CATG	4 cut(s)	521, 583, 661, 797
CviJI	RGCY	9 cut(s)	36, 116, 151, 290, 327, 410, 633, 656, 985
CviKI_1	RGCY	9 cut(s)	36, 116, 151, 290, 327, 410, 633, 656, 985
CviQI	GTAC	3 cut(s)	111, 616, 628
DdeI	CTNAG	5 cut(s)	117, 177, 591, 759, 938
DpnI	GATC	6 cut(s)	99, 444, 492, 517, 795, 1020
DpnII	GATC	6 cut(s)	97, 442, 490, 515, 793, 1018
EaeI	YGGCCR	1 cut(s)	654
Eam1104I	CTCTTC	2 cut(s)	878, 883
EarI	CTCTTC	2 cut(s)	878, 883
Eco130I	CCWWGG	1 cut(s)	285
Eco47I	GGWCC	3 cut(s)	124, 157, 740
Eco88I	CYCGRG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	687
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	4 cut(s)	524, 586, 664, 800
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	4 cut(s)	520, 582, 660, 796
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	3 cut(s)	97, 793, 1018
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	7 cut(s)	74, 173, 211, 262, 549, 794, 821
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	248
FspI	TGCGCA	1 cut(s)	846
GlaI	GCGC	2 cut(s)	757, 846
GluI	GCNGC	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	759
HaeIII	GGCC	2 cut(s)	290, 656
HapII	CCGG	2 cut(s)	376, 738
HhaI	GCGC	2 cut(s)	758, 847
Hin1II	CATG	4 cut(s)	524, 586, 664, 800
Hin6I	GCGC	2 cut(s)	756, 845
HinP1I	GCGC	2 cut(s)	756, 845
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HinfI	GANTC	2 cut(s)	28, 179
HpaII	CCGG	2 cut(s)	376, 738
HphI	GGTGA	2 cut(s)	824, 986
Hpy166II	GTNNAC	2 cut(s)	964, 977
Hpy188I	TCNGA	5 cut(s)	97, 145, 178, 515, 939
Hpy188III	TCNNGA	2 cut(s)	566, 797
Hpy8I	GTNNAC	2 cut(s)	964, 977
HpyAV	CCTTC	3 cut(s)	206, 276, 809
HpyCH4III	ACNGT	6 cut(s)	104, 110, 157, 365, 559, 649
HpyCH4V	TGCA	8 cut(s)	215, 224, 464, 562, 638, 685, 722, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 296, 333
HpyF3I	CTNAG	5 cut(s)	117, 177, 591, 759, 938
Hsp92II	CATG	4 cut(s)	524, 586, 664, 800
HspAI	GCGC	2 cut(s)	756, 845
Ksp22I	TGATCA	3 cut(s)	97, 793, 1018
Kzo9I	GATC	6 cut(s)	97, 442, 490, 515, 793, 1018
LmnI	GCTCC	1 cut(s)	479
LpnPI	CCDG	8 cut(s)	107, 161, 389, 501, 579, 624, 751, 754
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	6 cut(s)	195, 233, 345, 571, 672, 772
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	3 cut(s)	104, 180, 208
MalI	GATC	6 cut(s)	99, 444, 492, 517, 795, 1020
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	6 cut(s)	97, 442, 490, 515, 793, 1018
MboII	GAAGA	5 cut(s)	37, 40, 679, 895, 900
MlsI	TGGCCA	1 cut(s)	656
MluCI	AATT	5 cut(s)	4, 243, 396, 688, 1004
MluNI	TGGCCA	1 cut(s)	656
MlyI	GAGTC	1 cut(s)	188
Mox20I	TGGCCA	1 cut(s)	656
Mph1103I	ATGCAT	1 cut(s)	687
MroXI	GAANNNNTTC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	656
MseI	TTAA	5 cut(s)	344, 395, 399, 704, 857
MslI	CAYNNNNRTG	1 cut(s)	704
Msp20I	TGGCCA	1 cut(s)	656
MspA1I	CMGCKG	1 cut(s)	633
MspI	CCGG	2 cut(s)	376, 738
Mva1269I	GAATGC	1 cut(s)	936
MwoI	GCNNNNNNNGC	3 cut(s)	221, 296, 333
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	6 cut(s)	97, 442, 490, 515, 793, 1018
NlaIII	CATG	4 cut(s)	524, 586, 664, 800
NlaIV	GGNNCC	2 cut(s)	126, 380
NmuCI	GTSAC	3 cut(s)	104, 180, 208
NsbI	TGCGCA	1 cut(s)	846
NsiI	ATGCAT	1 cut(s)	687
PacI	TTAATTAA	1 cut(s)	399
PagI	TCATGA	1 cut(s)	796
PctI	GAATGC	1 cut(s)	936
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	286
PinAI	ACCGGT	1 cut(s)	375
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	124
PshBI	ATTAAT	1 cut(s)	704
Psp5II	RGGWCCY	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	126, 380
PspPI	GGNCC	4 cut(s)	124, 157, 289, 740
PspPPI	RGGWCCY	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	633
RsaI	GTAC	3 cut(s)	112, 617, 629
RsaNI	GTAC	3 cut(s)	111, 616, 628
RseI	CAYNNNNRTG	1 cut(s)	704
SaqAI	TTAA	5 cut(s)	344, 395, 399, 704, 857
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	6 cut(s)	97, 442, 490, 515, 793, 1018
Sau96I	GGNCC	4 cut(s)	124, 157, 289, 740
ScaI	AGTACT	1 cut(s)	617
SchI	GAGTC	1 cut(s)	188
SfaNI	GCATC	6 cut(s)	195, 233, 345, 571, 672, 772
SinI	GGWCC	3 cut(s)	124, 157, 740
SmiMI	CAYNNNNRTG	1 cut(s)	704
Sse9I	AATT	5 cut(s)	4, 243, 396, 688, 1004
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	1 cut(s)	248
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	6 cut(s)	104, 110, 157, 365, 559, 649
TasI	AATT	5 cut(s)	4, 243, 396, 688, 1004
TatI	WGTACW	2 cut(s)	615, 627
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	5 cut(s)	344, 395, 399, 704, 857
Tru9I	TTAA	5 cut(s)	344, 395, 399, 704, 857
TscAI	CASTG	3 cut(s)	107, 217, 562
TseFI	GTSAC	3 cut(s)	104, 180, 208
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	3 cut(s)	104, 180, 208
TspDTI	ATGAA	3 cut(s)	17, 722, 902
TspRI	CASTG	3 cut(s)	107, 217, 562
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	3 cut(s)	124, 157, 740
VspI	ATTAAT	1 cut(s)	704
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	617
Zsp2I	ATGCAT	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.