Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016093

Physical Location & Seq

Genomic Coordinates Reverse (-)

52871958 .. 52875156

Gene Structure 3199 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG374800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGATAGTAACTATTCAGCTATTCGCAAAACCTCGTATTTAGAATTGCAATCGCAAAATGATACTGAAAGCCCGAGACTTGGTCCCAAATCCGGTGGGAATTTCCACACTTATGAGGATGAAAGGTTCAATATAGACGATGGTGATGATTTTGATGATAGTCTTAATTTTCATGATGGGAATTATCCGCTTGTTGTTGATGGGTCTAAGCGTGATGGTGGGTCTGGAATCTCCGGGGCGGTGTTTAATCTCACCACTACCATTATTGGGGCTGGGATTATGGCTCTGCCTGCCACCATGAAGGTTCTTGGTGTGGTTTGGGGGTTTATTTTGATAATCTTGATGGGTATTTTGTCTGAAGTTAGTGTCGAATTGTTGGTGAGATTTTCGGTTTTGTCAAAGGCTACATCCTATGGGGAGGTTGTTCAGTATGCCTTGGGAAGACCCGCGAGGATAATATCGGAGATTTGCATAATCGTCAACAATGCAGGCGTGTTGGTGGTGTATTTGATAATTATGGGGGATGTTATGTCTGGTTCACTTCATCATGTGGGGGTTTTCGATCAATGGCTGGGGCATGGGGTTTGGGATCATAGAAGGCTACTGATTTTGTTTATGTTGGTGGTTTTCTTAGCACCCCTTTGTGCCTTGGACAAGATTGATTCATTGAGCGTCACTTCGGCTGCTTCTGTAGCTCTTGCAGTTGTGTTTGTTGTGGTTGCTTGTGCTATAGCTTCTATTAAGCTTGCTGAAGGGAAAACAGACTCTCCTAGGATGTCACCAGATTTTGGGTCGAAGAAGGCAATATTAGATTTGCTTGTGGTGATTCCTATCATGACCAATGCTTACGTCTGCCATTTTAATGTTCAACCTATATATAACGAGCTTGAAGGACGGTCTCCTCAGAAGATGAACCGGGTTGGAAGGATCACGACTGTTCTTTGCATTGTGGTCTATTCTTTGACAGCCATATCTGGCTATCTACTCTTTGGAAAGGATACAGAGTCTGATGTGCTGACTAACTTTGATAAGGACCTTGGGATCCGTTACAGCACAGCGCTGAATTATATCGTCAGAGTTGGTTACATTTTTCATTTGCTTCTTGTATTCCCTGTTGTACATTTCTCGTTGAGACAAACCGTGGATGCCTTGGTGTTTGAGGGATCAGCTCCACTGCCAGAGAGTAGAAAGAGGTGTCTTATATTGACGCTGGTCTTGCTGGCACTTATTTATTTAGGATCTACCATGATTCCCAATATTTGGACAGCTTTTAAATTTACAGGGGCAACAACAGCTGTGTCATTGGGATTTATATTCCCTTCTCTTATTGCAATTAAGCTATCTCGGAAAGGGGAGGGTTTGAGCTTTGCAGAGAAGCTCGTGTCATGGTTCATGTTGGTAATGGCAATAGCAGTCAGCGTCGTTGGAGTAGTTGGGAATATATATAGCCTCAATAGCAAATCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04727 map04727

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

489

Amino Acids

53.27

Weight (kDa)

6.16

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	77 - 480	8.7e-58	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	77 - 475	5.7e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80510
fragaria_vesca	FvH4_6g29140
malus_domestica	MD17G1217500.v1.1
prunus_persica	Prupe.3G093200_v2.0.a1
pyrus_communis	pycom17g22180
rosa_chinensis	RchiOBHm_Chr2g0134331
rosa_laevigata	RLG00000019386
rosa_multiflora	Rmu_sc0014586.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110320
rosa_rugosa	Rorug02G0316100
rosa_samantha	Rh2AG368800 Rh2BG374800 Rh2CG352500 Rh2DG392100
rosa_wichuraiana	Rw2G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	788, 1260
AccII	CGCG	1 cut(s)	449
AciI	CCGC	3 cut(s)	188, 239, 447
AclWI	GGATC	6 cut(s)	597, 935, 1036, 1049, 1171, 1246
AcsI	RAATTY	2 cut(s)	100, 1274
AcuI	CTGAAG	2 cut(s)	378, 771
AfaI	GTAC	1 cut(s)	1119
AfeI	AGCGCT	1 cut(s)	1059
AfiI	CCNNNNNNNGG	5 cut(s)	80, 92, 267, 788, 1260
AgsI	TTSAA	3 cut(s)	130, 869, 890
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
Alw26I	GTCTC	3 cut(s)	70, 903, 1126
AlwI	GGATC	6 cut(s)	597, 935, 1036, 1049, 1171, 1246
AlwNI	CAGNNNCTG	1 cut(s)	1007
Ama87I	CYCGRG	1 cut(s)	73
Aor51HI	AGCGCT	1 cut(s)	1059
ApeKI	GCWGC	1 cut(s)	683
ApoI	RAATTY	2 cut(s)	100, 1274
AspA2I	CCTAGG	1 cut(s)	770
AspLEI	GCGC	1 cut(s)	1060
AspS9I	GGNCC	2 cut(s)	83, 1033
AsuC2I	CCSGG	2 cut(s)	235, 917
AsuHPI	GGTGA	5 cut(s)	155, 244, 391, 771, 835
AvaI	CYCGRG	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	83, 1033
AvrII	CCTAGG	1 cut(s)	770
BamHI	GGATCC	1 cut(s)	1041
BauI	CACGAG	1 cut(s)	1379
BbsI	GAAGAC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	5 cut(s)	134, 170, 194, 209, 337
BciVI	GTATCC	1 cut(s)	991
BcnI	CCSGG	2 cut(s)	235, 917
BcoDI	GTCTC	3 cut(s)	70, 903, 1126
BfaI	CTAG	1 cut(s)	771
BfmI	CTRYAG	2 cut(s)	690, 729
BfoI	RGCGCY	1 cut(s)	1061
BfuI	GTATCC	1 cut(s)	991
BisI	GCNGC	1 cut(s)	684
BlnI	CCTAGG	1 cut(s)	770
BlsI	GCNGC	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	235, 917
Bme18I	GGWCC	2 cut(s)	83, 1033
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	83, 1033
BmiI	GGNNCC	2 cut(s)	85, 1043
BmrFI	CCNGG	2 cut(s)	235, 917
BmsI	GCATC	1 cut(s)	1135
BoxI	GACNNNNGTC	1 cut(s)	1211
BpiI	GAAGAC	1 cut(s)	448
BpuMI	CCSGG	2 cut(s)	235, 917
BsaBI	GATNNNNATC	1 cut(s)	830
BsaI	GGTCTC	1 cut(s)	903
BsaJI	CCNNGG	7 cut(s)	234, 435, 648, 770, 1036, 1140, 1149
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	751, 781
Bsc4I	CCNNNNNNNGG	5 cut(s)	80, 92, 267, 788, 1260
Bse8I	GATNNNNATC	1 cut(s)	830
BseDI	CCNNGG	7 cut(s)	234, 435, 648, 770, 1036, 1140, 1149
BseGI	GGATG	5 cut(s)	124, 407, 529, 780, 1150
BseJI	GATNNNNATC	1 cut(s)	830
BseLI	CCNNNNNNNGG	5 cut(s)	80, 92, 267, 788, 1260
BseMII	CTCAG	1 cut(s)	917
BseRI	GAGGAG	1 cut(s)	891
BseXI	GCAGC	1 cut(s)	670
BseYI	CCCAGC	2 cut(s)	272, 571
Bsh1236I	CGCG	1 cut(s)	449
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	3 cut(s)	93, 234, 916
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	5 cut(s)	80, 92, 267, 788, 1260
BsmAI	GTCTC	3 cut(s)	70, 903, 1126
BsmFI	GGGAC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	903
BsoBI	CYCGRG	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	1117
Bsp143I	GATC	6 cut(s)	562, 589, 927, 1041, 1163, 1238
BspACI	CCGC	3 cut(s)	188, 239, 447
BspCNI	CTCAG	1 cut(s)	916
BspFNI	CGCG	1 cut(s)	449
BspHI	TCATGA	2 cut(s)	172, 834
BspLI	GGNNCC	2 cut(s)	85, 1043
BspPI	GGATC	6 cut(s)	597, 935, 1036, 1049, 1171, 1246
BspTNI	GGTCTC	1 cut(s)	903
BsrGI	TGTACA	1 cut(s)	1117
BssECI	CCNNGG	7 cut(s)	234, 435, 648, 770, 1036, 1140, 1149
BssMI	GATC	6 cut(s)	562, 589, 927, 1041, 1163, 1238
BssSI	CACGAG	1 cut(s)	1379
BssT1I	CCWWGG	5 cut(s)	435, 648, 770, 1036, 1149
Bst2BI	CACGAG	1 cut(s)	1379
Bst4CI	ACNGT	3 cut(s)	897, 937, 1141
BstAUI	TGTACA	1 cut(s)	1117
BstC8I	GCNNGC	4 cut(s)	291, 490, 747, 1221
BstDEI	CTNAG	3 cut(s)	207, 631, 903
BstDSI	CCRYGG	1 cut(s)	1140
BstF5I	GGATG	5 cut(s)	124, 407, 529, 780, 1150
BstFNI	CGCG	1 cut(s)	449
BstH2I	RGCGCY	1 cut(s)	1061
BstHHI	GCGC	1 cut(s)	1060
BstKTI	GATC	6 cut(s)	565, 592, 930, 1044, 1166, 1241
BstMAI	GTCTC	3 cut(s)	70, 903, 1126
BstMBI	GATC	6 cut(s)	562, 589, 927, 1041, 1163, 1238
BstMWI	GCNNNNNNNGC	5 cut(s)	290, 692, 1216, 1292, 1455
BstPAI	GACNNNNGTC	1 cut(s)	1211
BstSCI	CCNGG	2 cut(s)	233, 915
BstSFI	CTRYAG	2 cut(s)	690, 729
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	1 cut(s)	670
BstV2I	GAAGAC	1 cut(s)	448
BstX2I	RGATCY	2 cut(s)	1041, 1238
BstYI	RGATCY	2 cut(s)	1041, 1238
BsuI	GTATCC	1 cut(s)	991
BtgI	CCRYGG	1 cut(s)	1140
BtsCI	GGATG	5 cut(s)	124, 407, 529, 780, 1150
BtsI	GCAGTG	1 cut(s)	1172
BtsIMutI	CAGTG	1 cut(s)	1172
Cac8I	GCNNGC	4 cut(s)	291, 490, 747, 1221
CaiI	CAGNNNCTG	1 cut(s)	1007
CciI	TCATGA	2 cut(s)	172, 834
CfoI	GCGC	1 cut(s)	1060
Cfr13I	GGNCC	2 cut(s)	83, 1033
CseI	GACGC	3 cut(s)	661, 1216, 1408
Csp6I	GTAC	1 cut(s)	1118
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	8 cut(s)	173, 298, 548, 578, 835, 1246, 1386, 1393
CviQI	GTAC	1 cut(s)	1118
DdeI	CTNAG	3 cut(s)	207, 631, 903
DpnI	GATC	6 cut(s)	564, 591, 929, 1043, 1165, 1240
DpnII	GATC	6 cut(s)	562, 589, 927, 1041, 1163, 1238
DraI	TTTAAA	1 cut(s)	1273
Eco130I	CCWWGG	5 cut(s)	435, 648, 770, 1036, 1149
Eco31I	GGTCTC	1 cut(s)	903
Eco47I	GGWCC	2 cut(s)	83, 1033
Eco47III	AGCGCT	1 cut(s)	1059
Eco57I	CTGAAG	2 cut(s)	378, 771
Eco88I	CYCGRG	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	1033
EcoT14I	CCWWGG	5 cut(s)	435, 648, 770, 1036, 1149
ErhI	CCWWGG	5 cut(s)	435, 648, 770, 1036, 1149
FaeI	CATG	8 cut(s)	176, 301, 551, 581, 838, 1249, 1389, 1396
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	8 cut(s)	172, 297, 547, 577, 834, 1245, 1385, 1392
FauI	CCCGC	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	5 cut(s)	131, 394, 536, 787, 1157
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	1 cut(s)	771
GlaI	GCGC	1 cut(s)	1059
GluI	GCNGC	1 cut(s)	684
GsaI	CCCAGC	2 cut(s)	276, 575
HaeII	RGCGCY	1 cut(s)	1061
HapII	CCGG	3 cut(s)	93, 234, 916
HgaI	GACGC	3 cut(s)	661, 1216, 1408
HhaI	GCGC	1 cut(s)	1060
Hin1II	CATG	8 cut(s)	176, 301, 551, 581, 838, 1249, 1389, 1396
Hin6I	GCGC	1 cut(s)	1058
HinP1I	GCGC	1 cut(s)	1058
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HindIII	AAGCTT	1 cut(s)	743
HinfI	GANTC	6 cut(s)	228, 662, 764, 826, 1004, 1249
HpaII	CCGG	3 cut(s)	93, 234, 916
HphI	GGTGA	5 cut(s)	155, 244, 391, 771, 835
Hpy166II	GTNNAC	2 cut(s)	481, 539
Hpy188I	TCNGA	7 cut(s)	358, 463, 906, 1009, 1076, 1347, 1465
Hpy188III	TCNNGA	5 cut(s)	173, 225, 340, 835, 931
Hpy8I	GTNNAC	2 cut(s)	481, 539
Hpy99I	CGWCG	1 cut(s)	1424
HpyAV	CCTTC	7 cut(s)	295, 591, 746, 793, 884, 918, 1329
HpyCH4III	ACNGT	3 cut(s)	897, 937, 1141
HpyCH4IV	ACGT	1 cut(s)	849
HpyCH4V	TGCA	7 cut(s)	49, 471, 488, 701, 945, 1331, 1370
HpyF10VI	GCNNNNNNNGC	5 cut(s)	290, 692, 1216, 1292, 1455
HpyF3I	CTNAG	3 cut(s)	207, 631, 903
HpySE526I	ACGT	1 cut(s)	849
Hsp92II	CATG	8 cut(s)	176, 301, 551, 581, 838, 1249, 1389, 1396
HspAI	GCGC	1 cut(s)	1058
Kzo9I	GATC	6 cut(s)	562, 589, 927, 1041, 1163, 1238
LmnI	GCTCC	1 cut(s)	1174
Lsp1109I	GCAGC	1 cut(s)	670
LweI	GCATC	1 cut(s)	1135
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	849
MaeIII	GTNAC	5 cut(s)	8, 673, 777, 1046, 1082
MalI	GATC	6 cut(s)	564, 591, 929, 1043, 1165, 1240
MboI	GATC	6 cut(s)	562, 589, 927, 1041, 1163, 1238
MboII	GAAGA	3 cut(s)	453, 808, 919
MflI	RGATCY	2 cut(s)	1041, 1238
MluCI	AATT	9 cut(s)	44, 100, 166, 181, 371, 513, 1063, 1274, 1332
MlyI	GAGTC	2 cut(s)	758, 1013
MmeI	TCCRAC	2 cut(s)	901, 1405
MnlI	CCTC	9 cut(s)	43, 109, 412, 444, 912, 1153, 1185, 1348, 1460
MseI	TTAA	6 cut(s)	165, 246, 741, 861, 1272, 1335
MslI	CAYNNNNRTG	2 cut(s)	111, 861
MspA1I	CMGCKG	1 cut(s)	1295
MspI	CCGG	3 cut(s)	93, 234, 916
MspR9I	CCNGG	2 cut(s)	235, 917
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	5 cut(s)	290, 692, 1216, 1292, 1455
NciI	CCSGG	2 cut(s)	235, 917
NdeII	GATC	6 cut(s)	562, 589, 927, 1041, 1163, 1238
NlaIII	CATG	8 cut(s)	176, 301, 551, 581, 838, 1249, 1389, 1396
NlaIV	GGNNCC	2 cut(s)	85, 1043
NmuCI	GTSAC	2 cut(s)	673, 777
PagI	TCATGA	2 cut(s)	172, 834
PfeI	GAWTC	4 cut(s)	228, 662, 826, 1249
PflFI	GACNNNGTC	1 cut(s)	81
PflMI	CCANNNNNTGG	2 cut(s)	788, 1260
PkrI	GCNGC	1 cut(s)	685
PleI	GAGTC	2 cut(s)	758, 1012
PpsI	GAGTC	2 cut(s)	758, 1012
PpuMI	RGGWCCY	1 cut(s)	1033
PshAI	GACNNNNGTC	1 cut(s)	1211
Psp5II	RGGWCCY	1 cut(s)	1033
PspFI	CCCAGC	2 cut(s)	272, 571
PspN4I	GGNNCC	2 cut(s)	85, 1043
PspPI	GGNCC	2 cut(s)	83, 1033
PspPPI	RGGWCCY	1 cut(s)	1033
PstNI	CAGNNNCTG	1 cut(s)	1007
PsuI	RGATCY	2 cut(s)	1041, 1238
PsyI	GACNNNGTC	1 cut(s)	81
PvuII	CAGCTG	1 cut(s)	1295
RsaI	GTAC	1 cut(s)	1119
RsaNI	GTAC	1 cut(s)	1118
RseI	CAYNNNNRTG	2 cut(s)	111, 861
SaqAI	TTAA	6 cut(s)	165, 246, 741, 861, 1272, 1335
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	6 cut(s)	562, 589, 927, 1041, 1163, 1238
Sau96I	GGNCC	2 cut(s)	83, 1033
SchI	GAGTC	2 cut(s)	758, 1013
ScrFI	CCNGG	2 cut(s)	235, 917
SfaNI	GCATC	1 cut(s)	1135
SfcI	CTRYAG	2 cut(s)	690, 729
SinI	GGWCC	2 cut(s)	83, 1033
SmiMI	CAYNNNNRTG	2 cut(s)	111, 861
Sse9I	AATT	9 cut(s)	44, 100, 166, 181, 371, 513, 1063, 1274, 1332
SsiI	CCGC	3 cut(s)	188, 239, 447
SspI	AATATT	2 cut(s)	807, 1258
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	2 cut(s)	233, 915
StyI	CCWWGG	5 cut(s)	435, 648, 770, 1036, 1149
TaaI	ACNGT	3 cut(s)	897, 937, 1141
TaiI	ACGT	1 cut(s)	852
TaqI	TCGA	3 cut(s)	369, 561, 794
TasI	AATT	9 cut(s)	44, 100, 166, 181, 371, 513, 1063, 1274, 1332
TatI	WGTACW	1 cut(s)	1117
TfiI	GAWTC	4 cut(s)	228, 662, 826, 1249
Tru1I	TTAA	6 cut(s)	165, 246, 741, 861, 1272, 1335
Tru9I	TTAA	6 cut(s)	165, 246, 741, 861, 1272, 1335
TscAI	CASTG	1 cut(s)	1179
TseFI	GTSAC	2 cut(s)	673, 777
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	2 cut(s)	673, 777
TspDTI	ATGAA	8 cut(s)	135, 161, 314, 533, 654, 926, 1082, 1381
TspGWI	ACGGA	1 cut(s)	1034
TspRI	CASTG	1 cut(s)	1179
Tth111I	GACNNNGTC	1 cut(s)	81
Van91I	CCANNNNNTGG	2 cut(s)	788, 1260
VpaK11BI	GGWCC	2 cut(s)	83, 1033
XapI	RAATTY	2 cut(s)	100, 1274
XmaJI	CCTAGG	1 cut(s)	770
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.