AT2G01260

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009397
Physical Location & Seq
Reverse (-)
135223 .. 137916
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01260.3

Sequence Viewer

Length: 1110 bp
ATGTTGGGTGCTGGATTTCAGTTGACGAGAGGCAGACACGGCGACGATCCTTTCTACACTTCCGCAAAAACTCGCAGGGCCAATCAGCGCATCGATCAGCTCCGTAGAGCTCAGAGCGACGTCTCTAACGTTCCATCATCAGCTCCTTCTCCGCATAAACAACAACTCGAGCCGTCCGATTTATCTTCCAGTAATCTAGATCGGTTTTTAGAGTCGGTCACACCATCCGTACCGGCTCAGTTTTTATCCAAGACATTGCTACGAGAAAGAAGAGCAGATGATGATTATAATAAACTTGTGCCTTATTTTGTGCTTGGTGATATATGGGACTCATTTGCAGAGTGGAGTGCTTACGGCACCGGTGTGCCTCTTGTTTTGAATAACAACAAGGATCGTGTTATCCAATACTATGTCCCTTCTTTGTCAGCCATTCAAATCTATGCTCATTCTCATGCCTTGGATTCATCTCTTAAATCAAGGCGTCCTGGTGATAGTAGCGACAGTGATTTTCGGGATTCAAGTAGCGATGTTAGCAGCGATAGTGATTCCGAGCGGGTTTCTGCTAGAGTAGACTGTATCTCATTGAGGGATCAACATCAGGAAGACTCTTCCAGTGATGATGGCGAACCTTTAGGCTCTCAAGGTCGTTTGATGTTTGAGTATCTTGAAAGAGACCTTCCATACATCCGTGAACCTTTTGCTGATAAGGTCTTGGACCTCGCAGCTCAGTTTCCCGAGCTAATGACGCTGAGAAGCTGTGACTTACTTCGGTCAAGCTGGTTTTCTGTTGCATGGTACCCAATTTACAGAATACCCACAGGACCGACACTGAAGGACCTGGATGCTTGTTTCTTGACGTATCATTCCCTACACACATCTTTTGGAGGTGAAGGCAGTGAACAATCAATGAGCCTTACGCAACCAAGGGAGAGCGAGAAGATGTCATTGCCTGTGTTTGGGCTTGCTTCATACAAGTTCAGAGGTTCATTATGGACACCCATTGGGGGTTCGGAGCACCAGCTCGTGAACTCTCTGTTCCAAGCCGCTGACAAATGGCTGCATTCTTGTCATGTCAGCCACCCTGATTTCCTCTTCTTCTGCCGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

369

Amino Acids

41.64

Weight (kDa)

5.57

Isoelectric Point (pI)

60.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 64 - 241 8.2e-48 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
AatII GACGTC 1 cut(s) 123
Acc65I GGTACC 1 cut(s) 795
AccB1I GGYRCC 2 cut(s) 356, 795
AccBSI CCGCTC 1 cut(s) 553
AccI GTMKAC 1 cut(s) 570
AciI CCGC 4 cut(s) 63, 152, 553, 1044
AclI AACGTT 1 cut(s) 129
AclWI GGATC 3 cut(s) 41, 399, 597
AcuI CTGAAG 1 cut(s) 851
AcyI GRCGYC 2 cut(s) 120, 481
AfaI GTAC 2 cut(s) 231, 797
AfiI CCNNNNNNNGG 2 cut(s) 956, 1004
AgeI ACCGGT 1 cut(s) 359
AgsI TTSAA 4 cut(s) 379, 434, 519, 668
AjnI CCWGG 2 cut(s) 484, 837
AleI CACNNNNGTG 1 cut(s) 362
AluBI AGCT 8 cut(s) 100, 110, 143, 725, 739, 756, 777, 1021
AluI AGCT 8 cut(s) 100, 110, 143, 725, 739, 756, 777, 1021
Alw21I GWGCWC 2 cut(s) 112, 1017
Alw26I GTCTC 2 cut(s) 127, 666
AlwI GGATC 3 cut(s) 41, 399, 597
Ama87I CYCGRG 2 cut(s) 167, 734
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 534, 722, 1057
AsiGI ACCGGT 1 cut(s) 359
Asp718I GGTACC 1 cut(s) 795
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 4 cut(s) 78, 715, 821, 835
AsuHPI GGTGA 3 cut(s) 329, 500, 899
AvaI CYCGRG 2 cut(s) 167, 734
AvaII GGWCC 3 cut(s) 715, 821, 835
BanI GGYRCC 2 cut(s) 356, 795
BanII GRGCYC 1 cut(s) 112
BauI CACGAG 1 cut(s) 1022
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 2 cut(s) 112, 1017
BbvI GCAGC 3 cut(s) 546, 734, 1044
BccI CCATC 3 cut(s) 142, 232, 614
BceAI ACGGC 4 cut(s) 55, 157, 370, 1086
BciT130I CCWGG 2 cut(s) 486, 839
BcoDI GTCTC 2 cut(s) 127, 666
BfaI CTAG 2 cut(s) 197, 564
BisI GCNGC 4 cut(s) 535, 723, 1044, 1058
BlsI GCNGC 4 cut(s) 536, 724, 1045, 1059
Bme1390I CCNGG 2 cut(s) 486, 839
Bme18I GGWCC 3 cut(s) 715, 821, 835
BmeT110I CYCGRG 2 cut(s) 167, 734
BmgT120I GGNCC 4 cut(s) 78, 715, 821, 835
BmiI GGNNCC 2 cut(s) 358, 797
BmrFI CCNGG 2 cut(s) 486, 839
BmsI GCATC 2 cut(s) 99, 832
BpiI GAAGAC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 624
Bsa29I ATCGAT 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 594
BsaHI GRCGYC 2 cut(s) 120, 481
BsaI GGTCTC 1 cut(s) 666
BsaJI CCNNGG 2 cut(s) 456, 923
BsaWI WCCGGW 1 cut(s) 359
Bsc4I CCNNNNNNNGG 2 cut(s) 956, 1004
Bse118I RCCGGY 2 cut(s) 232, 359
Bse1I ACTGG 2 cut(s) 189, 612
Bse3DI GCAATG 2 cut(s) 254, 944
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 2 cut(s) 486, 839
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 456, 923
BseGI GGATG 3 cut(s) 224, 684, 847
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 2 cut(s) 956, 1004
BseMI GCAATG 2 cut(s) 254, 944
BseMII CTCAG 4 cut(s) 125, 251, 740, 740
BseNI ACTGG 2 cut(s) 189, 612
BseXI GCAGC 3 cut(s) 546, 734, 1044
BshFI GGCC 1 cut(s) 80
BshNI GGYRCC 2 cut(s) 356, 795
BshTI ACCGGT 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 93
BsiHKAI GWGCWC 2 cut(s) 112, 1017
BsiHKCI CYCGRG 2 cut(s) 167, 734
BsiSI CCGG 2 cut(s) 233, 360
BslFI GGGAC 2 cut(s) 341, 398
BslI CCNNNNNNNGG 2 cut(s) 956, 1004
BsmAI GTCTC 2 cut(s) 127, 666
BsmBI CGTCTC 1 cut(s) 127
BsmFI GGGAC 2 cut(s) 341, 398
BsmI GAATGC 1 cut(s) 1060
BsnI GGCC 1 cut(s) 80
Bso31I GGTCTC 1 cut(s) 666
BsoBI CYCGRG 2 cut(s) 167, 734
Bsp1286I GDGCHC 2 cut(s) 112, 1017
Bsp143I GATC 5 cut(s) 46, 94, 199, 391, 589
BspACI CCGC 4 cut(s) 63, 152, 553, 1044
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 4 cut(s) 124, 250, 739, 741
BspDI ATCGAT 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 358, 797
BspPI GGATC 3 cut(s) 41, 399, 597
BspQI GCTCTTC 1 cut(s) 265
BspT107I GGYRCC 2 cut(s) 356, 795
BspTNI GGTCTC 1 cut(s) 666
BsrBI CCGCTC 1 cut(s) 553
BsrDI GCAATG 2 cut(s) 254, 944
BsrFI RCCGGY 2 cut(s) 232, 359
BsrI ACTGG 2 cut(s) 189, 612
BssAI RCCGGY 2 cut(s) 232, 359
BssECI CCNNGG 2 cut(s) 456, 923
BssMI GATC 5 cut(s) 46, 94, 199, 391, 589
BssNI GRCGYC 2 cut(s) 120, 481
BssSI CACGAG 1 cut(s) 1022
BssT1I CCWWGG 2 cut(s) 456, 923
Bst2BI CACGAG 1 cut(s) 1022
Bst2UI CCWGG 2 cut(s) 486, 839
Bst4CI ACNGT 2 cut(s) 503, 575
Bst6I CTCTTC 3 cut(s) 265, 613, 1097
BstACI GRCGYC 2 cut(s) 120, 481
BstC8I GCNNGC 1 cut(s) 963
BstDEI CTNAG 4 cut(s) 111, 237, 726, 749
BstF5I GGATG 3 cut(s) 224, 684, 847
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 5 cut(s) 49, 97, 202, 394, 592
BstMAI GTCTC 2 cut(s) 127, 666
BstMBI GATC 5 cut(s) 46, 94, 199, 391, 589
BstMWI GCNNNNNNNGC 3 cut(s) 39, 531, 745
BstNI CCWGG 2 cut(s) 486, 839
BstSCI CCNGG 2 cut(s) 484, 837
BstV1I GCAGC 3 cut(s) 546, 734, 1044
BstV2I GAAGAC 1 cut(s) 609
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 1 cut(s) 80
BsuTUI ATCGAT 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 3 cut(s) 224, 684, 847
BtsI GCAGTG 1 cut(s) 901
BtsIMutI CAGTG 4 cut(s) 508, 619, 827, 901
Cac8I GCNNGC 1 cut(s) 963
CfoI GCGC 1 cut(s) 90
Cfr10I RCCGGY 2 cut(s) 232, 359
Cfr13I GGNCC 4 cut(s) 78, 715, 821, 835
ClaI ATCGAT 1 cut(s) 93
CseI GACGC 2 cut(s) 470, 754
Csp6I GTAC 2 cut(s) 230, 796
CspAI ACCGGT 1 cut(s) 359
CviAII CATG 3 cut(s) 452, 792, 1070
CviQI GTAC 2 cut(s) 230, 796
DdeI CTNAG 4 cut(s) 111, 237, 726, 749
DpnI GATC 5 cut(s) 48, 96, 201, 393, 591
DpnII GATC 5 cut(s) 46, 94, 199, 391, 589
Eam1104I CTCTTC 3 cut(s) 265, 613, 1097
EarI CTCTTC 3 cut(s) 265, 613, 1097
Ecl136II GAGCTC 1 cut(s) 110
Eco130I CCWWGG 2 cut(s) 456, 923
Eco24I GRGCYC 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 666
Eco47I GGWCC 3 cut(s) 715, 821, 835
Eco53kI GAGCTC 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 851
Eco88I CYCGRG 2 cut(s) 167, 734
EcoICRI GAGCTC 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 835
EcoRII CCWGG 2 cut(s) 484, 837
EcoT14I CCWWGG 2 cut(s) 456, 923
EcoT38I GRGCYC 1 cut(s) 112
ErhI CCWWGG 2 cut(s) 456, 923
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 3 cut(s) 455, 795, 1073
FaqI GGGAC 2 cut(s) 341, 398
FatI CATG 3 cut(s) 451, 791, 1069
FauI CCCGC 1 cut(s) 546
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 4 cut(s) 535, 723, 1044, 1058
FokI GGATG 3 cut(s) 211, 671, 854
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 4 cut(s) 535, 723, 1044, 1058
FspBI CTAG 2 cut(s) 197, 564
GlaI GCGC 1 cut(s) 89
GluI GCNGC 4 cut(s) 535, 723, 1044, 1058
HaeIII GGCC 1 cut(s) 80
HapII CCGG 2 cut(s) 233, 360
HgaI GACGC 2 cut(s) 470, 754
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 2 cut(s) 120, 481
Hin1II CATG 3 cut(s) 455, 795, 1073
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 6 cut(s) 212, 329, 461, 515, 545, 605
HpaII CCGG 2 cut(s) 233, 360
HphI GGTGA 3 cut(s) 329, 500, 899
Hpy166II GTNNAC 5 cut(s) 24, 571, 692, 899, 1027
Hpy188I TCNGA 5 cut(s) 114, 178, 550, 980, 1012
Hpy188III TCNNGA 7 cut(s) 197, 512, 599, 665, 734, 853, 1024
Hpy8I GTNNAC 5 cut(s) 24, 571, 692, 899, 1027
Hpy99I CGWCG 3 cut(s) 47, 122, 1107
HpyAV CCTTC 5 cut(s) 156, 426, 686, 826, 884
HpyCH4III ACNGT 2 cut(s) 503, 575
HpyCH4IV ACGT 3 cut(s) 120, 129, 857
HpyCH4V TGCA 3 cut(s) 338, 791, 1060
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 531, 745
HpyF3I CTNAG 4 cut(s) 111, 237, 726, 749
HpySE526I ACGT 3 cut(s) 120, 129, 857
Hsp92I GRCGYC 2 cut(s) 120, 481
Hsp92II CATG 3 cut(s) 455, 795, 1073
HspAI GCGC 1 cut(s) 88
KpnI GGTACC 1 cut(s) 799
Kzo9I GATC 5 cut(s) 46, 94, 199, 391, 589
LguI GCTCTTC 1 cut(s) 265
LmnI GCTCC 3 cut(s) 105, 148, 1012
Lsp1109I GCAGC 3 cut(s) 546, 734, 1044
LweI GCATC 2 cut(s) 99, 832
MaeI CTAG 2 cut(s) 197, 564
MaeII ACGT 3 cut(s) 120, 129, 857
MaeIII GTNAC 2 cut(s) 217, 758
MalI GATC 5 cut(s) 48, 96, 201, 393, 591
MbiI CCGCTC 1 cut(s) 553
MboI GATC 5 cut(s) 46, 94, 199, 391, 589
MboII GAAGA 7 cut(s) 177, 282, 600, 614, 949, 1084, 1087
MhlI GDGCHC 2 cut(s) 112, 1017
MluCI AATT 1 cut(s) 801
MlyI GAGTC 3 cut(s) 221, 323, 599
MnlI CCTC 7 cut(s) 23, 378, 579, 728, 878, 974, 1100
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 2 cut(s) 362, 450
MspA1I CMGCKG 1 cut(s) 1046
MspI CCGG 2 cut(s) 233, 360
MspR9I CCNGG 2 cut(s) 486, 839
Mva1269I GAATGC 1 cut(s) 1060
MvaI CCWGG 2 cut(s) 486, 839
MwoI GCNNNNNNNGC 3 cut(s) 39, 531, 745
NdeII GATC 5 cut(s) 46, 94, 199, 391, 589
NlaIII CATG 3 cut(s) 455, 795, 1073
NlaIV GGNNCC 2 cut(s) 358, 797
NmuCI GTSAC 2 cut(s) 217, 758
OliI CACNNNNGTG 1 cut(s) 362
PaeR7I CTCGAG 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 265
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 174
PctI GAATGC 1 cut(s) 1060
PfeI GAWTC 3 cut(s) 461, 515, 545
PinAI ACCGGT 1 cut(s) 359
PkrI GCNGC 4 cut(s) 536, 724, 1045, 1059
PleI GAGTC 3 cut(s) 220, 323, 599
PpsI GAGTC 3 cut(s) 220, 323, 599
PpuMI RGGWCCY 1 cut(s) 835
PsiI TTATAA 1 cut(s) 288
Psp124BI GAGCTC 1 cut(s) 112
Psp1406I AACGTT 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 835
Psp6I CCWGG 2 cut(s) 484, 837
PspGI CCWGG 2 cut(s) 484, 837
PspN4I GGNNCC 2 cut(s) 358, 797
PspPI GGNCC 4 cut(s) 78, 715, 821, 835
PspPPI RGGWCCY 1 cut(s) 835
PspXI VCTCGAGB 1 cut(s) 167
RsaI GTAC 2 cut(s) 231, 797
RsaNI GTAC 2 cut(s) 230, 796
RseI CAYNNNNRTG 2 cut(s) 362, 450
SacI GAGCTC 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 4 cut(s) 535, 723, 1044, 1058
Sau3AI GATC 5 cut(s) 46, 94, 199, 391, 589
Sau96I GGNCC 4 cut(s) 78, 715, 821, 835
SchI GAGTC 3 cut(s) 221, 323, 599
ScrFI CCNGG 2 cut(s) 486, 839
SduI GDGCHC 2 cut(s) 112, 1017
SfaNI GCATC 2 cut(s) 99, 832
Sfr274I CTCGAG 1 cut(s) 167
SgrAI CRCCGGYG 1 cut(s) 359
SinI GGWCC 3 cut(s) 715, 821, 835
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 2 cut(s) 362, 450
SmlI CTYRAG 2 cut(s) 167, 639
SmoI CTYRAG 2 cut(s) 167, 639
Sse9I AATT 1 cut(s) 801
SsiI CCGC 4 cut(s) 63, 152, 553, 1044
SspMI CTAG 2 cut(s) 197, 564
SstI GAGCTC 1 cut(s) 112
StyD4I CCNGG 2 cut(s) 484, 837
StyI CCWWGG 2 cut(s) 456, 923
TaaI ACNGT 2 cut(s) 503, 575
TaiI ACGT 3 cut(s) 123, 132, 860
TaqI TCGA 2 cut(s) 93, 168
TaqII GACCGA 3 cut(s) 205, 759, 838
TasI AATT 1 cut(s) 801
TauI GCSGC 1 cut(s) 1046
TfiI GAWTC 3 cut(s) 461, 515, 545
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 4 cut(s) 508, 619, 834, 901
TseFI GTSAC 2 cut(s) 217, 758
TseI GCWGC 3 cut(s) 534, 722, 1057
Tsp45I GTSAC 2 cut(s) 217, 758
TspDTI ATGAA 3 cut(s) 453, 957, 975
TspGWI ACGGA 3 cut(s) 92, 217, 677
TspRI CASTG 4 cut(s) 508, 619, 834, 901
VpaK11BI GGWCC 3 cut(s) 715, 821, 835
XbaI TCTAGA 1 cut(s) 196
XhoI CTCGAG 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 570
XspI CTAG 2 cut(s) 197, 564
ZraI GACGTC 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.