Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016093

Physical Location & Seq

Genomic Coordinates Forward (+)

30272849 .. 30274891

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGATAGCAGTTACTCTGTCATTTCCAAAACTTCTTACGTTGAGTTACAGAAACCGACGGTTAATGGGAAACCCAGAAACAAGTTGCTTCCTTCTGATGAAGAAAGCTTCGTCAATGATTTTGACGATGCCCGTAATGGTGTTGGGGGTGAAGATGCTGATGATCTCGATTTCGATGTCGCTGATTACCCACTCGTTCATGGCAAATCATCCAATCAAGGATCTGGGATTTACGGTGCTGTTTTCAATCTCACCACTTCTATTATCGGCGCCGGGATCATGGCATTGCCCGCCACCATGAAAGTTCTCGGCTTGGTTCTAGGGTTTGTTTTGATTATCCTCATGGCTCTTTTGTCTGAGATTAGTGTTGAGCTTCTGGTTAGATTTTCTGTTCTTTACAAGTCCAAATCCTACGGCGAGGTTGTTCAATTCGCTTTGGGGAAAACCGCTAGGGTTTTGTCTGAGATTTGTATCATTGTCAACAATGGTGGCGTTCTCGTTGTTTACTTGATTATTATGGGCGATGTTATGTCTGGTTCTCTCCATCACATTGGGGTTTTGGATCAATGGTTAGGGAATGGGTTCTGGGATCACCGTAAAGTGTTGATTTTGATTGTTATGGTCATCTTCTTGGCTCCTCTCTGTGCTTTGAACAAGATTGATTCCTTGAGCGTTACATCAGCTGCTTCTGTTGCTCTTGCTGTTGTCTTTGTGGTTGTCTGTTTTGTTGTCGCCACCATCAAGCTTATCGAAGGAACTATCGACCCTCCAAGGTTGTCTCCTGACTTTGGTTCCAAACAAGCAATTTTGGACCTTCTTGTGGTCATTCCGATTATGTCAAACGCATACGTTTGTCACTTCAATGTTCAGCCGATATACAACGAGCTTGAAGGTCGATCACCTCATAAGATGAACCGAGTTGGGAGAATCACAACAGCCATTTGTGTTGTTGTCTACGCTTCAACTGCTGTATCGGGTTATCTCCTCTTCGGCAAGGACACCGAATCAGATATCTTGACCAACTTTGATCAAGATCTCGGTATCCGGTTCAGCTCTGCGGTGAATTACATTGTCAGAATCGGCTACATTCTTCATCTAGTTCTCGTCTTCCCTGTGATCCATTTCTCCTTGAGAGAAACCGTCAATACCTTACTGTTTGAAGGCTCGCCTCCTCTATCCGAAAGCAAAAAGAGATCTTTGGGACTCACTGTGGTCTTGCTGGCTCTTATTTACATTGGCTCAACGATGATACCAAACATATGGACTGCTTTCAAATTCACAGGCGCAACATCAGCTGTTTCACTTGGTTTTACATTCCCTGCTCTGATCGCATTGCGGTTAGGGAAACAGAGCAATTCGTTAAGCTTCGTGGAAAGATCAGTGTCATGGCTGATGCTAATCTTGGCCGTAGTGGTTAGCATTGTTGGAACCATTGGCAACATTTACAGCCTCGAGAGCAAATCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04727 map04727

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

489

Amino Acids

52.96

Weight (kDa)

5.93

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	76 - 481	5.3e-60	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	76 - 455	8.6e-06	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80510
fragaria_vesca	FvH4_6g29140
malus_domestica	MD17G1217500.v1.1
prunus_persica	Prupe.3G093200_v2.0.a1
pyrus_communis	pycom17g22180
rosa_chinensis	RchiOBHm_Chr2g0134331
rosa_laevigata	RLG00000019386
rosa_multiflora	Rmu_sc0014586.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110320
rosa_rugosa	Rorug02G0316100
rosa_samantha	Rh2AG368800 Rh2BG374800 Rh2CG352500 Rh2DG392100
rosa_wichuraiana	Rw2G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	954
AciI	CCGC	4 cut(s)	291, 447, 1058, 1336
AclWI	GGATC	5 cut(s)	229, 284, 570, 597, 1111
AcoI	YGGCCR	1 cut(s)	1404
AcsI	RAATTY	1 cut(s)	1274
AcyI	GRCGYC	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	788, 820
AgsI	TTSAA	8 cut(s)	247, 428, 652, 862, 890, 963, 1160, 1273
AluBI	AGCT	8 cut(s)	108, 373, 683, 745, 886, 1053, 1295, 1365
AluI	AGCT	8 cut(s)	108, 373, 683, 745, 886, 1053, 1295, 1365
Alw26I	GTCTC	1 cut(s)	783
AlwI	GGATC	5 cut(s)	229, 284, 570, 597, 1111
Ama87I	CYCGRG	1 cut(s)	1451
AoxI	GGCC	1 cut(s)	1404
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	1 cut(s)	1274
Asp700I	GAANNNNTTC	1 cut(s)	581
AspLEI	GCGC	2 cut(s)	272, 1286
AspS9I	GGNCC	1 cut(s)	811
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	5 cut(s)	161, 244, 584, 891, 1072
AvaI	CYCGRG	1 cut(s)	1451
AvaII	GGWCC	1 cut(s)	811
BaeI	ACNNNNGTAYC	2 cut(s)	954, 987
BanI	GGYRCC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	1099
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	2 cut(s)	552, 746
BceAI	ACGGC	2 cut(s)	430, 1391
BciVI	GTATCC	1 cut(s)	1052
BclI	TGATCA	1 cut(s)	1027
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	1 cut(s)	783
BfaI	CTAG	3 cut(s)	320, 450, 1097
BfoI	RGCGCY	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	1052
BglII	AGATCT	2 cut(s)	1033, 1193
BisI	GCNGC	1 cut(s)	684
BlsI	GCNGC	1 cut(s)	685
Bme1390I	CCNGG	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	811
BmeT110I	CYCGRG	1 cut(s)	1451
BmgT120I	GGNCC	1 cut(s)	811
BmiI	GGNNCC	4 cut(s)	271, 636, 793, 1429
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	3 cut(s)	118, 145, 1383
BpiI	GAAGAC	1 cut(s)	1099
BpuEI	CTTGAG	2 cut(s)	688, 1150
BpuMI	CCSGG	1 cut(s)	274
BsaBI	GATNNNNATC	3 cut(s)	470, 1032, 1397
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	770
BsaWI	WCCGGW	1 cut(s)	1044
Bsc4I	CCNNNNNNNGG	2 cut(s)	788, 820
Bse3DI	GCAATG	2 cut(s)	284, 1331
Bse8I	GATNNNNATC	3 cut(s)	470, 1032, 1397
BseDI	CCNNGG	1 cut(s)	770
BseGI	GGATG	1 cut(s)	209
BseJI	GATNNNNATC	3 cut(s)	470, 1032, 1397
BseLI	CCNNNNNNNGG	2 cut(s)	788, 820
BseMI	GCAATG	2 cut(s)	284, 1331
BseMII	CTCAG	2 cut(s)	348, 453
BseRI	GAGGAG	3 cut(s)	627, 974, 1161
BseXI	GCAGC	1 cut(s)	670
BshFI	GGCC	1 cut(s)	1406
BshNI	GGYRCC	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	1451
BsiSI	CCGG	2 cut(s)	273, 1045
BslFI	GGGAC	1 cut(s)	1215
BslI	CCNNNNNNNGG	2 cut(s)	788, 820
BsmAI	GTCTC	1 cut(s)	783
BsmFI	GGGAC	1 cut(s)	1215
BsnI	GGCC	1 cut(s)	1406
BsoBI	CYCGRG	1 cut(s)	1451
BspACI	CCGC	4 cut(s)	291, 447, 1058, 1336
BspANI	GGCC	1 cut(s)	1406
BspCNI	CTCAG	2 cut(s)	349, 454
BspLI	GGNNCC	4 cut(s)	271, 636, 793, 1429
BspPI	GGATC	5 cut(s)	229, 284, 570, 597, 1111
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	2 cut(s)	284, 1331
BssECI	CCNNGG	1 cut(s)	770
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	770
Bst4CI	ACNGT	6 cut(s)	61, 236, 596, 1141, 1155, 1210
Bst6I	CTCTTC	1 cut(s)	992
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	3 cut(s)	291, 1166, 1221
BstDEI	CTNAG	2 cut(s)	357, 462
BstF5I	GGATG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	2 cut(s)	272, 1286
BstMAI	GTCTC	1 cut(s)	783
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 692, 965, 1292, 1328, 1455
BstSCI	CCNGG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	670
BstV2I	GAAGAC	1 cut(s)	1099
BstX2I	RGATCY	3 cut(s)	221, 1033, 1193
BstXI	CCANNNNNNTGG	2 cut(s)	551, 1260
BstYI	RGATCY	3 cut(s)	221, 1033, 1193
BsuI	GTATCC	1 cut(s)	1052
BsuRI	GGCC	1 cut(s)	1406
BtgZI	GCGATG	1 cut(s)	537
BtsCI	GGATG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	1206, 1386
Cac8I	GCNNGC	3 cut(s)	291, 1166, 1221
CfoI	GCGC	2 cut(s)	272, 1286
Cfr13I	GGNCC	1 cut(s)	811
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviAII	CATG	5 cut(s)	200, 280, 298, 343, 1386
DdeI	CTNAG	2 cut(s)	357, 462
DinI	GGCGCC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	1404
Eam1104I	CTCTTC	1 cut(s)	992
EarI	CTCTTC	1 cut(s)	992
Eco130I	CCWWGG	1 cut(s)	770
Eco32I	GATATC	1 cut(s)	1012
Eco47I	GGWCC	1 cut(s)	811
Eco88I	CYCGRG	1 cut(s)	1451
EcoRV	GATATC	1 cut(s)	1012
EcoT14I	CCWWGG	1 cut(s)	770
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	5 cut(s)	203, 283, 301, 346, 1389
FaqI	GGGAC	1 cut(s)	1215
FatI	CATG	5 cut(s)	199, 279, 297, 342, 1385
FauI	CCCGC	1 cut(s)	298
FauNDI	CATATG	1 cut(s)	1259
FbaI	TGATCA	1 cut(s)	1027
FblI	GTMKAC	1 cut(s)	954
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	1 cut(s)	196
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	3 cut(s)	320, 450, 1097
GlaI	GCGC	2 cut(s)	271, 1285
GluI	GCNGC	1 cut(s)	684
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	1406
HapII	CCGG	2 cut(s)	273, 1045
HhaI	GCGC	2 cut(s)	272, 1286
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	5 cut(s)	203, 283, 301, 346, 1389
Hin6I	GCGC	2 cut(s)	270, 1284
HinP1I	GCGC	2 cut(s)	270, 1284
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	3 cut(s)	106, 743, 1363
HinfI	GANTC	5 cut(s)	662, 927, 1004, 1077, 1203
HpaII	CCGG	2 cut(s)	273, 1045
HphI	GGTGA	5 cut(s)	161, 244, 584, 891, 1072
Hpy166II	GTNNAC	3 cut(s)	481, 505, 955
Hpy188I	TCNGA	9 cut(s)	97, 358, 463, 831, 1009, 1076, 1180, 1326, 1465
Hpy188III	TCNNGA	5 cut(s)	167, 782, 1015, 1031, 1453
Hpy8I	GTNNAC	3 cut(s)	481, 505, 955
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	5 cut(s)	102, 746, 824, 884, 1154
HpyCH4III	ACNGT	6 cut(s)	61, 236, 596, 1141, 1155, 1210
HpyCH4IV	ACGT	2 cut(s)	39, 849
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 692, 965, 1292, 1328, 1455
HpyF3I	CTNAG	2 cut(s)	357, 462
HpySE526I	ACGT	2 cut(s)	39, 849
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	5 cut(s)	203, 283, 301, 346, 1389
HspAI	GCGC	2 cut(s)	270, 1284
KasI	GGCGCC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	1027
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	1 cut(s)	670
LweI	GCATC	3 cut(s)	118, 145, 1383
MaeI	CTAG	3 cut(s)	320, 450, 1097
MaeII	ACGT	2 cut(s)	39, 849
MaeIII	GTNAC	4 cut(s)	11, 45, 673, 854
MboII	GAAGA	6 cut(s)	113, 164, 619, 979, 1082, 1099
MflI	RGATCY	3 cut(s)	221, 1033, 1193
MluCI	AATT	5 cut(s)	428, 804, 1063, 1274, 1354
Mly113I	GGCGCC	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	1197
MmeI	TCCRAC	1 cut(s)	1405
MnlI	CCTC	9 cut(s)	350, 412, 648, 777, 912, 995, 1179, 1182, 1460
MroXI	GAANNNNTTC	1 cut(s)	581
MseI	TTAA	2 cut(s)	63, 1361
MslI	CAYNNNNRTG	1 cut(s)	861
MspA1I	CMGCKG	2 cut(s)	683, 1295
MspI	CCGG	2 cut(s)	273, 1045
MspR9I	CCNGG	1 cut(s)	274
MwoI	GCNNNNNNNGC	6 cut(s)	290, 692, 965, 1292, 1328, 1455
NarI	GGCGCC	1 cut(s)	270
NciI	CCSGG	1 cut(s)	274
NdeI	CATATG	1 cut(s)	1259
NlaIII	CATG	5 cut(s)	203, 283, 301, 346, 1389
NlaIV	GGNNCC	4 cut(s)	271, 636, 793, 1429
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	854
PaeR7I	CTCGAG	1 cut(s)	1451
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	4 cut(s)	662, 927, 1004, 1077
PkrI	GCNGC	1 cut(s)	685
PleI	GAGTC	1 cut(s)	1197
PluTI	GGCGCC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	1197
PspN4I	GGNNCC	4 cut(s)	271, 636, 793, 1429
PspPI	GGNCC	1 cut(s)	811
PsuI	RGATCY	3 cut(s)	221, 1033, 1193
PvuII	CAGCTG	2 cut(s)	683, 1295
RseI	CAYNNNNRTG	1 cut(s)	861
SaqAI	TTAA	2 cut(s)	63, 1361
SatI	GCNGC	1 cut(s)	684
Sau96I	GGNCC	1 cut(s)	811
SchI	GAGTC	1 cut(s)	1197
ScrFI	CCNGG	1 cut(s)	274
SfaNI	GCATC	3 cut(s)	118, 145, 1383
SfoI	GGCGCC	1 cut(s)	271
Sfr274I	CTCGAG	1 cut(s)	1451
SinI	GGWCC	1 cut(s)	811
SlaI	CTCGAG	1 cut(s)	1451
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	3 cut(s)	667, 1129, 1451
SmoI	CTYRAG	3 cut(s)	667, 1129, 1451
Sse9I	AATT	5 cut(s)	428, 804, 1063, 1274, 1354
SsiI	CCGC	4 cut(s)	291, 447, 1058, 1336
SspDI	GGCGCC	1 cut(s)	269
SspMI	CTAG	3 cut(s)	320, 450, 1097
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	770
TaaI	ACNGT	6 cut(s)	61, 236, 596, 1141, 1155, 1210
TaiI	ACGT	2 cut(s)	42, 852
TaqI	TCGA	6 cut(s)	168, 174, 750, 762, 895, 1452
TasI	AATT	5 cut(s)	428, 804, 1063, 1274, 1354
TfiI	GAWTC	4 cut(s)	662, 927, 1004, 1077
Tru1I	TTAA	2 cut(s)	63, 1361
Tru9I	TTAA	2 cut(s)	63, 1361
TscAI	CASTG	2 cut(s)	1213, 1386
TseFI	GTSAC	1 cut(s)	854
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	1 cut(s)	854
TspDTI	ATGAA	5 cut(s)	114, 188, 314, 926, 1082
TspRI	CASTG	2 cut(s)	1213, 1386
VpaK11BI	GGWCC	1 cut(s)	811
XapI	RAATTY	1 cut(s)	1274
XhoI	CTCGAG	1 cut(s)	1451
XmiI	GTMKAC	1 cut(s)	954
XmnI	GAANNNNTTC	1 cut(s)	581
XspI	CTAG	3 cut(s)	320, 450, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.