MD17G1217500.v1.1

Amino acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
26438513 .. 26439997
1485 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1217500.v1.1.491

Sequence Viewer

Length: 1485 bp
ATGGATAGCAACTATTCAGCTATCCCTAAGAAGTCGTACGTGGAATTGCAATCGCAGTATGATTCTGAAAACCCAGAAAATCTTTCAAAATCCCATTCCAAATTATCGGATTTTGATGAGGAAAGCTTTCTAGATTCCAAGAATTTGAATGGGAATGATGGCGGTGATGATTTCGATGATAATCTTGATTTCGATATTGGTAGTTATCCTTTAATTGTTGAGGGGTCTAATAATGGGTCTGGAATCTCCGGGGCGGTGTTTAATCTCACGACATCGATCATTGGGGCTGGGATTATGGCTTTACCTGCTACCATGAAGGTTCTTGGATTGGTTTGGGGGTTTGTTTTGATAATTTTGATGGGTATTTTGTCAGAAATTAGTGTTGAATTGTTGGTGAGGTTTTCGGTTTTGTGTAAGGCATCGTCTTATGGGGAGGTTGTTCAATGTGCACTGGGTAGGCCCTGGAGGATTCTGTCGGAGATCTGCATAATTATCAATAATGCAGGGGTGTTGGTGGTGTATTTGATAATTATGGGTGATGTTATGTCTGGTTCACTCCATCATATTGGGGTTTTCGATCAATGGTTAGGACATGGGGTTTGGGATCATCGAATGCTTCTGATTTTTGCTGTGGTGGTGGTTTGTCTGGCACCACTTTGCGCCTTGGAGAAGATTGACTCCTTGAGCTTGACTTCAGCTGCTTCGGTAGCTCTTGCAGTTGTGTTTGTTGTAGTTGCTTGCGCTATCGCGTTTATTAAGCTTGTTGAAGGGAAAATTGATTCTCCAAGGATGTCACCGGATTTTGGGTCGACCAAGGCAATCTTGGATTTGCTTGTGGTGATTCCTATCATGACCAATGCTTATGTTTGTCACTTTAATGTTCAACCTATATACAATGAGCTTGAAGGCCGGTCTCCTCAAAAGATGAATCGGGTTGGAAGGATCACAACTGTTCTTTGCATTGTGATCTATTCTTTGACAGCCATTGCAGGATATCTACTCTTTGGGAAAGATACAGAGTCTGATATTCTGACCAACTTTGATAAAGACCTTGGAATCCGTTTCAGCTCAGCACTGAATTATATTGTCAGGGTTGGGTACATTTTCCATTTGCTTCTTGTTTTCCCTGTTGTCCATTTTTCCTTGAGGCAAACAGTGGACGCCTTGGTGTTTGAGGGATCACCTCCTCTCATGGAGAGTAGGAAGAGATGTTTTGTATTGACACTGGTTCTGCTGGGGCTTATTTATTTAGGATCTACCGTGATTCCCAACATTTGGACAGCATTTAAGTTTACAGGGGCAACAACTGCCGTGTCATTGGGGTTTATATTTCCTTCCCTCATTGCTTTAAAGTTAGGTCGGAAAGGGGAAGGCTTGAGCGTTGTAGAGAAGACCTTGTCATGGTTCATGTTGGTAATGGCAGTAGCAGTCAGCATTGTTGGAATTATTGGCAATATTTATAGTCTCAGAAGCAAATCTGAATGA

Protein Analysis

495

Amino Acids

53.79

Weight (kDa)

5.46

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 82 - 486 3.1e-59 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 82 - 459 1.1e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80510
fragaria_vesca FvH4_6g29140
malus_domestica MD17G1217500.v1.1
prunus_persica Prupe.3G093200_v2.0.a1
pyrus_communis pycom17g22180
rosa_chinensis RchiOBHm_Chr2g0134331
rosa_laevigata RLG00000019386
rosa_multiflora Rmu_sc0014586.1_g000002
rosa_roxburghii Rroxscaffold_2G00110320
rosa_rugosa Rorug02G0316100
rosa_samantha Rh2AG368800 Rh2BG374800 Rh2CG352500 Rh2DG392100
rosa_wichuraiana Rw2G030050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 649
AccB7I CCANNNNNTGG 1 cut(s) 1275
AccI GTMKAC 1 cut(s) 809
AccII CGCG 1 cut(s) 749
AciI CCGC 2 cut(s) 162, 254
AclWI GGATC 4 cut(s) 612, 950, 1186, 1261
AcsI RAATTY 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 678
AcyI GRCGYC 1 cut(s) 1161
AfaI GTAC 2 cut(s) 38, 1100
AfiI CCNNNNNNNGG 3 cut(s) 803, 1275, 1401
AgsI TTSAA 7 cut(s) 87, 148, 386, 443, 767, 884, 905
AjnI CCWGG 1 cut(s) 461
AluBI AGCT 8 cut(s) 20, 126, 687, 698, 710, 760, 901, 1068
AluI AGCT 8 cut(s) 20, 126, 687, 698, 710, 760, 901, 1068
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 2 cut(s) 918, 1469
Alw44I GTGCAC 1 cut(s) 447
AlwI GGATC 4 cut(s) 612, 950, 1186, 1261
AlwNI CAGNNNCTG 1 cut(s) 1022
AoxI GGCC 2 cut(s) 458, 907
ApaLI GTGCAC 1 cut(s) 447
ApeKI GCWGC 1 cut(s) 698
ApoI RAATTY 1 cut(s) 142
ArsI GACNNNNNNTTYG 2 cut(s) 582, 614
Asp700I GAANNNNTTC 1 cut(s) 126
AspLEI GCGC 2 cut(s) 662, 743
AspS9I GGNCC 1 cut(s) 459
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 6 cut(s) 176, 406, 548, 786, 850, 1173
BaeGI GKGCMC 1 cut(s) 451
BanI GGYRCC 1 cut(s) 649
BbsI GAAGAC 1 cut(s) 1397
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 1 cut(s) 685
BccI CCATC 3 cut(s) 152, 352, 567
BceAI ACGGC 1 cut(s) 1295
BciT130I CCWGG 1 cut(s) 463
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 918, 1469
BfaI CTAG 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 313
BglII AGATCT 1 cut(s) 480
BisI GCNGC 1 cut(s) 699
BlpI GCTNAGC 1 cut(s) 1069
BlsI GCNGC 1 cut(s) 700
Bme1390I CCNGG 2 cut(s) 250, 463
BmgT120I GGNCC 1 cut(s) 459
BmiI GGNNCC 1 cut(s) 651
BmrFI CCNGG 2 cut(s) 250, 463
BmrI ACTGGG 1 cut(s) 461
BmsI GCATC 1 cut(s) 428
BmuI ACTGGG 1 cut(s) 461
BpiI GAAGAC 1 cut(s) 1397
BpmI CTGGAG 1 cut(s) 484
Bpu1102I GCTNAGC 1 cut(s) 1069
BpuEI CTTGAG 3 cut(s) 703, 1165, 1396
BpuMI CCSGG 1 cut(s) 250
Bsa29I ATCGAT 1 cut(s) 275
BsaAI YACGTR 1 cut(s) 40
BsaBI GATNNNNATC 2 cut(s) 180, 845
BsaHI GRCGYC 1 cut(s) 1161
BsaI GGTCTC 1 cut(s) 918
BsaJI CCNNGG 7 cut(s) 249, 461, 663, 785, 813, 1051, 1164
BsaWI WCCGGW 1 cut(s) 796
Bsc4I CCNNNNNNNGG 3 cut(s) 803, 1275, 1401
Bse118I RCCGGY 1 cut(s) 909
Bse1I ACTGG 2 cut(s) 456, 1230
Bse3DI GCAATG 2 cut(s) 984, 1341
Bse8I GATNNNNATC 2 cut(s) 180, 845
BseBI CCWGG 1 cut(s) 463
BseCI ATCGAT 1 cut(s) 275
BseDI CCNNGG 7 cut(s) 249, 461, 663, 785, 813, 1051, 1164
BseGI GGATG 1 cut(s) 795
BseJI GATNNNNATC 2 cut(s) 180, 845
BseLI CCNNNNNNNGG 3 cut(s) 803, 1275, 1401
BseMI GCAATG 2 cut(s) 984, 1341
BseMII CTCAG 2 cut(s) 1083, 1480
BseNI ACTGG 2 cut(s) 456, 1230
BseRI GAGGAG 2 cut(s) 906, 1176
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 1 cut(s) 685
BseYI CCCAGC 2 cut(s) 287, 1234
Bsh1236I CGCG 1 cut(s) 749
BshFI GGCC 2 cut(s) 460, 909
BshNI GGYRCC 1 cut(s) 649
BshVI ATCGAT 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 451
BsiSI CCGG 3 cut(s) 249, 797, 910
BsiWI CGTACG 1 cut(s) 36
BslI CCNNNNNNNGG 3 cut(s) 803, 1275, 1401
BsmAI GTCTC 2 cut(s) 918, 1469
BsmI GAATGC 1 cut(s) 618
BsnI GGCC 2 cut(s) 460, 909
Bso31I GGTCTC 1 cut(s) 918
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 8 cut(s) 276, 480, 577, 604, 942, 966, 1178, 1253
Bsp1720I GCTNAGC 1 cut(s) 1069
BspACI CCGC 2 cut(s) 162, 254
BspANI GGCC 2 cut(s) 460, 909
BspCNI CTCAG 2 cut(s) 1082, 1479
BspDI ATCGAT 1 cut(s) 275
BspFNI CGCG 1 cut(s) 749
BspHI TCATGA 1 cut(s) 849
BspLI GGNNCC 1 cut(s) 651
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 4 cut(s) 612, 950, 1186, 1261
BspT107I GGYRCC 1 cut(s) 649
BspTNI GGTCTC 1 cut(s) 918
BsrDI GCAATG 2 cut(s) 984, 1341
BsrFI RCCGGY 1 cut(s) 909
BsrI ACTGG 2 cut(s) 456, 1230
BssAI RCCGGY 1 cut(s) 909
BssECI CCNNGG 7 cut(s) 249, 461, 663, 785, 813, 1051, 1164
BssMI GATC 8 cut(s) 276, 480, 577, 604, 942, 966, 1178, 1253
BssNI GRCGYC 1 cut(s) 1161
BssT1I CCWWGG 5 cut(s) 663, 785, 813, 1051, 1164
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 3 cut(s) 952, 1156, 1261
Bst6I CTCTTC 1 cut(s) 1199
BstACI GRCGYC 1 cut(s) 1161
BstAPI GCANNNNNTGC 1 cut(s) 1307
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 739
BstDEI CTNAG 3 cut(s) 27, 1069, 1466
BstF5I GGATG 1 cut(s) 795
BstFNI CGCG 1 cut(s) 749
BstHHI GCGC 2 cut(s) 662, 743
BstKTI GATC 8 cut(s) 279, 483, 580, 607, 945, 969, 1181, 1256
BstMAI GTCTC 2 cut(s) 918, 1469
BstMBI GATC 8 cut(s) 276, 480, 577, 604, 942, 966, 1178, 1253
BstMWI GCNNNNNNNGC 3 cut(s) 305, 707, 1307
BstNI CCWGG 1 cut(s) 463
BstSCI CCNGG 2 cut(s) 248, 461
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 1 cut(s) 749
BstV1I GCAGC 1 cut(s) 685
BstV2I GAAGAC 1 cut(s) 1397
BstX2I RGATCY 2 cut(s) 480, 1253
BstXI CCANNNNNNTGG 1 cut(s) 566
BstYI RGATCY 2 cut(s) 480, 1253
Bsu15I ATCGAT 1 cut(s) 275
BsuRI GGCC 2 cut(s) 460, 909
BsuTUI ATCGAT 1 cut(s) 275
BtsCI GGATG 1 cut(s) 795
BtsIMutI CAGTG 4 cut(s) 449, 1073, 1161, 1223
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 739
CaiI CAGNNNCTG 1 cut(s) 1022
CciI TCATGA 1 cut(s) 849
CfoI GCGC 2 cut(s) 662, 743
Cfr10I RCCGGY 1 cut(s) 909
Cfr13I GGNCC 1 cut(s) 459
ClaI ATCGAT 1 cut(s) 275
CseI GACGC 1 cut(s) 1169
Csp6I GTAC 2 cut(s) 37, 1099
CviAII CATG 6 cut(s) 313, 593, 850, 1192, 1401, 1408
CviQI GTAC 2 cut(s) 37, 1099
DdeI CTNAG 3 cut(s) 27, 1069, 1466
DpnI GATC 8 cut(s) 278, 482, 579, 606, 944, 968, 1180, 1255
DpnII GATC 8 cut(s) 276, 480, 577, 604, 942, 966, 1178, 1253
DraI TTTAAA 1 cut(s) 1350
Eam1104I CTCTTC 1 cut(s) 1199
EarI CTCTTC 1 cut(s) 1199
Eco130I CCWWGG 5 cut(s) 663, 785, 813, 1051, 1164
Eco31I GGTCTC 1 cut(s) 918
Eco32I GATATC 1 cut(s) 995
Eco57I CTGAAG 1 cut(s) 678
EcoO109I RGGNCCY 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 461
EcoRV GATATC 1 cut(s) 995
EcoT14I CCWWGG 5 cut(s) 663, 785, 813, 1051, 1164
ErhI CCWWGG 5 cut(s) 663, 785, 813, 1051, 1164
FaeI CATG 6 cut(s) 316, 596, 853, 1195, 1404, 1411
FalI AAGNNNNNCTT 2 cut(s) 806, 838
FatI CATG 6 cut(s) 312, 592, 849, 1191, 1400, 1407
FblI GTMKAC 1 cut(s) 809
Fnu4HI GCNGC 1 cut(s) 699
FokI GGATG 1 cut(s) 802
Fsp4HI GCNGC 1 cut(s) 699
FspBI CTAG 1 cut(s) 131
GlaI GCGC 2 cut(s) 661, 742
GluI GCNGC 1 cut(s) 699
GsaI CCCAGC 2 cut(s) 291, 1238
GsuI CTGGAG 1 cut(s) 484
HaeIII GGCC 2 cut(s) 460, 909
HapII CCGG 3 cut(s) 249, 797, 910
HgaI GACGC 1 cut(s) 1169
HhaI GCGC 2 cut(s) 662, 743
Hin1I GRCGYC 1 cut(s) 1161
Hin1II CATG 6 cut(s) 316, 596, 853, 1195, 1404, 1411
Hin6I GCGC 2 cut(s) 660, 741
HinP1I GCGC 2 cut(s) 660, 741
HincII GTYRAC 1 cut(s) 810
HindII GTYRAC 1 cut(s) 810
HindIII AAGCTT 2 cut(s) 124, 758
HpaII CCGG 3 cut(s) 249, 797, 910
HphI GGTGA 6 cut(s) 176, 406, 548, 786, 850, 1173
Hpy166II GTNNAC 5 cut(s) 449, 554, 810, 1159, 1293
Hpy188III TCNNGA 5 cut(s) 131, 185, 240, 268, 850
Hpy8I GTNNAC 5 cut(s) 449, 554, 810, 1159, 1293
HpyAV CCTTC 6 cut(s) 310, 761, 899, 933, 1344, 1364
HpyCH4III ACNGT 3 cut(s) 952, 1156, 1261
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 7 cut(s) 49, 449, 486, 503, 716, 960, 989
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 707, 1307
HpyF3I CTNAG 3 cut(s) 27, 1069, 1466
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 1161
Hsp92II CATG 6 cut(s) 316, 596, 853, 1195, 1404, 1411
HspAI GCGC 2 cut(s) 660, 741
Kzo9I GATC 8 cut(s) 276, 480, 577, 604, 942, 966, 1178, 1253
Lsp1109I GCAGC 1 cut(s) 685
LweI GCATC 1 cut(s) 428
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 792, 869
MalI GATC 8 cut(s) 278, 482, 579, 606, 944, 968, 1180, 1255
MboI GATC 8 cut(s) 276, 480, 577, 604, 942, 966, 1178, 1253
MboII GAAGA 3 cut(s) 682, 1216, 1402
MflI RGATCY 2 cut(s) 480, 1253
MhlI GDGCHC 1 cut(s) 451
MlyI GAGTC 2 cut(s) 671, 1028
MmeI TCCRAC 4 cut(s) 456, 916, 1340, 1420
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 6 cut(s) 212, 261, 756, 876, 1287, 1349
MslI CAYNNNNRTG 1 cut(s) 876
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 3 cut(s) 249, 797, 910
MspR9I CCNGG 2 cut(s) 250, 463
Mva1269I GAATGC 1 cut(s) 618
MvaI CCWGG 1 cut(s) 463
MvnI CGCG 1 cut(s) 749
MwoI GCNNNNNNNGC 3 cut(s) 305, 707, 1307
NciI CCSGG 1 cut(s) 250
NdeII GATC 8 cut(s) 276, 480, 577, 604, 942, 966, 1178, 1253
NlaIII CATG 6 cut(s) 316, 596, 853, 1195, 1404, 1411
NlaIV GGNNCC 1 cut(s) 651
NmuCI GTSAC 2 cut(s) 792, 869
PagI TCATGA 1 cut(s) 849
PctI GAATGC 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 9 cut(s) 62, 134, 243, 469, 779, 841, 928, 1056, 1264
Pfl23II CGTACG 1 cut(s) 36
PflFI GACNNNGTC 1 cut(s) 1396
PflMI CCANNNNNTGG 1 cut(s) 1275
PkrI GCNGC 1 cut(s) 700
PleI GAGTC 2 cut(s) 671, 1027
PpsI GAGTC 2 cut(s) 671, 1027
Ppu21I YACGTR 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 461
PspFI CCCAGC 2 cut(s) 287, 1234
PspGI CCWGG 1 cut(s) 461
PspLI CGTACG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 651
PspPI GGNCC 1 cut(s) 459
PstNI CAGNNNCTG 1 cut(s) 1022
PsuI RGATCY 2 cut(s) 480, 1253
PsyI GACNNNGTC 1 cut(s) 1396
PvuII CAGCTG 1 cut(s) 698
RsaI GTAC 2 cut(s) 38, 1100
RsaNI GTAC 2 cut(s) 37, 1099
RseI CAYNNNNRTG 1 cut(s) 876
SalI GTCGAC 1 cut(s) 808
SaqAI TTAA 6 cut(s) 212, 261, 756, 876, 1287, 1349
SatI GCNGC 1 cut(s) 699
Sau3AI GATC 8 cut(s) 276, 480, 577, 604, 942, 966, 1178, 1253
Sau96I GGNCC 1 cut(s) 459
SchI GAGTC 2 cut(s) 671, 1028
ScrFI CCNGG 2 cut(s) 250, 463
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 876
SmlI CTYRAG 3 cut(s) 682, 1144, 1375
SmoI CTYRAG 3 cut(s) 682, 1144, 1375
SsiI CCGC 2 cut(s) 162, 254
SspI AATATT 1 cut(s) 1456
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 248, 461
StyI CCWWGG 5 cut(s) 663, 785, 813, 1051, 1164
TaaI ACNGT 3 cut(s) 952, 1156, 1261
TaiI ACGT 1 cut(s) 42
TaqI TCGA 6 cut(s) 174, 192, 275, 576, 610, 809
TfiI GAWTC 9 cut(s) 62, 134, 243, 469, 779, 841, 928, 1056, 1264
Tru1I TTAA 6 cut(s) 212, 261, 756, 876, 1287, 1349
Tru9I TTAA 6 cut(s) 212, 261, 756, 876, 1287, 1349
TscAI CASTG 4 cut(s) 456, 1080, 1161, 1230
TseFI GTSAC 2 cut(s) 792, 869
TseI GCWGC 1 cut(s) 698
Tsp45I GTSAC 2 cut(s) 792, 869
TspDTI ATGAA 3 cut(s) 329, 941, 1396
TspGWI ACGGA 1 cut(s) 1049
TspRI CASTG 4 cut(s) 456, 1080, 1161, 1230
Tth111I GACNNNGTC 1 cut(s) 1396
Van91I CCANNNNNTGG 1 cut(s) 1275
VneI GTGCAC 1 cut(s) 447
XapI RAATTY 1 cut(s) 142
XbaI TCTAGA 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 820
XmiI GTMKAC 1 cut(s) 809
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.