Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016093

Physical Location & Seq

Genomic Coordinates Reverse (-)

22474354 .. 22475811

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGATAGTAACTATTCAGCTATTCGCAAGAACTCATATTTAGAATTGCAATCCCAATACGATACTAGAAGCCCCGGACTTGCTCCCAAACCCCGTTCGAATTTCAACTCTTATCCTGAGGATAACGATGATGGGGATGATTTTGATGATAATCTTAATTTTGATGGAGGGAATTATCCCCTTGTTGTTGATGGGTCTAAGCATGATGGGTCTGGAATCTCCGGGGCGGTGTTTAATCTCACCACTACCATTATTGGGGCTGGGATTATGGCTCTGCCTGCCACCATGAAGGTTCTTGGTGTCGTTTGGGGGTTTGTTTTGATAATCTTGATGGGTCTTTTGTCTGAAGTTAGTGTCGAATTGTTGGTGAGGTTTTCGGTTATGTCAAAGGCTTCCTCCTATGGGGAGGTTGTGCAATACGCATTGGGAAGACCCGCGAGGATAATCTCGGAGATTTGCATAATTTGCAACAATGCAGGCGTGTTGGTGGTGTATTTGATCATTATGGGGGATGTTATGTCAGGTTCTCTTCATCATATGGGGGTTTTCGATCAGTGGTTGGGGCATGGCGTTTGGGATCATAGAAGGCTACTGATTTTGTTTATGTTGGTTGTTTTCTTAGCACCCCTTTGTGCCTTGGACAAGATTGATTCTTTGAGCATCACTTCAGCGGCTTCTGTAGCTCTTGCAGTTGTGTTTGTTGTGGTTGCTTGTGCTATAGCTTTTATTAAGCTTGCTGAAGGGAAAACAGACTCTCCTAGGATGTCACCAGATTTTGGGTCGAAGAAGGCCATCTTAGATCTGCTTGTGGTGATTCCTATCATGACCAATGCTTATGTTTGCCATTTTAATGTCCAACCTATATATAATGAGCTTGAAGGACGGTCCATTCAGAAGATGAACCGGGTTGGAAGGATCACGACTGTTCTTTGCATTGTGGTCTATTCTTTTACAGCCATATCCGGCTATCTACTCTTTGGAAAGGATACCGAGTCTGATGTGCTGACTAACTTTGATAAGGACCTTGGGATCCGTTACAGCTCAGCGCTGAATTATATCGTCAGAGTTGGTTACATTTTTCATTTGCTTCTTGTATTCCCTGTTGTACATTTCTCGTTGAGACAAACCGTGGATGCTTTGGTATTTGAGGGATCAGCTCCACTATCAGAGAGTAGAAAGAGGTGTCTTATATTGACGCTGGTCCTGCTGGCACTTATTTATCTAGGATCTACCATGATTCCCAACATTTGGACAGCCTTTAAATTTACAGGAGCAACAACAGCTGTGTCATTGGGATTTATATTCCCTTCTCTTATTGCAATTAAGCTAAGTCGGAAAGGGGAAGTTTTAAGCTCTGCAGAGAAGATCGTGTCATGGTTCATGTTGGTAATGGCAATAACAGTCAGCGTCGTTGGAGTAGTTGGGAATATTTATAGCCTCAATAGCAAATCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0031984 GO:0034220 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04727 map04727

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

486

Amino Acids

52.94

Weight (kDa)

6.26

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	73 - 475	8.5e-57	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	73 - 471	6.5e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80510
fragaria_vesca	FvH4_6g29140
malus_domestica	MD17G1217500.v1.1
prunus_persica	Prupe.3G093200_v2.0.a1
pyrus_communis	pycom17g22180
rosa_chinensis	RchiOBHm_Chr2g0134331
rosa_laevigata	RLG00000019386
rosa_multiflora	Rmu_sc0014586.1_g000002
rosa_roxburghii	Rroxscaffold_2G00110320
rosa_rugosa	Rorug02G0316100
rosa_samantha	Rh2AG368800 Rh2BG374800 Rh2CG352500 Rh2DG392100
rosa_wichuraiana	Rw2G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	776, 1248
AccII	CGCG	1 cut(s)	437
AciI	CCGC	3 cut(s)	227, 435, 671
AclWI	GGATC	6 cut(s)	585, 923, 1024, 1037, 1159, 1234
AcsI	RAATTY	2 cut(s)	100, 1262
AcuI	CTGAAG	3 cut(s)	366, 651, 759
AfaI	GTAC	1 cut(s)	1107
AfeI	AGCGCT	1 cut(s)	1047
AfiI	CCNNNNNNNGG	4 cut(s)	255, 402, 776, 1248
AgsI	TTSAA	2 cut(s)	106, 878
Alw26I	GTCTC	1 cut(s)	1114
AlwI	GGATC	6 cut(s)	585, 923, 1024, 1037, 1159, 1234
Aor51HI	AGCGCT	1 cut(s)	1047
AoxI	GGCC	1 cut(s)	789
ApoI	RAATTY	2 cut(s)	100, 1262
AspA2I	CCTAGG	1 cut(s)	758
AspLEI	GCGC	1 cut(s)	1048
AspS9I	GGNCC	3 cut(s)	885, 1021, 1201
AsuC2I	CCSGG	3 cut(s)	75, 223, 905
AsuHPI	GGTGA	4 cut(s)	232, 379, 759, 823
AsuII	TTCGAA	1 cut(s)	98
AvaII	GGWCC	3 cut(s)	885, 1021, 1201
AvrII	CCTAGG	1 cut(s)	758
AxyI	CCTNAGG	1 cut(s)	117
BamHI	GGATCC	1 cut(s)	1029
BbsI	GAAGAC	1 cut(s)	436
BccI	CCATC	6 cut(s)	125, 158, 185, 200, 325, 800
BciVI	GTATCC	1 cut(s)	979
BclI	TGATCA	1 cut(s)	498
BcnI	CCSGG	3 cut(s)	75, 223, 905
BcoDI	GTCTC	1 cut(s)	1114
BfaI	CTAG	3 cut(s)	66, 759, 1223
BfmI	CTRYAG	3 cut(s)	678, 717, 1356
BfoI	RGCGCY	1 cut(s)	1049
BfuI	GTATCC	1 cut(s)	979
BglII	AGATCT	1 cut(s)	799
BisI	GCNGC	1 cut(s)	672
BlnI	CCTAGG	1 cut(s)	758
BlpI	GCTNAGC	1 cut(s)	1042
BlsI	GCNGC	1 cut(s)	673
Bme1390I	CCNGG	3 cut(s)	75, 223, 905
Bme18I	GGWCC	3 cut(s)	885, 1021, 1201
BmgT120I	GGNCC	3 cut(s)	885, 1021, 1201
BmiI	GGNNCC	1 cut(s)	1031
BmrFI	CCNGG	3 cut(s)	75, 223, 905
BmsI	GCATC	2 cut(s)	669, 1123
BoxI	GACNNNNGTC	1 cut(s)	1199
BpiI	GAAGAC	1 cut(s)	436
Bpu1102I	GCTNAGC	1 cut(s)	1042
Bpu14I	TTCGAA	1 cut(s)	98
BpuMI	CCSGG	3 cut(s)	75, 223, 905
BsaBI	GATNNNNATC	2 cut(s)	150, 818
BsaJI	CCNNGG	6 cut(s)	73, 222, 636, 758, 1024, 1128
BsaXI	ACNNNNNCTCC	2 cut(s)	739, 769
Bsc4I	CCNNNNNNNGG	4 cut(s)	255, 402, 776, 1248
Bse21I	CCTNAGG	1 cut(s)	117
Bse8I	GATNNNNATC	2 cut(s)	150, 818
BseDI	CCNNGG	6 cut(s)	73, 222, 636, 758, 1024, 1128
BseGI	GGATG	4 cut(s)	142, 517, 768, 1138
BseJI	GATNNNNATC	2 cut(s)	150, 818
BseLI	CCNNNNNNNGG	4 cut(s)	255, 402, 776, 1248
BseMII	CTCAG	2 cut(s)	108, 1056
BseYI	CCCAGC	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	791
BsiSI	CCGG	4 cut(s)	75, 222, 904, 963
BslI	CCNNNNNNNGG	4 cut(s)	255, 402, 776, 1248
BsmAI	GTCTC	1 cut(s)	1114
BsnI	GGCC	1 cut(s)	791
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1407I	TGTACA	1 cut(s)	1105
Bsp143I	GATC	9 cut(s)	498, 550, 577, 799, 915, 1029, 1151, 1226, 1365
Bsp1720I	GCTNAGC	1 cut(s)	1042
BspACI	CCGC	3 cut(s)	227, 435, 671
BspANI	GGCC	1 cut(s)	791
BspCNI	CTCAG	2 cut(s)	109, 1055
BspFNI	CGCG	1 cut(s)	437
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	1 cut(s)	1031
BspMAI	CTGCAG	1 cut(s)	1360
BspPI	GGATC	6 cut(s)	585, 923, 1024, 1037, 1159, 1234
BspT104I	TTCGAA	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	1105
BssECI	CCNNGG	6 cut(s)	73, 222, 636, 758, 1024, 1128
BssMI	GATC	9 cut(s)	498, 550, 577, 799, 915, 1029, 1151, 1226, 1365
BssT1I	CCWWGG	3 cut(s)	636, 758, 1024
Bst4CI	ACNGT	4 cut(s)	885, 925, 1129, 1402
Bst6I	CTCTTC	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	465
BstAUI	TGTACA	1 cut(s)	1105
BstBI	TTCGAA	1 cut(s)	98
BstC8I	GCNNGC	4 cut(s)	279, 478, 735, 1209
BstDEI	CTNAG	6 cut(s)	117, 198, 619, 796, 1042, 1328
BstDSI	CCRYGG	1 cut(s)	1128
BstF5I	GGATG	4 cut(s)	142, 517, 768, 1138
BstFNI	CGCG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	1049
BstHHI	GCGC	1 cut(s)	1048
BstKTI	GATC	9 cut(s)	501, 553, 580, 802, 918, 1032, 1154, 1229, 1368
BstMAI	GTCTC	1 cut(s)	1114
BstMBI	GATC	9 cut(s)	498, 550, 577, 799, 915, 1029, 1151, 1226, 1365
BstMWI	GCNNNNNNNGC	6 cut(s)	278, 465, 680, 1204, 1280, 1443
BstPAI	GACNNNNGTC	1 cut(s)	1199
BstSCI	CCNGG	3 cut(s)	73, 221, 903
BstSFI	CTRYAG	3 cut(s)	678, 717, 1356
BstUI	CGCG	1 cut(s)	437
BstV2I	GAAGAC	1 cut(s)	436
BstX2I	RGATCY	3 cut(s)	799, 1029, 1226
BstYI	RGATCY	3 cut(s)	799, 1029, 1226
Bsu36I	CCTNAGG	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	979
BsuRI	GGCC	1 cut(s)	791
BtgI	CCRYGG	1 cut(s)	1128
BtsCI	GGATG	4 cut(s)	142, 517, 768, 1138
BtsIMutI	CAGTG	1 cut(s)	560
Cac8I	GCNNGC	4 cut(s)	279, 478, 735, 1209
CciI	TCATGA	1 cut(s)	822
CfoI	GCGC	1 cut(s)	1048
Cfr13I	GGNCC	3 cut(s)	885, 1021, 1201
CseI	GACGC	2 cut(s)	1204, 1396
Csp6I	GTAC	1 cut(s)	1106
CviAII	CATG	7 cut(s)	203, 286, 566, 823, 1234, 1374, 1381
CviQI	GTAC	1 cut(s)	1106
DdeI	CTNAG	6 cut(s)	117, 198, 619, 796, 1042, 1328
DpnI	GATC	9 cut(s)	500, 552, 579, 801, 917, 1031, 1153, 1228, 1367
DpnII	GATC	9 cut(s)	498, 550, 577, 799, 915, 1029, 1151, 1226, 1365
DraI	TTTAAA	1 cut(s)	1261
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	3 cut(s)	636, 758, 1024
Eco47I	GGWCC	3 cut(s)	885, 1021, 1201
Eco47III	AGCGCT	1 cut(s)	1047
Eco57I	CTGAAG	3 cut(s)	366, 651, 759
Eco81I	CCTNAGG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	1021
EcoT14I	CCWWGG	3 cut(s)	636, 758, 1024
ErhI	CCWWGG	3 cut(s)	636, 758, 1024
FaeI	CATG	7 cut(s)	206, 289, 569, 826, 1237, 1377, 1384
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FatI	CATG	7 cut(s)	202, 285, 565, 822, 1233, 1373, 1380
FauI	CCCGC	1 cut(s)	442
FauNDI	CATATG	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	672
FokI	GGATG	4 cut(s)	149, 524, 775, 1145
Fsp4HI	GCNGC	1 cut(s)	672
FspBI	CTAG	3 cut(s)	66, 759, 1223
GlaI	GCGC	1 cut(s)	1047
GluI	GCNGC	1 cut(s)	672
GsaI	CCCAGC	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	1049
HaeIII	GGCC	1 cut(s)	791
HapII	CCGG	4 cut(s)	75, 222, 904, 963
HgaI	GACGC	2 cut(s)	1204, 1396
HhaI	GCGC	1 cut(s)	1048
Hin1II	CATG	7 cut(s)	206, 289, 569, 826, 1237, 1377, 1384
Hin6I	GCGC	1 cut(s)	1046
HinP1I	GCGC	1 cut(s)	1046
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	6 cut(s)	216, 650, 752, 814, 992, 1237
HpaII	CCGG	4 cut(s)	75, 222, 904, 963
HphI	GGTGA	4 cut(s)	232, 379, 759, 823
Hpy188I	TCNGA	8 cut(s)	346, 451, 894, 997, 1064, 1168, 1335, 1453
Hpy188III	TCNNGA	5 cut(s)	116, 213, 328, 823, 919
Hpy99I	CGWCG	1 cut(s)	1412
HpyAV	CCTTC	7 cut(s)	283, 579, 734, 781, 872, 906, 1317
HpyCH4III	ACNGT	4 cut(s)	885, 925, 1129, 1402
HpyCH4V	TGCA	9 cut(s)	49, 415, 459, 468, 476, 689, 933, 1319, 1358
HpyF10VI	GCNNNNNNNGC	6 cut(s)	278, 465, 680, 1204, 1280, 1443
HpyF3I	CTNAG	6 cut(s)	117, 198, 619, 796, 1042, 1328
Hsp92II	CATG	7 cut(s)	206, 289, 569, 826, 1237, 1377, 1384
HspAI	GCGC	1 cut(s)	1046
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	9 cut(s)	498, 550, 577, 799, 915, 1029, 1151, 1226, 1365
LmnI	GCTCC	3 cut(s)	88, 1162, 1271
LweI	GCATC	2 cut(s)	669, 1123
MaeI	CTAG	3 cut(s)	66, 759, 1223
MaeIII	GTNAC	4 cut(s)	8, 765, 1034, 1070
MalI	GATC	9 cut(s)	500, 552, 579, 801, 917, 1031, 1153, 1228, 1367
MboI	GATC	9 cut(s)	498, 550, 577, 799, 915, 1029, 1151, 1226, 1365
MboII	GAAGA	5 cut(s)	441, 521, 796, 907, 1375
MflI	RGATCY	3 cut(s)	799, 1029, 1226
MluCI	AATT	9 cut(s)	44, 100, 157, 172, 359, 462, 1051, 1262, 1320
MlyI	GAGTC	2 cut(s)	746, 1001
MmeI	TCCRAC	4 cut(s)	880, 889, 1313, 1393
MnlI	CCTC	9 cut(s)	112, 161, 363, 400, 406, 432, 1141, 1173, 1448
MseI	TTAA	7 cut(s)	156, 234, 729, 849, 1260, 1323, 1349
MslI	CAYNNNNRTG	1 cut(s)	849
MspA1I	CMGCKG	2 cut(s)	671, 1283
MspI	CCGG	4 cut(s)	75, 222, 904, 963
MspR9I	CCNGG	3 cut(s)	75, 223, 905
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	6 cut(s)	278, 465, 680, 1204, 1280, 1443
NciI	CCSGG	3 cut(s)	75, 223, 905
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	9 cut(s)	498, 550, 577, 799, 915, 1029, 1151, 1226, 1365
NlaIII	CATG	7 cut(s)	206, 289, 569, 826, 1237, 1377, 1384
NlaIV	GGNNCC	1 cut(s)	1031
NmuCI	GTSAC	1 cut(s)	765
NspV	TTCGAA	1 cut(s)	98
PagI	TCATGA	1 cut(s)	822
PfeI	GAWTC	4 cut(s)	216, 650, 814, 1237
PflMI	CCANNNNNTGG	2 cut(s)	776, 1248
PkrI	GCNGC	1 cut(s)	673
PleI	GAGTC	2 cut(s)	746, 1000
PpsI	GAGTC	2 cut(s)	746, 1000
PpuMI	RGGWCCY	1 cut(s)	1021
PshAI	GACNNNNGTC	1 cut(s)	1199
Psp5II	RGGWCCY	1 cut(s)	1021
PspFI	CCCAGC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	1031
PspPI	GGNCC	3 cut(s)	885, 1021, 1201
PspPPI	RGGWCCY	1 cut(s)	1021
PstI	CTGCAG	1 cut(s)	1360
PsuI	RGATCY	3 cut(s)	799, 1029, 1226
PvuII	CAGCTG	1 cut(s)	1283
RsaI	GTAC	1 cut(s)	1107
RsaNI	GTAC	1 cut(s)	1106
RseI	CAYNNNNRTG	1 cut(s)	849
SaqAI	TTAA	7 cut(s)	156, 234, 729, 849, 1260, 1323, 1349
SatI	GCNGC	1 cut(s)	672
Sau3AI	GATC	9 cut(s)	498, 550, 577, 799, 915, 1029, 1151, 1226, 1365
Sau96I	GGNCC	3 cut(s)	885, 1021, 1201
SchI	GAGTC	2 cut(s)	746, 1001
ScrFI	CCNGG	3 cut(s)	75, 223, 905
SfaNI	GCATC	2 cut(s)	669, 1123
SfcI	CTRYAG	3 cut(s)	678, 717, 1356
SfuI	TTCGAA	1 cut(s)	98
SinI	GGWCC	3 cut(s)	885, 1021, 1201
SmiMI	CAYNNNNRTG	1 cut(s)	849
Sse9I	AATT	9 cut(s)	44, 100, 157, 172, 359, 462, 1051, 1262, 1320
SsiI	CCGC	3 cut(s)	227, 435, 671
SspI	AATATT	1 cut(s)	1429
SspMI	CTAG	3 cut(s)	66, 759, 1223
StyD4I	CCNGG	3 cut(s)	73, 221, 903
StyI	CCWWGG	3 cut(s)	636, 758, 1024
TaaI	ACNGT	4 cut(s)	885, 925, 1129, 1402
TaqI	TCGA	4 cut(s)	98, 357, 549, 782
TasI	AATT	9 cut(s)	44, 100, 157, 172, 359, 462, 1051, 1262, 1320
TatI	WGTACW	1 cut(s)	1105
TauI	GCSGC	1 cut(s)	674
TfiI	GAWTC	4 cut(s)	216, 650, 814, 1237
Tru1I	TTAA	7 cut(s)	156, 234, 729, 849, 1260, 1323, 1349
Tru9I	TTAA	7 cut(s)	156, 234, 729, 849, 1260, 1323, 1349
TscAI	CASTG	1 cut(s)	560
TseFI	GTSAC	1 cut(s)	765
Tsp45I	GTSAC	1 cut(s)	765
TspDTI	ATGAA	5 cut(s)	302, 521, 914, 1070, 1369
TspGWI	ACGGA	1 cut(s)	1022
TspRI	CASTG	1 cut(s)	560
Van91I	CCANNNNNTGG	2 cut(s)	776, 1248
VpaK11BI	GGWCC	3 cut(s)	885, 1021, 1201
XapI	RAATTY	2 cut(s)	100, 1262
XmaJI	CCTAGG	1 cut(s)	758
XspI	CTAG	3 cut(s)	66, 759, 1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.