Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016093

Physical Location & Seq

Genomic Coordinates Forward (+)

6985302 .. 6987785

Gene Structure 2484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G093200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGGATAGTAACTATTCAGCTATCCCCAAGAACTCACATTTAGAATTGCAATCACGATATGATTCTGAAAACCCAGCAGTTCCTCCCAAATCCCATGTCAAATTGTCCTCTTTTGATGAGGAAAGCTTTCTAGATTCGAAGCATTTAAATGGGCAGGATGGTGGTGATGACTTTGATGATAATCTTGATTTTGATATTGCTAGTTATCCCCTTATTGTTGAGGGGTCTAAACAAGGGTCTGGAATCTCTGGGGCCGTGTTTAATCTCACGACTTCTATTATTGGGGCTGGGATTATGGCTTTGCCTGCTACCATGAAAGTTCTTGGCTTGGTTTGGGGTTCTATCTTGATAATTTTGATGGGTATTTTGTCAGAAATTAGTGTTGAATTGTTGGTTAGATTTTCAGTTTCGTGTAAGGCCTCATCGTATGGGGAGGTTGTCCAATGTGCTTTGGGGAGACCGGCAAGGATCTTATCGGAGATTTGCATAATTGTCAACAATGCAGGCGTGTTGGTGGTGTATTTGATAATTATGGGTGATGTTATGTCTGGTTCACTTCATCATATGGGGGTTTTTGATCAATGGTTGGGGCATGGGGTCTGGGATCACAGAATGCTTTTGATTTTTGCTACGGTGGTGGTTTTTCTAGCACCACTTTGTGCCTTGGATAAGATTGATTCCTTGAGCTTGACTTCAGCTGCATCTGTAGCTCTTGCAGTTGTGTTTGTTGTGGTTGCTTGTGGCATTGCGTTTATTAAGCTTGTTGAAGGGAAAATCGAGTCTCCAAGGATGACACCAGATTTCGGGTCAAAAAAGGCGATCTTGGATTTGCTTGTGGTGATTCCTATCATGACCAATGCTTATGTTTGCCACTTTAATGTTCAACCTATATATAATGAGCTTGAAGGGCCGTCTCCTCAGAAGATGAATCGGGTTGGAAGGATAACAACTGTTCTTTGCGTTGTGATCTATTCTTTGACAGCCATAGCGGGGTATCTACTCTTTGGGAAAGATACAGAATCTGATATTCTGACCAACTTTGATAAGGACCTTGGAATCCGTTTCAGCTCAGTGCTAAACTATATTGTCAGGGTTGGGTACATTTTTCATTTGCTTCTTGTTTTCCCCGTTGTTCATTTTTCCTTGAGGCAAACTGTGGATGCCTTGGTGTTTGAGGGATCGCCTCCACTCACAGAGAGTAGGAAGAGATGTTTCATATTGACACTGGTCCTGTTGGGACTTATTTATTTAGGATCTACCGTGATTCCCAACATTTGGACGGCTTTTAAATTTACAGGGGCAACAACAGCTGTGTCGTTGGGGTTTATATTTCCTTCCCTTATCGCATTAAAGTTAGGCCGGAAAGGGGACGGTTTGAGCCTTGTAGAGAAGACTTTGTCATGGTTGATGTTAATAATGGCAATAGCCGTCAGCATTGTTGGAATAATTGGCAATGTTTATAGTCTCAGAAGCAAATCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04727 map04727

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

495

Amino Acids

53.59

Weight (kDa)

5.95

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80510
fragaria_vesca	FvH4_6g29140
malus_domestica	MD17G1217500.v1.1
prunus_persica	Prupe.3G093200_v2.0.a1
pyrus_communis	pycom17g22180
rosa_chinensis	RchiOBHm_Chr2g0134331
rosa_laevigata	RLG00000019386
rosa_multiflora	Rmu_sc0014586.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110320
rosa_rugosa	Rorug02G0316100
rosa_samantha	Rh2AG368800 Rh2BG374800 Rh2CG352500 Rh2DG392100
rosa_wichuraiana	Rw2G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1275
AciI	CCGC	1 cut(s)	989
AclWI	GGATC	4 cut(s)	476, 612, 1186, 1261
AcsI	RAATTY	1 cut(s)	1289
AcuI	CTGAAG	1 cut(s)	678
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	1 cut(s)	1100
AfiI	CCNNNNNNNGG	4 cut(s)	803, 990, 1275, 1366
AgsI	TTSAA	4 cut(s)	386, 767, 884, 905
AluBI	AGCT	9 cut(s)	20, 126, 687, 698, 710, 760, 901, 1068, 1310
AluI	AGCT	9 cut(s)	20, 126, 687, 698, 710, 760, 901, 1068, 1310
Alw26I	GTCTC	4 cut(s)	451, 786, 918, 1469
AlwI	GGATC	4 cut(s)	476, 612, 1186, 1261
AlwNI	CAGNNNCTG	1 cut(s)	1022
AoxI	GGCC	4 cut(s)	252, 417, 908, 1357
ApeKI	GCWGC	1 cut(s)	698
ApoI	RAATTY	1 cut(s)	1289
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
Asp700I	GAANNNNTTC	1 cut(s)	126
AspS9I	GGNCC	4 cut(s)	252, 908, 1048, 1228
AsuHPI	GGTGA	3 cut(s)	176, 548, 850
AsuII	TTCGAA	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	1048, 1228
BbsI	GAAGAC	1 cut(s)	1397
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	2 cut(s)	152, 352
BceAI	ACGGC	4 cut(s)	239, 895, 1296, 1412
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	4 cut(s)	451, 786, 918, 1469
BfaI	CTAG	3 cut(s)	131, 201, 647
BfmI	CTRYAG	1 cut(s)	705
BisI	GCNGC	1 cut(s)	699
BlsI	GCNGC	1 cut(s)	700
Bme18I	GGWCC	2 cut(s)	1048, 1228
BmgT120I	GGNCC	4 cut(s)	252, 908, 1048, 1228
BmiI	GGNNCC	1 cut(s)	253
BmsI	GCATC	2 cut(s)	710, 1150
BoxI	GACNNNNGTC	1 cut(s)	1226
BpiI	GAAGAC	1 cut(s)	1397
Bpu14I	TTCGAA	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	703, 1165
BsaBI	GATNNNNATC	2 cut(s)	180, 845
BsaI	GGTCTC	1 cut(s)	451
BsaJI	CCNNGG	4 cut(s)	663, 785, 1051, 1164
Bsc4I	CCNNNNNNNGG	4 cut(s)	803, 990, 1275, 1366
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	1230
Bse3DI	GCAATG	2 cut(s)	744, 1459
Bse8I	GATNNNNATC	2 cut(s)	180, 845
BseDI	CCNNGG	4 cut(s)	663, 785, 1051, 1164
BseGI	GGATG	3 cut(s)	163, 795, 1165
BseJI	GATNNNNATC	2 cut(s)	180, 845
BseLI	CCNNNNNNNGG	4 cut(s)	803, 990, 1275, 1366
BseMI	GCAATG	2 cut(s)	744, 1459
BseMII	CTCAG	3 cut(s)	932, 1083, 1480
BseNI	ACTGG	1 cut(s)	1230
BseRI	GAGGAG	1 cut(s)	906
BseXI	GCAGC	1 cut(s)	685
BseYI	CCCAGC	2 cut(s)	73, 287
BshFI	GGCC	4 cut(s)	254, 419, 910, 1359
BsiSI	CCGG	2 cut(s)	461, 1360
BslFI	GGGAC	2 cut(s)	1251, 1382
BslI	CCNNNNNNNGG	4 cut(s)	803, 990, 1275, 1366
BsmAI	GTCTC	4 cut(s)	451, 786, 918, 1469
BsmBI	CGTCTC	1 cut(s)	918
BsmFI	GGGAC	2 cut(s)	1251, 1382
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	4 cut(s)	254, 419, 910, 1359
Bso31I	GGTCTC	1 cut(s)	451
Bsp119I	TTCGAA	1 cut(s)	137
Bsp143I	GATC	7 cut(s)	468, 577, 604, 819, 966, 1178, 1253
BspACI	CCGC	1 cut(s)	989
BspANI	GGCC	4 cut(s)	254, 419, 910, 1359
BspCNI	CTCAG	3 cut(s)	931, 1082, 1479
BspHI	TCATGA	1 cut(s)	849
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	4 cut(s)	476, 612, 1186, 1261
BspT104I	TTCGAA	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	451
BsrDI	GCAATG	2 cut(s)	744, 1459
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	1230
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	4 cut(s)	663, 785, 1051, 1164
BssMI	GATC	7 cut(s)	468, 577, 604, 819, 966, 1178, 1253
BssT1I	CCWWGG	4 cut(s)	663, 785, 1051, 1164
Bst4CI	ACNGT	5 cut(s)	634, 952, 1156, 1261, 1373
Bst6I	CTCTTC	1 cut(s)	1199
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	306, 505
BstDEI	CTNAG	3 cut(s)	918, 1069, 1466
BstF5I	GGATG	3 cut(s)	163, 795, 1165
BstKTI	GATC	7 cut(s)	471, 580, 607, 822, 969, 1181, 1256
BstMAI	GTCTC	4 cut(s)	451, 786, 918, 1469
BstMBI	GATC	7 cut(s)	468, 577, 604, 819, 966, 1178, 1253
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 707, 907, 1307
BstPAI	GACNNNNGTC	1 cut(s)	1226
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	1 cut(s)	685
BstV2I	GAAGAC	1 cut(s)	1397
BstX2I	RGATCY	2 cut(s)	468, 1253
BstYI	RGATCY	2 cut(s)	468, 1253
BsuRI	GGCC	4 cut(s)	254, 419, 910, 1359
BtsCI	GGATG	3 cut(s)	163, 795, 1165
BtsIMutI	CAGTG	2 cut(s)	1077, 1223
Cac8I	GCNNGC	2 cut(s)	306, 505
CaiI	CAGNNNCTG	1 cut(s)	1022
CciI	TCATGA	1 cut(s)	849
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	4 cut(s)	252, 908, 1048, 1228
Csp6I	GTAC	1 cut(s)	1099
CviAII	CATG	5 cut(s)	95, 313, 593, 850, 1401
CviQI	GTAC	1 cut(s)	1099
DdeI	CTNAG	3 cut(s)	918, 1069, 1466
DpnI	GATC	7 cut(s)	470, 579, 606, 821, 968, 1180, 1255
DpnII	GATC	7 cut(s)	468, 577, 604, 819, 966, 1178, 1253
DraI	TTTAAA	2 cut(s)	147, 1288
DraIII	CACNNNGTG	1 cut(s)	659
Eam1104I	CTCTTC	1 cut(s)	1199
EarI	CTCTTC	1 cut(s)	1199
Eco130I	CCWWGG	4 cut(s)	663, 785, 1051, 1164
Eco147I	AGGCCT	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	451
Eco47I	GGWCC	2 cut(s)	1048, 1228
Eco57I	CTGAAG	1 cut(s)	678
EcoO109I	RGGNCCY	1 cut(s)	1048
EcoT14I	CCWWGG	4 cut(s)	663, 785, 1051, 1164
ErhI	CCWWGG	4 cut(s)	663, 785, 1051, 1164
Esp3I	CGTCTC	1 cut(s)	918
FaeI	CATG	5 cut(s)	98, 316, 596, 853, 1404
FalI	AAGNNNNNCTT	2 cut(s)	806, 838
FaqI	GGGAC	2 cut(s)	1251, 1382
FatI	CATG	5 cut(s)	94, 312, 592, 849, 1400
FauI	CCCGC	1 cut(s)	982
FauNDI	CATATG	1 cut(s)	564
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	1 cut(s)	699
FokI	GGATG	3 cut(s)	170, 802, 1172
Fsp4HI	GCNGC	1 cut(s)	699
FspBI	CTAG	3 cut(s)	131, 201, 647
GluI	GCNGC	1 cut(s)	699
GsaI	CCCAGC	2 cut(s)	77, 291
HaeIII	GGCC	4 cut(s)	254, 419, 910, 1359
HapII	CCGG	2 cut(s)	461, 1360
Hin1II	CATG	5 cut(s)	98, 316, 596, 853, 1404
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	2 cut(s)	124, 758
HpaII	CCGG	2 cut(s)	461, 1360
HphI	GGTGA	3 cut(s)	176, 548, 850
Hpy166II	GTNNAC	2 cut(s)	496, 554
Hpy188I	TCNGA	8 cut(s)	67, 373, 478, 921, 1024, 1032, 1469, 1480
Hpy188III	TCNNGA	7 cut(s)	54, 131, 185, 240, 268, 346, 850
Hpy8I	GTNNAC	2 cut(s)	496, 554
HpyAV	CCTTC	4 cut(s)	761, 899, 933, 1344
HpyCH4III	ACNGT	5 cut(s)	634, 952, 1156, 1261, 1373
HpyCH4V	TGCA	5 cut(s)	49, 486, 503, 701, 716
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 707, 907, 1307
HpyF3I	CTNAG	3 cut(s)	918, 1069, 1466
Hsp92II	CATG	5 cut(s)	98, 316, 596, 853, 1404
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	7 cut(s)	468, 577, 604, 819, 966, 1178, 1253
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	2 cut(s)	710, 1150
MaeI	CTAG	3 cut(s)	131, 201, 647
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	7 cut(s)	470, 579, 606, 821, 968, 1180, 1255
MboI	GATC	7 cut(s)	468, 577, 604, 819, 966, 1178, 1253
MboII	GAAGA	3 cut(s)	934, 1216, 1402
MflI	RGATCY	2 cut(s)	468, 1253
MluCI	AATT	9 cut(s)	44, 101, 351, 375, 386, 489, 528, 1289, 1446
MlyI	GAGTC	1 cut(s)	788
MmeI	TCCRAC	2 cut(s)	916, 1420
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	7 cut(s)	146, 261, 756, 876, 1287, 1349, 1412
MslI	CAYNNNNRTG	2 cut(s)	147, 876
MspA1I	CMGCKG	2 cut(s)	698, 1310
MspI	CCGG	2 cut(s)	461, 1360
Mva1269I	GAATGC	1 cut(s)	618
MwoI	GCNNNNNNNGC	4 cut(s)	305, 707, 907, 1307
NdeI	CATATG	1 cut(s)	564
NdeII	GATC	7 cut(s)	468, 577, 604, 819, 966, 1178, 1253
NlaIII	CATG	5 cut(s)	98, 316, 596, 853, 1404
NlaIV	GGNNCC	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	137
PagI	TCATGA	1 cut(s)	849
PceI	AGGCCT	1 cut(s)	419
PctI	GAATGC	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	9 cut(s)	62, 134, 243, 677, 841, 928, 1019, 1056, 1264
PflFI	GACNNNGTC	1 cut(s)	1396
PflMI	CCANNNNNTGG	1 cut(s)	1275
PkrI	GCNGC	1 cut(s)	700
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
PpuMI	RGGWCCY	1 cut(s)	1048
PshAI	GACNNNNGTC	1 cut(s)	1226
Psp5II	RGGWCCY	1 cut(s)	1048
PspFI	CCCAGC	2 cut(s)	73, 287
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	4 cut(s)	252, 908, 1048, 1228
PspPPI	RGGWCCY	1 cut(s)	1048
PstNI	CAGNNNCTG	1 cut(s)	1022
PsuI	RGATCY	2 cut(s)	468, 1253
PsyI	GACNNNGTC	1 cut(s)	1396
PvuII	CAGCTG	2 cut(s)	698, 1310
RsaI	GTAC	1 cut(s)	1100
RsaNI	GTAC	1 cut(s)	1099
RseI	CAYNNNNRTG	2 cut(s)	147, 876
SaqAI	TTAA	7 cut(s)	146, 261, 756, 876, 1287, 1349, 1412
SatI	GCNGC	1 cut(s)	699
Sau3AI	GATC	7 cut(s)	468, 577, 604, 819, 966, 1178, 1253
Sau96I	GGNCC	4 cut(s)	252, 908, 1048, 1228
SchI	GAGTC	1 cut(s)	788
SfaNI	GCATC	2 cut(s)	710, 1150
SfcI	CTRYAG	1 cut(s)	705
SfuI	TTCGAA	1 cut(s)	137
SinI	GGWCC	2 cut(s)	1048, 1228
SmiI	ATTTAAAT	1 cut(s)	147
SmiMI	CAYNNNNRTG	2 cut(s)	147, 876
SmlI	CTYRAG	2 cut(s)	682, 1144
SmoI	CTYRAG	2 cut(s)	682, 1144
Sse9I	AATT	9 cut(s)	44, 101, 351, 375, 386, 489, 528, 1289, 1446
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	1 cut(s)	989
SspMI	CTAG	3 cut(s)	131, 201, 647
StuI	AGGCCT	1 cut(s)	419
StyI	CCWWGG	4 cut(s)	663, 785, 1051, 1164
SwaI	ATTTAAAT	1 cut(s)	147
TaaI	ACNGT	5 cut(s)	634, 952, 1156, 1261, 1373
TaqI	TCGA	2 cut(s)	137, 777
TasI	AATT	9 cut(s)	44, 101, 351, 375, 386, 489, 528, 1289, 1446
TfiI	GAWTC	9 cut(s)	62, 134, 243, 677, 841, 928, 1019, 1056, 1264
Tru1I	TTAA	7 cut(s)	146, 261, 756, 876, 1287, 1349, 1412
Tru9I	TTAA	7 cut(s)	146, 261, 756, 876, 1287, 1349, 1412
TscAI	CASTG	2 cut(s)	1077, 1230
TseI	GCWGC	1 cut(s)	698
TspDTI	ATGAA	6 cut(s)	329, 548, 941, 1097, 1124, 1204
TspGWI	ACGGA	1 cut(s)	1049
TspRI	CASTG	2 cut(s)	1077, 1230
Tth111I	GACNNNGTC	1 cut(s)	1396
Van91I	CCANNNNNTGG	1 cut(s)	1275
VpaK11BI	GGWCC	2 cut(s)	1048, 1228
XapI	RAATTY	1 cut(s)	1289
XbaI	TCTAGA	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	3 cut(s)	131, 201, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.