RchiOBHm_Chr4g0434471

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009397
Physical Location & Seq
Reverse (-)
58226407 .. 58230255
3849 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40292

Sequence Viewer

Length: 1227 bp
ATGTCGGGAACGGGATTGCCGGTGACGCGAGGCCGCGGAGAAGATCGGTTTTACAATCCGGCGAGAGCGCGTAGGGCCCACCAGAGCCAGAAAGACGCCGAGCAACTTCGCCGAGCTCAGAGCGACGTCACGCCCAGTCAATCGCCTTCGCTCAAGGGCGGCAACCCGAACCGGGAGCCGGAGAACCGGGTCGGGTCGGATGTGCAGCCTCCCAAGCGGGTCGCCGTGCCCACTGGCGAGCCGGCCGTGAAGCCGTTGAGTAATCTCGAGCGGTTCTTGCAGTCCATCACGCCCTCAGTTCCTGCTCAGTACCTCTCCAAGACGACGATGAGAGGATTGAGTACATGTGACGTGGAGTTTCAGCCATTCTTTGTTCTTGGTGATCTGTGGGAGTCTTTCAAGGAGTGGAGTGCTTACGGTGCCGGAGTGCCTCTGATTTTGAATGATAGTGACTTTGTGGTCCAGTACTATGTCCCTTATTTATCCGGTATTCAAATATACGGCAACTCTATGAAATTGTCGTCTAAGTCAAGGCGACCAGATGAGGATAGTGACAGTGAATTTCGGGATTCTAGTAGTGATGGTAGCTGTGATGTTGAACCAGTTAAAATAAAATATTTGAGGGAGCAGCGGAATCATCAAATGTCGAGTGAAATTCCTCAAAGGTTAGAAAGCATATCTCTGAGAGATCAGCATTATCCACTCCAAGAGGACTGCTCCAGTGATGAGGGTGAACCTGTAAATTCACAAGGTTGCTTATTATTTGAGTATTTTGAACGTGATCTTCCTTATTGCCGTGAGCCTTTAGCTGATAAGATATTAGATCTTGCTTTTCGTTTTCCTGAGCTGAAGACAATAAGAAGTTGTGATCTACTGGCTTCCAGTTGGATTTCTGTTGCATGGTATCCAATTTACAGGATTCCAACAGGACCAACTTTAAAGGATCTTGATGCGTGCTTTCTGTCATACCATTCACTTTTTACCCCCGTGGGAGATGTACAAGATCCCCGGGCTCCTGTAATAACCTATCCGAGTGACATGGATGGTATCCCTAAGATGTCCTTGCCTGTTTTTGGTCTTGCTTCATACAAGTTCAGAGGGTCCTTGTGGACTCCTAGTGGGGGATTGGAACGACAATTAGCGAACTCCCTCTTGCAGGCCACTGATGACTTTCTAAGGCTGCATCAGGTCAATCATCCAGATTTTCTGTTCTTCAGCCGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

408

Amino Acids

46.11

Weight (kDa)

5.55

Isoelectric Point (pI)

61.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 87 - 405 4.8e-101 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 458
AatII GACGTC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 419
AccBSI CCGCTC 1 cut(s) 271
AccII CGCG 3 cut(s) 28, 36, 70
AciI CCGC 6 cut(s) 34, 36, 159, 217, 271, 631
AclWI GGATC 2 cut(s) 951, 998
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 3 cut(s) 560, 654, 742
AcuI CTGAAG 2 cut(s) 869, 1198
AcyI GRCGYC 2 cut(s) 96, 126
AfaI GTAC 4 cut(s) 311, 343, 467, 999
AfiI CCNNNNNNNGG 5 cut(s) 172, 178, 1073, 1121, 1156
AflIII ACRYGT 1 cut(s) 344
AgsI TTSAA 5 cut(s) 400, 442, 494, 599, 776
AjiI CACGTC 1 cut(s) 352
AluBI AGCT 4 cut(s) 116, 588, 809, 847
AluI AGCT 4 cut(s) 116, 588, 809, 847
Alw21I GWGCWC 1 cut(s) 118
AlwI GGATC 2 cut(s) 951, 998
AlwNI CAGNNNCTG 1 cut(s) 302
Ama87I CYCGRG 2 cut(s) 266, 1008
AoxI GGCC 4 cut(s) 31, 75, 243, 1158
ApaI GGGCCC 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 205, 628, 1180
ApoI RAATTY 3 cut(s) 560, 654, 742
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 5 cut(s) 75, 76, 460, 929, 1101
AsuC2I CCSGG 4 cut(s) 173, 188, 1009, 1010
AsuHPI GGTGA 3 cut(s) 34, 392, 743
AvaI CYCGRG 2 cut(s) 266, 1008
AvaII GGWCC 3 cut(s) 460, 929, 1101
BaeGI GKGCMC 2 cut(s) 79, 231
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 3 cut(s) 79, 118, 1015
BbsI GAAGAC 1 cut(s) 857
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 217, 640, 1167
BccI CCATC 3 cut(s) 293, 575, 1037
BceAI ACGGC 6 cut(s) 209, 230, 238, 517, 780, 1203
BciVI GTATCC 2 cut(s) 915, 1058
BcnI CCSGG 4 cut(s) 173, 188, 1009, 1010
BfaI CTAG 2 cut(s) 573, 1116
BfuI GTATCC 2 cut(s) 915, 1058
BglII AGATCT 1 cut(s) 823
BisI GCNGC 5 cut(s) 34, 160, 206, 629, 1181
BlsI GCNGC 5 cut(s) 35, 161, 207, 630, 1182
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 4 cut(s) 173, 188, 1009, 1010
Bme18I GGWCC 3 cut(s) 460, 929, 1101
BmeT110I CYCGRG 2 cut(s) 266, 1008
BmgBI CACGTC 1 cut(s) 352
BmgT120I GGNCC 5 cut(s) 75, 76, 460, 929, 1101
BmiI GGNNCC 5 cut(s) 77, 177, 421, 1014, 1102
BmrFI CCNGG 4 cut(s) 173, 188, 1009, 1010
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 940, 1192
BmuI ACTGGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 857
BplI GAGNNNNNCTC 2 cut(s) 701, 733
BpmI CTGGAG 1 cut(s) 703
Bpu10I CCTNAGC 1 cut(s) 843
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 4 cut(s) 173, 188, 1009, 1010
BsaHI GRCGYC 2 cut(s) 96, 126
BsaJI CCNNGG 4 cut(s) 34, 987, 1007, 1008
BsaWI WCCGGW 1 cut(s) 485
Bsc4I CCNNNNNNNGG 5 cut(s) 172, 178, 1073, 1121, 1156
Bse118I RCCGGY 2 cut(s) 19, 241
Bse1I ACTGG 7 cut(s) 135, 238, 463, 602, 720, 879, 882
BseDI CCNNGG 4 cut(s) 34, 987, 1007, 1008
BseGI GGATG 3 cut(s) 205, 1048, 1195
BseLI CCNNNNNNNGG 5 cut(s) 172, 178, 1073, 1121, 1156
BseMII CTCAG 5 cut(s) 131, 309, 320, 674, 834
BseNI ACTGG 7 cut(s) 135, 238, 463, 602, 720, 879, 882
BseSI GKGCMC 2 cut(s) 79, 231
BseX3I CGGCCG 1 cut(s) 243
BseXI GCAGC 3 cut(s) 217, 640, 1167
BsgI GTGCAG 1 cut(s) 224
Bsh1236I CGCG 3 cut(s) 28, 36, 70
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 4 cut(s) 33, 77, 245, 1160
BshNI GGYRCC 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 2 cut(s) 266, 1008
BsiSI CCGG 9 cut(s) 20, 59, 172, 179, 187, 242, 423, 486, 1009
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 5 cut(s) 172, 178, 1073, 1121, 1156
BsmFI GGGAC 1 cut(s) 458
BsnI GGCC 4 cut(s) 33, 77, 245, 1160
BsoBI CYCGRG 2 cut(s) 266, 1008
Bsp120I GGGCCC 1 cut(s) 75
Bsp1286I GDGCHC 4 cut(s) 79, 118, 231, 1015
Bsp1407I TGTACA 1 cut(s) 997
Bsp143I GATC 8 cut(s) 43, 382, 688, 781, 823, 868, 943, 1003
BspACI CCGC 6 cut(s) 34, 36, 159, 217, 271, 631
BspANI GGCC 4 cut(s) 33, 77, 245, 1160
BspCNI CTCAG 5 cut(s) 130, 308, 319, 675, 835
BspFNI CGCG 3 cut(s) 28, 36, 70
BspLI GGNNCC 5 cut(s) 77, 177, 421, 1014, 1102
BspPI GGATC 2 cut(s) 951, 998
BspT107I GGYRCC 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 19, 241
BsrGI TGTACA 1 cut(s) 997
BsrI ACTGG 7 cut(s) 135, 238, 463, 602, 720, 879, 882
BssAI RCCGGY 2 cut(s) 19, 241
BssECI CCNNGG 4 cut(s) 34, 987, 1007, 1008
BssMI GATC 8 cut(s) 43, 382, 688, 781, 823, 868, 943, 1003
BssNI GRCGYC 2 cut(s) 96, 126
Bst4CI ACNGT 2 cut(s) 419, 557
BstACI GRCGYC 2 cut(s) 96, 126
BstAUI TGTACA 1 cut(s) 997
BstC8I GCNNGC 4 cut(s) 239, 243, 955, 1158
BstDEI CTNAG 8 cut(s) 117, 295, 306, 525, 683, 843, 1053, 1175
BstDSI CCRYGG 2 cut(s) 34, 987
BstENI CCTNNNNNAGG 1 cut(s) 1154
BstF5I GGATG 3 cut(s) 205, 1048, 1195
BstFNI CGCG 3 cut(s) 28, 36, 70
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 8 cut(s) 46, 385, 691, 784, 826, 871, 946, 1006
BstMBI GATC 8 cut(s) 43, 382, 688, 781, 823, 868, 943, 1003
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 5 cut(s) 25, 74, 214, 277, 419
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 4 cut(s) 171, 186, 1007, 1008
BstSLI GKGCMC 2 cut(s) 79, 231
BstUI CGCG 3 cut(s) 28, 36, 70
BstV1I GCAGC 3 cut(s) 217, 640, 1167
BstV2I GAAGAC 1 cut(s) 857
BstX2I RGATCY 3 cut(s) 823, 943, 1003
BstYI RGATCY 3 cut(s) 823, 943, 1003
BstZI CGGCCG 1 cut(s) 243
BsuI GTATCC 2 cut(s) 915, 1058
BsuRI GGCC 4 cut(s) 33, 77, 245, 1160
BtgI CCRYGG 2 cut(s) 34, 987
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 3 cut(s) 205, 1048, 1195
BtsIMutI CAGTG 4 cut(s) 231, 562, 727, 1161
Cac8I GCNNGC 4 cut(s) 239, 243, 955, 1158
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 1 cut(s) 70
Cfr10I RCCGGY 2 cut(s) 19, 241
Cfr13I GGNCC 5 cut(s) 75, 76, 460, 929, 1101
Cfr42I CCGCGG 1 cut(s) 37
Cfr9I CCCGGG 1 cut(s) 1008
CseI GACGC 2 cut(s) 34, 104
Csp6I GTAC 4 cut(s) 310, 342, 466, 998
CviAII CATG 3 cut(s) 345, 900, 1039
CviQI GTAC 4 cut(s) 310, 342, 466, 998
DdeI CTNAG 8 cut(s) 117, 295, 306, 525, 683, 843, 1053, 1175
DpnI GATC 8 cut(s) 45, 384, 690, 783, 825, 870, 945, 1005
DpnII GATC 8 cut(s) 43, 382, 688, 781, 823, 868, 943, 1003
DraI TTTAAA 1 cut(s) 939
DrdI GACNNNNNNGTC 1 cut(s) 458
DseDI GACNNNNNNGTC 1 cut(s) 458
EaeI YGGCCR 1 cut(s) 243
EagI CGGCCG 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 116
EclXI CGGCCG 1 cut(s) 243
Eco24I GRGCYC 3 cut(s) 79, 118, 1015
Eco47I GGWCC 3 cut(s) 460, 929, 1101
Eco52I CGGCCG 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 869, 1198
Eco88I CYCGRG 2 cut(s) 266, 1008
EcoICRI GAGCTC 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 1154
EcoO109I RGGNCCY 2 cut(s) 75, 1101
EcoT38I GRGCYC 3 cut(s) 79, 118, 1015
FaeI CATG 3 cut(s) 348, 903, 1042
FaiI YATR 9 cut(s) 346, 471, 499, 512, 677, 901, 967, 1040, 1087
FalI AAGNNNNNCTT 2 cut(s) 1046, 1078
FaqI GGGAC 1 cut(s) 458
FatI CATG 3 cut(s) 344, 899, 1038
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 5 cut(s) 34, 160, 206, 629, 1181
FokI GGATG 3 cut(s) 212, 1055, 1182
FriOI GRGCYC 3 cut(s) 79, 118, 1015
Fsp4HI GCNGC 5 cut(s) 34, 160, 206, 629, 1181
FspBI CTAG 2 cut(s) 573, 1116
GlaI GCGC 1 cut(s) 69
GluI GCNGC 5 cut(s) 34, 160, 206, 629, 1181
GsuI CTGGAG 1 cut(s) 703
HaeIII GGCC 4 cut(s) 33, 77, 245, 1160
HapII CCGG 9 cut(s) 20, 59, 172, 179, 187, 242, 423, 486, 1009
HgaI GACGC 2 cut(s) 34, 104
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 2 cut(s) 96, 126
Hin1II CATG 3 cut(s) 348, 903, 1042
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 5 cut(s) 392, 569, 634, 919, 1111
HpaII CCGG 9 cut(s) 20, 59, 172, 179, 187, 242, 423, 486, 1009
HphI GGTGA 3 cut(s) 34, 392, 743
Hpy166II GTNNAC 2 cut(s) 734, 1110
Hpy188I TCNGA 6 cut(s) 120, 199, 435, 684, 1032, 1097
Hpy188III TCNNGA 6 cut(s) 6, 266, 566, 842, 947, 1199
Hpy8I GTNNAC 2 cut(s) 734, 1110
Hpy99I CGWCG 3 cut(s) 128, 328, 1224
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 2 cut(s) 419, 557
HpyCH4IV ACGT 3 cut(s) 126, 351, 778
HpyCH4V TGCA 5 cut(s) 205, 280, 899, 1156, 1183
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 74, 214, 277, 419
HpyF3I CTNAG 8 cut(s) 117, 295, 306, 525, 683, 843, 1053, 1175
HpySE526I ACGT 3 cut(s) 126, 351, 778
Hsp92I GRCGYC 2 cut(s) 96, 126
Hsp92II CATG 3 cut(s) 348, 903, 1042
HspAI GCGC 1 cut(s) 68
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 8 cut(s) 43, 382, 688, 781, 823, 868, 943, 1003
LmnI GCTCC 4 cut(s) 175, 625, 722, 1018
Lsp1109I GCAGC 3 cut(s) 217, 640, 1167
LweI GCATC 2 cut(s) 940, 1192
MaeI CTAG 2 cut(s) 573, 1116
MaeII ACGT 3 cut(s) 126, 351, 778
MaeIII GTNAC 6 cut(s) 22, 127, 347, 449, 551, 1034
MalI GATC 8 cut(s) 45, 384, 690, 783, 825, 870, 945, 1005
MbiI CCGCTC 1 cut(s) 271
MboI GATC 8 cut(s) 43, 382, 688, 781, 823, 868, 943, 1003
MboII GAAGA 4 cut(s) 53, 776, 862, 1204
MflI RGATCY 3 cut(s) 823, 943, 1003
MhlI GDGCHC 4 cut(s) 79, 118, 231, 1015
MluCI AATT 6 cut(s) 515, 560, 654, 742, 909, 1136
MlyI GAGTC 2 cut(s) 401, 1105
MmeI TCCRAC 3 cut(s) 177, 866, 947
MroNI GCCGGC 1 cut(s) 241
MseI TTAA 2 cut(s) 606, 938
MspA1I CMGCKG 2 cut(s) 36, 631
MspI CCGG 9 cut(s) 20, 59, 172, 179, 187, 242, 423, 486, 1009
MspR9I CCNGG 4 cut(s) 173, 188, 1009, 1010
MvnI CGCG 3 cut(s) 28, 36, 70
MwoI GCNNNNNNNGC 5 cut(s) 25, 74, 214, 277, 419
NaeI GCCGGC 1 cut(s) 243
NciI CCSGG 4 cut(s) 173, 188, 1009, 1010
NdeII GATC 8 cut(s) 43, 382, 688, 781, 823, 868, 943, 1003
NgoMIV GCCGGC 1 cut(s) 241
NlaIII CATG 3 cut(s) 348, 903, 1042
NlaIV GGNNCC 5 cut(s) 77, 177, 421, 1014, 1102
NmeAIII GCCGAG 2 cut(s) 124, 137
NmuCI GTSAC 6 cut(s) 22, 127, 347, 449, 551, 1034
NspI RCATGY 1 cut(s) 348
PaeR7I CTCGAG 1 cut(s) 266
PciI ACATGT 1 cut(s) 344
PdiI GCCGGC 1 cut(s) 243
PfeI GAWTC 3 cut(s) 569, 634, 919
PkrI GCNGC 5 cut(s) 35, 161, 207, 630, 1182
PleI GAGTC 2 cut(s) 400, 1105
PpsI GAGTC 2 cut(s) 400, 1105
PpuMI RGGWCCY 1 cut(s) 1101
PscI ACATGT 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 1101
PspN4I GGNNCC 5 cut(s) 77, 177, 421, 1014, 1102
PspOMI GGGCCC 1 cut(s) 75
PspPI GGNCC 5 cut(s) 75, 76, 460, 929, 1101
PspPPI RGGWCCY 1 cut(s) 1101
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 3 cut(s) 823, 943, 1003
RsaI GTAC 4 cut(s) 311, 343, 467, 999
RsaNI GTAC 4 cut(s) 310, 342, 466, 998
SacI GAGCTC 1 cut(s) 118
SacII CCGCGG 1 cut(s) 37
SaqAI TTAA 2 cut(s) 606, 938
SatI GCNGC 5 cut(s) 34, 160, 206, 629, 1181
Sau3AI GATC 8 cut(s) 43, 382, 688, 781, 823, 868, 943, 1003
Sau96I GGNCC 5 cut(s) 75, 76, 460, 929, 1101
ScaI AGTACT 1 cut(s) 467
SchI GAGTC 2 cut(s) 401, 1105
ScrFI CCNGG 4 cut(s) 173, 188, 1009, 1010
SduI GDGCHC 4 cut(s) 79, 118, 231, 1015
SfaNI GCATC 2 cut(s) 940, 1192
Sfr274I CTCGAG 1 cut(s) 266
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 3 cut(s) 460, 929, 1101
SlaI CTCGAG 1 cut(s) 266
SmaI CCCGGG 1 cut(s) 1010
SmlI CTYRAG 2 cut(s) 152, 266
SmoI CTYRAG 2 cut(s) 152, 266
Sse9I AATT 6 cut(s) 515, 560, 654, 742, 909, 1136
SsiI CCGC 6 cut(s) 34, 36, 159, 217, 271, 631
SspI AATATT 1 cut(s) 617
SspMI CTAG 2 cut(s) 573, 1116
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 4 cut(s) 171, 186, 1007, 1008
TaaI ACNGT 2 cut(s) 419, 557
TaiI ACGT 3 cut(s) 129, 354, 781
TaqI TCGA 3 cut(s) 267, 647, 1222
TasI AATT 6 cut(s) 515, 560, 654, 742, 909, 1136
TatI WGTACW 3 cut(s) 341, 465, 997
TauI GCSGC 2 cut(s) 36, 162
TfiI GAWTC 3 cut(s) 569, 634, 919
Tru1I TTAA 2 cut(s) 606, 938
Tru9I TTAA 2 cut(s) 606, 938
TscAI CASTG 4 cut(s) 238, 562, 727, 1168
TseFI GTSAC 6 cut(s) 22, 127, 347, 449, 551, 1034
TseI GCWGC 3 cut(s) 205, 628, 1180
Tsp45I GTSAC 6 cut(s) 22, 127, 347, 449, 551, 1034
TspDTI ATGAA 2 cut(s) 527, 1074
TspMI CCCGGG 1 cut(s) 1008
TspRI CASTG 4 cut(s) 238, 562, 727, 1168
VpaK11BI GGWCC 3 cut(s) 460, 929, 1101
XagI CCTNNNNNAGG 1 cut(s) 1154
XapI RAATTY 3 cut(s) 560, 654, 742
XceI RCATGY 1 cut(s) 348
XhoI CTCGAG 1 cut(s) 266
XmaI CCCGGG 1 cut(s) 1008
XspI CTAG 2 cut(s) 573, 1116
ZraI GACGTC 1 cut(s) 127
ZrmI AGTACT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.