Rorug02G0316100

Amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016093
Physical Location & Seq
Reverse (-)
38495589 .. 38501506
5918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0316100.1

Sequence Viewer

Length: 864 bp
ATGCCCTTCCCTCAGGACCGCCTGGACCTCCCTCTCGAAGCCCTCATCGCCGAATCCAAGCAACAACGCCGTCACAACAGCCACGCTCACCAGCCACGAGGGCATAACGGTCATTTCGGCGGCGGAGGCTCCACCTCAGGCCCCTCTCGTCGGCCGATGAACCGCAACGCCTACAGAACGGCGCCGTATCCCACTCTGCCGGAAATGCAAGGACAGCCTGGACCCAGAAGGATTGAGCTGCCATTGGCTTTGAGCCAAGCGATGAACAGTGAGGGAAGCACCAAGCTTTATATATCTAACTTGGACTATGATGTTACCAATCGAGATATAGAGTTGCTCTTCTCTGAGGTTGGTGAATTGGAAAGGCACTCAATCCATTATGATAAAAGTGGAAGATCTAAGGGAACAGCTGAAGTTGTCTATAAGCACTATTCAGATGCTCTAGCAGCAATCGAGAGATACAACAATCAGCATCTTGATGGAAAGAAAGTGGAAATTAAGCTTGTGGGACTCAATGTTGTTTCTCCTGTTCCTCTGCTTCTGCCTCCAAATACAAATTTCATGCAAGAACATCCAACTCCCGTCTTCCAGAGGCTAGGAAGAGCTGGTTCAAGGGGATCGTTTCATGGTCATGGTGGTGTTGGACTTGAAAGAGGCTGTGGACAGGTGAGAAATGGTGGTCCGAAGGTTACTACAGAATCTCAGCAATGGAAGAATGTGACTGCAGAAAATCAGCAAAGGAAGAATGTGATTACAGAATCTGTTAAAAGGAAGAAAACATTTTATGGAGATACAACTGTGACTTTTGATGATCTGGATGCTGATTTGGAAAAATACCGCCTAAAATGTAGGCCGGTAAACTGA

Protein Analysis

287

Amino Acids

32.11

Weight (kDa)

9.43

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 96 - 164 1e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80510
fragaria_vesca FvH4_6g29140
malus_domestica MD17G1217500.v1.1
prunus_persica Prupe.3G093200_v2.0.a1
pyrus_communis pycom17g22180
rosa_chinensis RchiOBHm_Chr2g0134331
rosa_laevigata RLG00000019386
rosa_multiflora Rmu_sc0014586.1_g000002
rosa_roxburghii Rroxscaffold_2G00110320
rosa_rugosa Rorug02G0316100
rosa_samantha Rh2AG368800 Rh2BG374800 Rh2CG352500 Rh2DG392100
rosa_wichuraiana Rw2G030050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AciI CCGC 5 cut(s) 19, 120, 123, 163, 838
AclWI GGATC 1 cut(s) 625
AcoI YGGCCR 1 cut(s) 152
AcsI RAATTY 1 cut(s) 556
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 2 cut(s) 612, 650
AjnI CCWGG 2 cut(s) 21, 217
AluBI AGCT 5 cut(s) 238, 286, 410, 502, 605
AluI AGCT 5 cut(s) 238, 286, 410, 502, 605
AlwI GGATC 1 cut(s) 625
AlwNI CAGNNNCTG 1 cut(s) 761
AoxI GGCC 3 cut(s) 139, 152, 851
ApeKI GCWGC 2 cut(s) 238, 446
ApoI RAATTY 1 cut(s) 556
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 5 cut(s) 16, 25, 140, 221, 680
AsuHPI GGTGA 3 cut(s) 80, 365, 679
AvaII GGWCC 4 cut(s) 16, 25, 221, 680
AxyI CCTNAGG 2 cut(s) 12, 136
BaeI ACNNNNGTAYC 2 cut(s) 783, 816
BanI GGYRCC 1 cut(s) 181
BauI CACGAG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 577
BbvI GCAGC 2 cut(s) 225, 458
BccI CCATC 1 cut(s) 473
BceAI ACGGC 3 cut(s) 54, 169, 195
BciT130I CCWGG 2 cut(s) 23, 219
BciVI GTATCC 1 cut(s) 198
BfaI CTAG 2 cut(s) 443, 596
BfmI CTRYAG 3 cut(s) 172, 693, 723
BfoI RGCGCY 1 cut(s) 185
BfuI GTATCC 1 cut(s) 198
BglI GCCNNNNNGGC 1 cut(s) 100
BglII AGATCT 1 cut(s) 395
BisI GCNGC 3 cut(s) 121, 239, 447
BlsI GCNGC 3 cut(s) 122, 240, 448
Bme1390I CCNGG 2 cut(s) 23, 219
Bme18I GGWCC 4 cut(s) 16, 25, 221, 680
BmgT120I GGNCC 5 cut(s) 16, 25, 140, 221, 680
BmiI GGNNCC 4 cut(s) 130, 142, 183, 223
BmrFI CCNGG 2 cut(s) 23, 219
BmsI GCATC 3 cut(s) 427, 481, 808
BpiI GAAGAC 1 cut(s) 577
BsaHI GRCGYC 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 853
Bse21I CCTNAGG 2 cut(s) 12, 136
Bse3DI GCAATG 1 cut(s) 713
BseBI CCWGG 2 cut(s) 23, 219
BseGI GGATG 2 cut(s) 571, 823
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 713
BseMII CTCAG 4 cut(s) 26, 150, 336, 716
BseX3I CGGCCG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 225, 458
Bsh1285I CGRYCG 1 cut(s) 155
BshFI GGCC 3 cut(s) 141, 154, 853
BshNI GGYRCC 1 cut(s) 181
BsiEI CGRYCG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 200, 854
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 3 cut(s) 141, 154, 853
Bsp143I GATC 3 cut(s) 395, 617, 811
BspACI CCGC 5 cut(s) 19, 120, 123, 163, 838
BspANI GGCC 3 cut(s) 141, 154, 853
BspCNI CTCAG 4 cut(s) 25, 149, 337, 715
BspLI GGNNCC 4 cut(s) 130, 142, 183, 223
BspMAI CTGCAG 1 cut(s) 727
BspPI GGATC 1 cut(s) 625
BspQI GCTCTTC 2 cut(s) 344, 595
BspT107I GGYRCC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 713
BsrFI RCCGGY 1 cut(s) 853
BssAI RCCGGY 1 cut(s) 853
BssMI GATC 3 cut(s) 395, 617, 811
BssNI GRCGYC 1 cut(s) 182
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 2 cut(s) 23, 219
Bst4CI ACNGT 3 cut(s) 110, 269, 799
Bst6I CTCTTC 2 cut(s) 344, 595
BstACI GRCGYC 1 cut(s) 182
BstDEI CTNAG 5 cut(s) 12, 136, 345, 399, 702
BstF5I GGATG 2 cut(s) 571, 823
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 3 cut(s) 398, 620, 814
BstMBI GATC 3 cut(s) 395, 617, 811
BstMCI CGRYCG 1 cut(s) 155
BstMWI GCNNNNNNNGC 6 cut(s) 47, 100, 126, 205, 214, 446
BstNI CCWGG 2 cut(s) 23, 219
BstSCI CCNGG 2 cut(s) 21, 217
BstSFI CTRYAG 3 cut(s) 172, 693, 723
BstV1I GCAGC 2 cut(s) 225, 458
BstV2I GAAGAC 1 cut(s) 577
BstX2I RGATCY 1 cut(s) 395
BstYI RGATCY 1 cut(s) 395
BstZI CGGCCG 1 cut(s) 152
Bsu36I CCTNAGG 2 cut(s) 12, 136
BsuI GTATCC 1 cut(s) 198
BsuRI GGCC 3 cut(s) 141, 154, 853
BtgZI GCGATG 2 cut(s) 31, 275
BtsCI GGATG 2 cut(s) 571, 823
BtsIMutI CAGTG 1 cut(s) 274
CaiI CAGNNNCTG 1 cut(s) 761
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 853
Cfr13I GGNCC 5 cut(s) 16, 25, 140, 221, 680
CviAII CATG 3 cut(s) 562, 626, 632
DdeI CTNAG 5 cut(s) 12, 136, 345, 399, 702
DinI GGCGCC 1 cut(s) 183
DpnI GATC 3 cut(s) 397, 619, 813
DpnII GATC 3 cut(s) 395, 617, 811
EaeI YGGCCR 1 cut(s) 152
EagI CGGCCG 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 344, 595
EarI CTCTTC 2 cut(s) 344, 595
EciI GGCGGA 1 cut(s) 138
EclXI CGGCCG 1 cut(s) 152
Eco47I GGWCC 4 cut(s) 16, 25, 221, 680
Eco52I CGGCCG 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 432
Eco81I CCTNAGG 2 cut(s) 12, 136
EcoO109I RGGNCCY 1 cut(s) 140
EcoRII CCWGG 2 cut(s) 21, 217
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
FaeI CATG 3 cut(s) 565, 629, 635
FaqI GGGAC 1 cut(s) 522
FatI CATG 3 cut(s) 561, 625, 631
Fnu4HI GCNGC 3 cut(s) 121, 239, 447
FokI GGATG 2 cut(s) 558, 830
Fsp4HI GCNGC 3 cut(s) 121, 239, 447
FspBI CTAG 2 cut(s) 443, 596
GlaI GCGC 1 cut(s) 183
GluI GCNGC 3 cut(s) 121, 239, 447
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 3 cut(s) 141, 154, 853
HapII CCGG 2 cut(s) 200, 854
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 3 cut(s) 565, 629, 635
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HindIII AAGCTT 2 cut(s) 284, 500
HinfI GANTC 4 cut(s) 53, 510, 698, 758
HpaII CCGG 2 cut(s) 200, 854
HphI GGTGA 3 cut(s) 80, 365, 679
Hpy166II GTNNAC 2 cut(s) 662, 859
Hpy188I TCNGA 3 cut(s) 346, 436, 684
Hpy188III TCNNGA 7 cut(s) 14, 35, 323, 454, 476, 589, 815
Hpy8I GTNNAC 2 cut(s) 662, 859
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 3 cut(s) 16, 222, 679
HpyCH4III ACNGT 3 cut(s) 110, 269, 799
HpyCH4V TGCA 3 cut(s) 208, 565, 725
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 100, 126, 205, 214, 446
HpyF3I CTNAG 5 cut(s) 12, 136, 345, 399, 702
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 3 cut(s) 565, 629, 635
HspAI GCGC 1 cut(s) 182
KasI GGCGCC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 395, 617, 811
LguI GCTCTTC 2 cut(s) 344, 595
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 2 cut(s) 225, 458
LweI GCATC 3 cut(s) 427, 481, 808
MaeI CTAG 2 cut(s) 443, 596
MaeIII GTNAC 5 cut(s) 71, 313, 688, 718, 799
MalI GATC 3 cut(s) 397, 619, 813
MboI GATC 3 cut(s) 395, 617, 811
MboII GAAGA 7 cut(s) 331, 405, 577, 612, 724, 754, 784
MflI RGATCY 1 cut(s) 395
MluCI AATT 3 cut(s) 356, 495, 556
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 504
MmeI TCCRAC 2 cut(s) 599, 622
MseI TTAA 2 cut(s) 498, 765
MslI CAYNNNNRTG 3 cut(s) 477, 630, 636
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 2 cut(s) 200, 854
MspR9I CCNGG 2 cut(s) 23, 219
MvaI CCWGG 2 cut(s) 23, 219
MwoI GCNNNNNNNGC 6 cut(s) 47, 100, 126, 205, 214, 446
NarI GGCGCC 1 cut(s) 182
NdeII GATC 3 cut(s) 395, 617, 811
NlaIII CATG 3 cut(s) 565, 629, 635
NlaIV GGNNCC 4 cut(s) 130, 142, 183, 223
NmuCI GTSAC 3 cut(s) 71, 718, 799
PciSI GCTCTTC 2 cut(s) 344, 595
PfeI GAWTC 3 cut(s) 53, 698, 758
PkrI GCNGC 3 cut(s) 122, 240, 448
PleI GAGTC 1 cut(s) 504
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 21, 217
PspGI CCWGG 2 cut(s) 21, 217
PspN4I GGNNCC 4 cut(s) 130, 142, 183, 223
PspPI GGNCC 5 cut(s) 16, 25, 140, 221, 680
PstI CTGCAG 1 cut(s) 727
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 395
PvuII CAGCTG 1 cut(s) 410
RseI CAYNNNNRTG 3 cut(s) 477, 630, 636
SapI GCTCTTC 2 cut(s) 344, 595
SaqAI TTAA 2 cut(s) 498, 765
SatI GCNGC 3 cut(s) 121, 239, 447
Sau3AI GATC 3 cut(s) 395, 617, 811
Sau96I GGNCC 5 cut(s) 16, 25, 140, 221, 680
SchI GAGTC 1 cut(s) 504
ScrFI CCNGG 2 cut(s) 23, 219
SfaNI GCATC 3 cut(s) 427, 481, 808
SfcI CTRYAG 3 cut(s) 172, 693, 723
SfoI GGCGCC 1 cut(s) 183
SinI GGWCC 4 cut(s) 16, 25, 221, 680
SmiMI CAYNNNNRTG 3 cut(s) 477, 630, 636
Sse9I AATT 3 cut(s) 356, 495, 556
SsiI CCGC 5 cut(s) 19, 120, 123, 163, 838
SspDI GGCGCC 1 cut(s) 181
SspMI CTAG 2 cut(s) 443, 596
StyD4I CCNGG 2 cut(s) 21, 217
TaaI ACNGT 3 cut(s) 110, 269, 799
TaqI TCGA 3 cut(s) 36, 322, 453
TasI AATT 3 cut(s) 356, 495, 556
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 3 cut(s) 53, 698, 758
Tru1I TTAA 2 cut(s) 498, 765
Tru9I TTAA 2 cut(s) 498, 765
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 3 cut(s) 71, 718, 799
TseI GCWGC 2 cut(s) 238, 446
Tsp45I GTSAC 3 cut(s) 71, 718, 799
TspDTI ATGAA 4 cut(s) 173, 278, 550, 614
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 4 cut(s) 16, 25, 221, 680
XapI RAATTY 1 cut(s) 556
XspI CTAG 2 cut(s) 443, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.